HEADER HYDROLASE 23-APR-12 4ET0 TITLE CRYSTAL STRUCTURE OF CIRCULARLY PERMUTED HUMAN ASPARAGINASE-LIKE TITLE 2 PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-ASPARAGINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASPARAGINASE-LIKE PROTEIN 1, L-ASPARAGINE AMIDOHYDROLASE; COMPND 5 EC: 3.5.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASRGL1, ALP, CRASH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.Z.LI,S.D.YOGESHA,Y.ZHANG REVDAT 3 28-FEB-24 4ET0 1 REMARK SEQADV LINK REVDAT 2 12-DEC-12 4ET0 1 JRNL REVDAT 1 26-SEP-12 4ET0 0 JRNL AUTH W.LI,J.R.CANTOR,S.D.YOGESHA,S.YANG,L.CHANTRANUPONG,J.Q.LIU, JRNL AUTH 2 G.AGNELLO,G.GEORGIOU,E.M.STONE,Y.ZHANG JRNL TITL UNCOUPLING INTRAMOLECULAR PROCESSING AND SUBSTRATE JRNL TITL 2 HYDROLYSIS IN THE N-TERMINAL NUCLEOPHILE HYDROLASE HASRGL1 JRNL TITL 3 BY CIRCULAR PERMUTATION. JRNL REF ACS CHEM.BIOL. V. 7 1840 2012 JRNL REFN ISSN 1554-8929 JRNL PMID 22891768 JRNL DOI 10.1021/CB300232N REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 14817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 746 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.56 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.40 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2880 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2407 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2722 REMARK 3 BIN R VALUE (WORKING SET) : 0.2386 REMARK 3 BIN FREE R VALUE : 0.2762 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.49 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 158 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4302 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 127.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.06050 REMARK 3 B22 (A**2) : -9.06050 REMARK 3 B33 (A**2) : 18.12100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.933 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4364 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5899 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1507 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 104 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 647 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4364 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 578 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5238 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.26 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.23 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.39 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|155 - A|462 } REMARK 3 ORIGIN FOR THE GROUP (A): 24.374 41.449 -27.697 REMARK 3 T TENSOR REMARK 3 T11: 0.2908 T22: 1.4135 REMARK 3 T33: -0.2886 T12: 0.3526 REMARK 3 T13: 0.0508 T23: -0.3741 REMARK 3 L TENSOR REMARK 3 L11: -0.3081 L22: 1.5549 REMARK 3 L33: 0.0000 L12: 0.0943 REMARK 3 L13: 0.1811 L23: -1.4297 REMARK 3 S TENSOR REMARK 3 S11: 0.1042 S12: 0.2776 S13: 0.2824 REMARK 3 S21: -0.5613 S22: -0.0294 S23: -0.3686 REMARK 3 S31: -0.8733 S32: 0.1055 S33: -0.0748 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|155 - B|462 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.6435 48.2950 -0.3210 REMARK 3 T TENSOR REMARK 3 T11: 0.5758 T22: 0.5727 REMARK 3 T33: -0.7387 T12: 0.1637 REMARK 3 T13: 0.1400 T23: 0.4004 