HEADER TRANSCRIPTION 22-APR-12 4ES5 TITLE CRYSTAL STRUCTURE OF THE CAP-BINDING DOMAIN OF POLYMERASE BASIC TITLE 2 PROTEIN 2 FROM INFLUENZA VIRUS A/BAR-HEADED GS/QINGHAI/15C/2005 TITLE 3 (H5N1) WITH BOUND M7GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE BASIC SUBUNIT 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: CAP-BINDING DOMAIN, UNP RESIDUES 317-482; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 336232; SOURCE 4 STRAIN: 05(H5N1); SOURCE 5 GENE: PB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CAP-BINDING PROTEIN, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR G.MENG,Y.LIU,X.ZHENG REVDAT 3 08-NOV-23 4ES5 1 REMARK SEQADV REVDAT 2 17-JUL-13 4ES5 1 JRNL REVDAT 1 06-MAR-13 4ES5 0 JRNL AUTH Y.LIU,K.QIN,G.MENG,J.ZHANG,J.ZHOU,G.ZHAO,M.LUO,X.ZHENG JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF K339T JRNL TITL 2 SUBSTITUTION IDENTIFIED IN THE PB2 SUBUNIT CAP-BINDING JRNL TITL 3 POCKET OF INFLUENZA A VIRUS JRNL REF J.BIOL.CHEM. V. 288 11013 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23436652 JRNL DOI 10.1074/JBC.M112.392878 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 59069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3153 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4312 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 210 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5148 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 152 REMARK 3 SOLVENT ATOMS : 578 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.356 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.609 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5388 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7274 ; 2.184 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 651 ; 6.941 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;34.686 ;23.223 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1001 ;18.561 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;18.010 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 820 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3918 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3235 ; 1.831 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5233 ; 2.748 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2153 ; 3.874 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2041 ; 5.501 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5388 ; 2.487 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 578 ;10.489 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5311 ; 6.066 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ES5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000072001. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63747 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 14.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2VQZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M AMMONIUM SULFATE, 0.01M MAGNESIUM REMARK 280 CHLORIDE, 0.05M MES PH5.6, 22% PEG 8000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 19.55000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 314 REMARK 465 SER A 315 REMARK 465 HIS A 316 REMARK 465 MET A 317 REMARK 465 MET A 483 REMARK 465 GLY B 314 REMARK 465 SER B 315 REMARK 465 HIS B 316 REMARK 465 MET B 317 REMARK 465 ARG B 318 REMARK 465 GLY C 314 REMARK 465 SER C 315 REMARK 465 HIS C 316 REMARK 465 MET C 317 REMARK 465 ARG C 318 REMARK 465 ILE C 319 REMARK 465 SER C 320 REMARK 465 GLY D 314 REMARK 465 SER D 315 REMARK 465 HIS D 316 REMARK 465 MET D 317 REMARK 465 ARG D 318 REMARK 465 ILE D 319 REMARK 465 SER D 320 REMARK 465 SER D 321 REMARK 465 LYS D 482 REMARK 465 MET D 483 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 447 O HOH A 772 2.14 REMARK 500 O HOH B 684 O HOH B 735 2.15 REMARK 500 O HOH A 724 O HOH A 802 2.17 REMARK 500 OE2 GLU B 342 O HOH B 666 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 817 O HOH B 750 1455 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 352 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 PHE A 404 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP A 466 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 MET A 473 CB - CG - SD ANGL. DEV. = -21.7 DEGREES REMARK 500 ARG A 476 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 VAL B 421 CG1 - CB - CG2 ANGL. DEV. = 10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 418 76.59 -104.46 REMARK 500 ASP B 441 115.15 -169.16 REMARK 500 LYS B 482 -78.33 -130.20 REMARK 500 PHE C 420 122.13 -24.62 REMARK 500 ASN C 422 -141.63 -75.51 REMARK 500 ASN C 425 86.40 -43.19 REMARK 500 SER D 334 119.60 105.78 REMARK 500 ALA D 377 -155.59 -136.94 REMARK 500 ASP D 417 157.85 -44.58 REMARK 500 ASN D 422 -170.83 -57.10 REMARK 500 ARG D 423 -43.96 -28.20 REMARK 500 ALA D 424 106.54 -178.56 REMARK 500 ASN D 425 -93.47 174.96 REMARK 500 GLU D 452 119.14 -171.10 REMARK 500 PRO D 453 154.66 -36.04 REMARK 500 VAL D 457 55.72 6.70 REMARK 500 MET D 458 94.32 57.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 318 ILE A 319 -149.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MGT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MGT B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MGT C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MGT D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 502 DBREF 4ES5 A 318 483 UNP Q4FAV8 Q4FAV8_9INFA 317 482 DBREF 4ES5 B 318 483 UNP Q4FAV8 Q4FAV8_9INFA 317 482 DBREF 4ES5 C 318 483 UNP Q4FAV8 Q4FAV8_9INFA 317 482 DBREF 4ES5 D 318 483 UNP Q4FAV8 Q4FAV8_9INFA 317 482 SEQADV 4ES5 GLY A 314 UNP Q4FAV8 EXPRESSION TAG SEQADV 4ES5 SER A 315 UNP Q4FAV8 EXPRESSION TAG SEQADV 4ES5 HIS A 316 UNP Q4FAV8 EXPRESSION TAG SEQADV 4ES5 MET A 317 UNP Q4FAV8 EXPRESSION TAG SEQADV 4ES5 GLY B 314 UNP Q4FAV8 EXPRESSION TAG SEQADV 4ES5 SER B 315 UNP Q4FAV8 EXPRESSION TAG SEQADV 4ES5 