REMARK 3 L TENSOR REMARK 3 L11: 0.1497 L22: 1.3080 REMARK 3 L33: 0.0000 L12: 0.0602 REMARK 3 L13: 0.2895 L23: -0.6856 REMARK 3 S TENSOR REMARK 3 S11: 0.0815 S12: -0.2454 S13: -0.2753 REMARK 3 S21: -0.5130 S22: 0.3254 S23: 0.1213 REMARK 3 S31: -0.0091 S32: 0.0475 S33: -0.4069 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ET0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000072031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14986 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG3350, 0.15M TRI-POTASSIUM REMARK 280 CITRATE, MICROSEEDING, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 183.42933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 91.71467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 137.57200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 45.85733 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 229.28667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 183.42933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 91.71467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 45.85733 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 137.57200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 229.28667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 155 REMARK 465 GLY A 156 REMARK 465 ALA A 157 REMARK 465 GLN A 158 REMARK 465 LYS A 159 REMARK 465 THR A 160 REMARK 465 ASP A 161 REMARK 465 CYS A 162 REMARK 465 GLN A 163 REMARK 465 LYS A 164 REMARK 465 ASN A 165 REMARK 465 LEU A 166 REMARK 465 GLY A 167 REMARK 465 HIS A 167A REMARK 465 HIS A 167B REMARK 465 HIS A 167C REMARK 465 HIS A 167D REMARK 465 HIS A 167E REMARK 465 HIS A 167F REMARK 465 MET A 167G REMARK 465 GLY A 309 REMARK 465 ALA A 310 REMARK 465 GLY A 311 REMARK 465 SER A 312 REMARK 465 GLY A 313 REMARK 465 ALA A 314 REMARK 465 GLY A 315 REMARK 465 SER A 316 REMARK 465 GLY A 317 REMARK 465 ALA A 318 REMARK 465 GLY A 319 REMARK 465 GLY A 320 REMARK 465 GLN B 158 REMARK 465 LYS B 159 REMARK 465 THR B 160 REMARK 465 ASP B 161 REMARK 465 CYS B 162 REMARK 465 GLN B 163 REMARK 465 LYS B 164 REMARK 465 ASN B 165 REMARK 465 LEU B 166 REMARK 465 GLY B 167 REMARK 465 HIS B 167A REMARK 465 HIS B 167B REMARK 465 HIS B 167C REMARK 465 HIS B 167D REMARK 465 HIS B 167E REMARK 465 HIS B 167F REMARK 465 MET B 167G REMARK 465 GLY B 309 REMARK 465 ALA B 310 REMARK 465 GLY B 311 REMARK 465 SER B 312 REMARK 465 GLY B 313 REMARK 465 ALA B 314 REMARK 465 GLY B 315 REMARK 465 SER B 316 REMARK 465 GLY B 317 REMARK 465 ALA B 318 REMARK 465 GLY B 319 REMARK 465 GLY B 320 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 63 144.00 -173.55 REMARK 500 ASP A 119 -113.61 34.88 REMARK 500 HIS A 153 43.57 -105.21 REMARK 500 ALA A 205 -63.77 -106.75 REMARK 500 ILE A 213 -67.43 -132.08 REMARK 500 ILE A 297 -54.06 -132.44 REMARK 500 ALA B 63 143.58 -174.47 REMARK 500 ASP B 119 -111.78 35.99 REMARK 500 ALA B 205 -63.99 -106.63 REMARK 500 ILE B 213 -66.90 -132.66 REMARK 500 ILE B 297 -44.86 -135.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 55 O REMARK 620 2 GLU A 56 O 91.3 REMARK 620 3 ASP A 58 O 91.9 108.9 REMARK 620 4 PHE A 61 O 115.6 145.2 92.6 REMARK 620 5 ALA A 63 O 109.7 72.3 158.4 77.7 REMARK 620 6 CYS A 65 O 162.7 76.1 81.1 80.8 78.