HIS B 316 UNP Q4FAV8 EXPRESSION TAG SEQADV 4ES5 MET B 317 UNP Q4FAV8 EXPRESSION TAG SEQADV 4ES5 GLY C 314 UNP Q4FAV8 EXPRESSION TAG SEQADV 4ES5 SER C 315 UNP Q4FAV8 EXPRESSION TAG SEQADV 4ES5 HIS C 316 UNP Q4FAV8 EXPRESSION TAG SEQADV 4ES5 MET C 317 UNP Q4FAV8 EXPRESSION TAG SEQADV 4ES5 GLY D 314 UNP Q4FAV8 EXPRESSION TAG SEQADV 4ES5 SER D 315 UNP Q4FAV8 EXPRESSION TAG SEQADV 4ES5 HIS D 316 UNP Q4FAV8 EXPRESSION TAG SEQADV 4ES5 MET D 317 UNP Q4FAV8 EXPRESSION TAG SEQRES 1 A 170 GLY SER HIS MET ARG ILE SER SER SER PHE SER PHE GLY SEQRES 2 A 170 GLY PHE THR PHE LYS ARG THR SER GLY SER SER VAL THR SEQRES 3 A 170 LYS GLU GLU GLU VAL LEU THR GLY ASN LEU GLN THR LEU SEQRES 4 A 170 LYS ILE ARG VAL HIS GLU GLY TYR GLU GLU PHE THR MET SEQRES 5 A 170 VAL GLY GLN ARG ALA THR ALA ILE LEU ARG LYS ALA THR SEQRES 6 A 170 ARG ARG LEU ILE GLN LEU ILE VAL SER GLY ARG ASN GLU SEQRES 7 A 170 GLN SER ILE ALA GLU ALA ILE ILE VAL ALA MET VAL PHE SEQRES 8 A 170 SER GLN GLU ASP CYS MET ILE LYS ALA VAL ARG GLY ASP SEQRES 9 A 170 LEU ASN PHE VAL ASN ARG ALA ASN GLN ARG LEU ASN PRO SEQRES 10 A 170 MET HIS GLN LEU LEU ARG HIS PHE GLN LYS ASP ALA LYS SEQRES 11 A 170 VAL LEU PHE GLN ASN TRP GLY THR GLU PRO ILE ASP ASN SEQRES 12 A 170 VAL MET GLY MET ILE GLY ILE LEU PRO ASP MET THR PRO SEQRES 13 A 170 SER THR GLU MET SER LEU ARG GLY VAL ARG VAL SER LYS SEQRES 14 A 170 MET SEQRES 1 B 170 GLY SER HIS MET ARG ILE SER SER SER PHE SER PHE GLY SEQRES 2 B 170 GLY PHE THR PHE LYS ARG THR SER GLY SER SER VAL THR SEQRES 3 B 170 LYS GLU GLU GLU VAL LEU THR GLY ASN LEU GLN THR LEU SEQRES 4 B 170 LYS ILE ARG VAL HIS GLU GLY TYR GLU GLU PHE THR MET SEQRES 5 B 170 VAL GLY GLN ARG ALA THR ALA ILE LEU ARG LYS ALA THR SEQRES 6 B 170 ARG ARG LEU ILE GLN LEU ILE VAL SER GLY ARG ASN GLU SEQRES 7 B 170 GLN SER ILE ALA GLU ALA ILE ILE VAL ALA MET VAL PHE SEQRES 8 B 170 SER GLN GLU ASP CYS MET ILE LYS ALA VAL ARG GLY ASP SEQRES 9 B 170 LEU ASN PHE VAL ASN ARG ALA ASN GLN ARG LEU ASN PRO SEQRES 10 B 170 MET HIS GLN LEU LEU ARG HIS PHE GLN LYS ASP ALA LYS SEQRES 11 B 170 VAL LEU PHE GLN ASN TRP GLY THR GLU PRO ILE ASP ASN SEQRES 12 B 170 VAL MET GLY MET ILE GLY ILE LEU PRO ASP MET THR PRO SEQRES 13 B 170 SER THR GLU MET SER LEU ARG GLY VAL ARG VAL SER LYS SEQRES 14 B 170 MET SEQRES 1 C 170 GLY SER HIS MET ARG ILE SER SER SER PHE SER PHE GLY SEQRES 2 C 170 GLY PHE THR PHE LYS ARG THR SER GLY SER SER VAL THR SEQRES 3 C 170 LYS GLU GLU GLU VAL LEU THR GLY ASN LEU GLN THR LEU SEQRES 4 C 170 LYS ILE ARG VAL HIS GLU GLY TYR GLU GLU PHE THR MET SEQRES 5 C 170 VAL GLY GLN ARG ALA THR ALA ILE LEU ARG LYS ALA THR SEQRES 6 C 170 ARG ARG LEU ILE GLN LEU ILE VAL SER GLY ARG ASN GLU SEQRES 7 C 170 GLN SER ILE ALA GLU ALA ILE ILE VAL ALA MET VAL PHE SEQRES 8 C 170 SER GLN GLU ASP CYS MET ILE LYS ALA VAL ARG GLY ASP SEQRES 9 C 170 LEU ASN PHE VAL ASN ARG ALA ASN GLN ARG LEU ASN PRO SEQRES 10 C 170 MET HIS GLN LEU LEU ARG HIS PHE GLN LYS ASP ALA LYS SEQRES 11 C 170 VAL LEU PHE GLN ASN TRP GLY THR GLU PRO ILE ASP ASN SEQRES 12 C 170 VAL MET GLY MET ILE GLY ILE LEU PRO ASP MET THR PRO SEQRES 13 C 170 SER THR GLU MET SER LEU ARG GLY VAL ARG VAL SER LYS SEQRES 14 C 170 MET SEQRES 1 D 170 GLY SER HIS MET ARG ILE SER SER SER PHE SER PHE GLY SEQRES 2 D 170 GLY PHE THR PHE LYS ARG THR SER GLY SER SER VAL THR SEQRES 3 D 170 LYS GLU GLU GLU VAL LEU THR GLY ASN LEU GLN THR LEU SEQRES 4 D 170 LYS ILE ARG VAL HIS GLU GLY TYR GLU GLU PHE THR MET SEQRES 5 D 170 VAL GLY GLN ARG ALA THR ALA ILE LEU ARG LYS ALA THR SEQRES 6 D 170 ARG ARG LEU ILE GLN LEU ILE VAL SER GLY ARG ASN GLU SEQRES 7 D 170 GLN SER ILE ALA GLU ALA ILE ILE VAL ALA MET VAL PHE SEQRES 8 D 170 SER GLN GLU ASP CYS MET ILE LYS ALA VAL ARG GLY ASP SEQRES 9 D 170 LEU ASN PHE VAL ASN ARG ALA ASN GLN ARG LEU ASN PRO SEQRES 10 D 170 MET HIS GLN LEU LEU ARG HIS PHE GLN LYS ASP ALA LYS SEQRES 11 D 170 VAL LEU PHE GLN ASN TRP GLY THR GLU PRO ILE ASP ASN SEQRES 12 D 170 VAL MET GLY MET ILE GLY ILE LEU PRO ASP MET THR PRO SEQRES 13 D 170 SER THR GLU MET SER LEU ARG GLY VAL ARG VAL SER LYS SEQRES 14 D 170 MET HET MGT A 501 33 HET SO4 A 502 5 HET MGT B 501 33 HET SO4 B 502 5 HET MGT C 501 33 HET SO4 C 502 5 HET MGT D 501 33 HET SO4 D 502 5 HETNAM MGT 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 5 MGT 4(C11 H20 N5 O14 P3) FORMUL 6 SO4 4(O4 S 2-) FORMUL 13 HOH *578(H2 O) HELIX 1 1 ASN A 390 SER A 405 1 16 HELIX 2 2 GLU A 407 ALA A 413 1 7 HELIX 3 3 ASN A 429 ASP A 441 1 13 HELIX 4 4 ALA A 442 GLY A 450 1 9 HELIX 5 5 ASN B 390 GLN B 406 1 17 HELIX 6 6 GLU B 407 LYS B 412 1 6 HELIX 7 7 ASN B 429 ASP B 441 1 13 HELIX 8 8 ALA B 442 GLY B 450 1 9 HELIX 9 9 ASN C 390 SER C 405 1 16 HELIX 10 10 GLU C 407 LYS C 412 1 6 HELIX 11 11 ASN C 429 ASP C 441 1 13 HELIX 12 12 ALA C 442 GLY C 450 1 9 HELIX 13 13 ASN D 390 SER D 405 1 16 HELIX 14 14 GLU D 407 LYS D 412 1 6 HELIX 15 15 ASN D 429 ASP D 441 1 13 HELIX 16 16 ALA D 442 GLY D 450 1 9 SHEET 1 A 8 PHE A 323 PHE A 325 0 SHEET 2 A 8 PHE A 328 GLY A 335 -1 O PHE A 330 N PHE A 323 SHEET 3 A 8 GLU A 361 VAL A 366 -1 O GLU A 362 N THR A 333 SHEET 4 A 8 ALA A 370 ALA A 377 -1 O LEU A 374 N PHE A 363 SHEET 5 A 8 ARG A 380 GLY A 388 -1 O SER A 387 N THR A 371 SHEET 6 A 8 VAL A 478 SER A 481 1 O SER A 481 N VAL A 386 SHEET 7 A 8 MET A 460 ILE A 463 -1 N ILE A 461 O VAL A 480 SHEET 8 A 8 PRO A 469 SER A 470 -1 O SER A 470 N GLY A 462 SHEET 1 B 2 VAL A 338 LEU A 345 0 SHEET 2 B 2 THR A 351 GLU A 358 -1 O ILE A 354 N GLU A 342 SHEET 1 C 2 THR A 451 PRO A 453 0 SHEET 2 C 2 MET A 473 LEU A 475 -1 O SER A 474 N GLU A 452 SHEET 1 D 8 SER B 322 PHE B 325 0 SHEET 2 D 8 PHE B 328 GLY B 335 -1 O PHE B 330 N PHE B 323 SHEET 3 D 8 GLU B 361 VAL B 366 -1 O GLU B 362 N SER B 334 SHEET 4 D 8 ALA B 370 ALA B 377 -1 O LEU B 374 N PHE B 363 SHEET 5 D 8 ARG B 380 GLY B 388 -1 O ARG B 380 N ALA B 377 SHEET 6 D 8 VAL B 478 SER B 481 