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 55 O REMARK 620 2 GLU B 56 O 82.4 REMARK 620 3 ASP B 58 O 88.3 101.7 REMARK 620 4 PHE B 61 O 121.0 147.6 101.2 REMARK 620 5 ALA B 63 O 104.5 67.8 161.6 83.7 REMARK 620 6 CYS B 65 O 150.8 72.3 83.0 88.1 79.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TKJ RELATED DB: PDB REMARK 900 HUMAN ASPARAGINASE-LIKE PROTEIN 1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF CIRCULARLY PERMUTATED HUMAN ASRGL1 IS DESIGNED WITH REMARK 999 ORIGINAL N- AND C- TERMINAL CONNECTED BY A FLEXIBLE LINKER REMARK 999 GAGSGAGSGAGG AND WITH ORIGINAL ACTIVE SITE NUCLEOPHILE THR168 REMARK 999 EXPOSED AS THE 1ST RESIDUE AT N- TERMINAL. SIX HISTIDING TAG REMARK 999 DESIGNED AT C- TERMINAL. THE ORIGINAL SEQUENCE PRIOR TO PERMUTATION REMARK 999 IS AS FOLLOWING: REMARK 999 MTVGAVALDCKGNVAYATSTGGIVNKMVGRVGDSPCLGAGGYADNDIGAVSTTGHGESIL KVNLARL REMARK 999 TLFHIEQGKTVEEAADLSLGYMKSRVKGLGGLIVVSKTGDWVAKWTSTSMPWA AAKDGKLHFGIDPD REMARK 999 DTTITDLP GAGSGAGSGAGG NPIVVVHGGGAGPISKDRKERVHQGM REMARK 999 VRAATVGYGILREGGSAVDAVEGAVVALEDDPEFNAGCGSVLNTNGEVEMDASIMDGKDL SAGAVSA REMARK 999 REMARK 999 VQCIANPIKLARLVMEKTPHCFLTDQGAAQFAAAMGVPEIPGEKLVTERNKKR LEKEKHEKGAQKTD DBREF 4ET0 A 2 308 UNP Q7L266 ASGL1_HUMAN 2 308 DBREF 4ET0 B 2 308 UNP Q7L266 ASGL1_HUMAN 2 308 SEQADV 4ET0 GLY A 1 UNP Q7L266 LINKER SEQADV 4ET0 HIS A 167A UNP Q7L266 EXPRESSION TAG SEQADV 4ET0 HIS A 167B UNP Q7L266 EXPRESSION TAG SEQADV 4ET0 HIS A 167C UNP Q7L266 EXPRESSION TAG SEQADV 4ET0 HIS A 167D UNP Q7L266 EXPRESSION TAG SEQADV 4ET0 HIS A 167E UNP Q7L266 EXPRESSION TAG SEQADV 4ET0 HIS A 167F UNP Q7L266 EXPRESSION TAG SEQADV 4ET0 MET A 167G UNP Q7L266 SEE REMARK 999 SEQADV 4ET0 GLY A 309 UNP Q7L266 LINKER SEQADV 4ET0 ALA A 310 UNP Q7L266 LINKER SEQADV 4ET0 GLY A 311 UNP Q7L266 LINKER SEQADV 4ET0 SER A 312 UNP Q7L266 LINKER SEQADV 4ET0 GLY A 313 UNP Q7L266 LINKER SEQADV 4ET0 ALA A 314 UNP Q7L266 LINKER SEQADV 4ET0 GLY A 315 UNP Q7L266 LINKER SEQADV 4ET0 SER A 316 UNP Q7L266 LINKER SEQADV 4ET0 GLY A 317 UNP Q7L266 LINKER SEQADV 4ET0 ALA A 318 UNP Q7L266 LINKER SEQADV 4ET0 GLY A 319 UNP Q7L266 LINKER SEQADV 4ET0 GLY A 320 UNP Q7L266 LINKER SEQADV 4ET0 GLY B 1 UNP Q7L266 LINKER SEQADV 4ET0 HIS B 167A UNP Q7L266 EXPRESSION TAG SEQADV 4ET0 HIS B 167B UNP Q7L266 EXPRESSION TAG SEQADV 4ET0 HIS B 167C UNP Q7L266 EXPRESSION TAG SEQADV 4ET0 HIS B 167D UNP Q7L266 EXPRESSION TAG SEQADV 4ET0 HIS B 167E UNP Q7L266 EXPRESSION TAG SEQADV 4ET0 HIS B 167F UNP Q7L266 EXPRESSION TAG SEQADV 4ET0 MET B 167G UNP Q7L266 SEE REMARK 999 SEQADV 4ET0 GLY B 309 UNP Q7L266 LINKER SEQADV 4ET0 ALA B 310 UNP Q7L266 LINKER SEQADV 4ET0 GLY B 311 UNP Q7L266 LINKER SEQADV 4ET0 SER B 312 UNP Q7L266 LINKER SEQADV 4ET0 GLY B 313 UNP Q7L266 LINKER SEQADV 4ET0 ALA B 314 UNP Q7L266 LINKER SEQADV 4ET0 GLY B 315 UNP Q7L266 LINKER SEQADV 4ET0 SER B 316 UNP Q7L266 LINKER SEQADV 4ET0 GLY B 317 UNP Q7L266 LINKER SEQADV 4ET0 ALA B 318 UNP Q7L266 LINKER SEQADV 4ET0 GLY B 319 UNP Q7L266 LINKER SEQADV 4ET0 GLY B 320 UNP Q7L266 LINKER SEQRES 1 A 327 GLY ASN PRO ILE VAL VAL VAL HIS GLY GLY GLY ALA GLY SEQRES 2 A 327 PRO ILE SER LYS ASP ARG LYS GLU ARG VAL HIS GLN GLY SEQRES 3 A 327 MET VAL ARG ALA ALA THR VAL GLY TYR GLY ILE LEU ARG SEQRES 4 A 327 GLU GLY GLY SER ALA VAL ASP ALA VAL GLU GLY ALA VAL SEQRES 5 A 327 VAL ALA LEU GLU ASP