1 O SER B 481 N VAL B 386 SHEET 7 D 8 MET B 460 ILE B 463 -1 N ILE B 461 O VAL B 480 SHEET 8 D 8 PRO B 469 SER B 470 -1 O SER B 470 N GLY B 462 SHEET 1 E 2 VAL B 338 LEU B 345 0 SHEET 2 E 2 THR B 351 GLU B 358 -1 O ILE B 354 N GLU B 342 SHEET 1 F 2 THR B 451 PRO B 453 0 SHEET 2 F 2 MET B 473 LEU B 475 -1 O SER B 474 N GLU B 452 SHEET 1 G 8 PHE C 323 PHE C 325 0 SHEET 2 G 8 PHE C 328 GLY C 335 -1 O PHE C 330 N PHE C 323 SHEET 3 G 8 GLU C 361 VAL C 366 -1 O VAL C 366 N THR C 329 SHEET 4 G 8 ALA C 370 ALA C 377 -1 O ALA C 372 N MET C 365 SHEET 5 G 8 ARG C 380 GLY C 388 -1 O GLN C 383 N ARG C 375 SHEET 6 G 8 VAL C 478 SER C 481 1 O SER C 481 N VAL C 386 SHEET 7 G 8 MET C 460 ILE C 463 -1 N ILE C 461 O VAL C 480 SHEET 8 G 8 PRO C 469 SER C 470 -1 O SER C 470 N GLY C 462 SHEET 1 H 2 VAL C 338 LEU C 345 0 SHEET 2 H 2 THR C 351 GLU C 358 -1 O LEU C 352 N VAL C 344 SHEET 1 I 2 THR C 451 PRO C 453 0 SHEET 2 I 2 MET C 473 LEU C 475 -1 O SER C 474 N GLU C 452 SHEET 1 J 6 PHE D 323 PHE D 325 0 SHEET 2 J 6 PHE D 328 ARG D 332 -1 O PHE D 330 N PHE D 323 SHEET 3 J 6 GLU D 361 VAL D 366 -1 O THR D 364 N LYS D 331 SHEET 4 J 6 ALA D 370 ALA D 377 -1 O LEU D 374 N PHE D 363 SHEET 5 J 6 ARG D 380 GLY D 388 -1 O GLN D 383 N ARG D 375 SHEET 6 J 6 VAL D 478 ARG D 479 1 O ARG D 479 N VAL D 386 SHEET 1 K 2 VAL D 338 LEU D 345 0 SHEET 2 K 2 THR D 351 GLU D 358 -1 O ILE D 354 N GLU D 342 SHEET 1 L 2 THR D 451 PRO D 453 0 SHEET 2 L 2 MET D 473 LEU D 475 -1 O SER D 474 N GLU D 452 SHEET 1 M 2 GLY D 462 ILE D 463 0 SHEET 2 M 2 PRO D 469 SER D 470 -1 O SER D 470 N GLY D 462 SITE 1 AC1 16 PHE A 323 HIS A 357 GLU A 361 PHE A 363 SITE 2 AC1 16 LYS A 376 PHE A 404 GLN A 406 ASN A 429 SITE 3 AC1 16 MET A 431 HIS A 432 HOH A 699 HOH A 702 SITE 4 AC1 16 HOH A 720 HOH A 740 HOH A 852 HOH A 861 SITE 1 AC2 9 SER A 324 PHE A 325 GLY A 326 GLY A 327 SITE 2 AC2 9 HIS A 432 HOH A 647 HOH A 751 HOH A 760 SITE 3 AC2 9 HOH A 766 SITE 1 AC3 16 PHE B 323 ARG B 332 HIS B 357 GLU B 361 SITE 2 AC3 16 PHE B 363 LYS B 376 PHE B 404 ASN B 429 SITE 3 AC3 16 MET B 431 HIS B 432 HOH B 608 HOH B 635 SITE 4 AC3 16 HOH B 698 HOH B 736 ARG D 355 MGT D 501 SITE 1 AC4 7 SER B 324 PHE B 325 GLY B 326 GLY B 327 SITE 2 AC4 7 HIS B 432 HOH B 675 HOH B 775 SITE 1 AC5 9 PHE C 323 ARG C 355 HIS C 357 GLU C 361 SITE 2 AC5 9 PHE C 363 LYS C 376 PHE C 404 ASN C 429 SITE 3 AC5 9 MET C 431 SITE 1 AC6 8 SER C 324 PHE C 325 GLY C 326 GLY C 327 SITE 2 AC6 8 HIS C 432 HOH C 658 ARG D 423 HOH D 615 SITE 1 AC7 11 MGT B 501 PHE D 323 HIS D 357 GLU D 361 SITE 2 AC7 11 PHE D 363 LYS D 376 PHE D 404 GLN D 406 SITE 3 AC7 11 ASN D 429 MET D 431 HIS D 432 SITE 1 AC8 5 PHE D 325 GLY D 326 GLY D 327 HIS D 432 SITE 2 AC8 5 HOH D 616 CRYST1 62.480 39.100 141.080 90.00 102.38 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016005 0.000000 0.003513 0.00000 SCALE2 0.000000 0.025575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007257 0.00000