ASP PRO GLU PHE ASN ALA GLY CYS SEQRES 6 A 327 GLY SER VAL LEU ASN THR ASN GLY GLU VAL GLU MET ASP SEQRES 7 A 327 ALA SER ILE MET ASP GLY LYS ASP LEU SER ALA GLY ALA SEQRES 8 A 327 VAL SER ALA VAL GLN CYS ILE ALA ASN PRO ILE LYS LEU SEQRES 9 A 327 ALA ARG LEU VAL MET GLU LYS THR PRO HIS CYS PHE LEU SEQRES 10 A 327 THR ASP GLN GLY ALA ALA GLN PHE ALA ALA ALA MET GLY SEQRES 11 A 327 VAL PRO GLU ILE PRO GLY GLU LYS LEU VAL THR GLU ARG SEQRES 12 A 327 ASN LYS LYS ARG LEU GLU LYS GLU LYS HIS GLU LYS GLY SEQRES 13 A 327 ALA GLN LYS THR ASP CYS GLN LYS ASN LEU GLY HIS HIS SEQRES 14 A 327 HIS HIS HIS HIS MET THR VAL GLY ALA VAL ALA LEU ASP SEQRES 15 A 327 CYS LYS GLY ASN VAL ALA TYR ALA THR SER THR GLY GLY SEQRES 16 A 327 ILE VAL ASN LYS MET VAL GLY ARG VAL GLY ASP SER PRO SEQRES 17 A 327 CYS LEU GLY ALA GLY GLY TYR ALA ASP ASN ASP ILE GLY SEQRES 18 A 327 ALA VAL SER THR THR GLY HIS GLY GLU SER ILE LEU LYS SEQRES 19 A 327 VAL ASN LEU ALA ARG LEU THR LEU PHE HIS ILE GLU GLN SEQRES 20 A 327 GLY LYS THR VAL GLU GLU ALA ALA ASP LEU SER LEU GLY SEQRES 21 A 327 TYR MET LYS SER ARG VAL LYS GLY LEU GLY GLY LEU ILE SEQRES 22 A 327 VAL VAL SER LYS THR GLY ASP TRP VAL ALA LYS TRP THR SEQRES 23 A 327 SER THR SER MET PRO TRP ALA ALA ALA LYS ASP GLY LYS SEQRES 24 A 327 LEU HIS PHE GLY ILE ASP PRO ASP ASP THR THR ILE THR SEQRES 25 A 327 ASP LEU PRO GLY ALA GLY SER GLY ALA GLY SER GLY ALA SEQRES 26 A 327 GLY GLY SEQRES 1 B 327 GLY ASN PRO ILE VAL VAL VAL HIS GLY GLY GLY ALA GLY SEQRES 2 B 327 PRO ILE SER LYS ASP ARG LYS GLU ARG VAL HIS GLN GLY SEQRES 3 B 327 MET VAL ARG ALA ALA THR VAL GLY TYR GLY ILE LEU ARG SEQRES 4 B 327 GLU GLY GLY SER ALA VAL ASP ALA VAL GLU GLY ALA VAL SEQRES 5 B 327 VAL ALA LEU GLU ASP ASP PRO GLU PHE ASN ALA GLY CYS SEQRES 6 B 327 GLY SER VAL LEU ASN THR ASN GLY GLU VAL GLU MET ASP SEQRES 7 B 327 ALA SER ILE MET ASP GLY LYS ASP LEU SER ALA GLY ALA SEQRES 8 B 327 VAL SER ALA VAL GLN CYS ILE ALA ASN PRO ILE LYS LEU SEQRES 9 B 327 ALA ARG LEU VAL MET GLU LYS THR PRO HIS CYS PHE LEU SEQRES 10 B 327 THR ASP GLN GLY ALA ALA GLN PHE ALA ALA ALA MET GLY SEQRES 11 B 327 VAL PRO GLU ILE PRO GLY GLU LYS LEU VAL THR GLU ARG SEQRES 12 B 327 ASN LYS LYS ARG LEU GLU LYS GLU LYS HIS GLU LYS GLY SEQRES 13 B 327 ALA GLN LYS THR ASP CYS GLN LYS ASN LEU GLY HIS HIS SEQRES 14 B 327 HIS HIS HIS HIS MET THR VAL GLY ALA VAL ALA LEU ASP SEQRES 15 B 327 CYS LYS GLY ASN VAL ALA TYR ALA THR SER THR GLY GLY SEQRES 16 B 327 ILE VAL ASN LYS MET VAL GLY ARG VAL GLY ASP SER PRO SEQRES 17 B 327 CYS LEU GLY ALA GLY GLY TYR ALA ASP ASN ASP ILE GLY SEQRES 18 B 327 ALA VAL SER THR THR GLY HIS GLY GLU SER ILE LEU LYS SEQRES 19 B 327 VAL ASN LEU ALA ARG LEU THR LEU PHE HIS ILE GLU GLN SEQRES 20 B 327 GLY LYS THR VAL GLU GLU ALA ALA ASP LEU SER LEU GLY SEQRES 21 B 327 TYR MET LYS SER ARG VAL LYS GLY LEU GLY GLY LEU ILE SEQRES 22 B 327 VAL VAL SER LYS THR GLY ASP TRP VAL ALA LYS TRP THR SEQRES 23 B 327 SER THR SER MET PRO TRP ALA ALA ALA LYS ASP GLY LYS SEQRES 24 B 327 LEU HIS PHE GLY ILE ASP PRO ASP ASP THR THR ILE THR SEQRES 25 B 327 ASP LEU PRO GLY ALA GLY SER GLY ALA GLY SER GLY ALA SEQRES 26 B 327 GLY GLY HET NA A 401 1 HET NA B 401 1 HETNAM NA SODIUM ION FORMUL 3 NA 2(NA 1+) HELIX 1 1 SER A 16 GLU A 40 1 25 HELIX 2 2 SER A 43 ASP A 58 1 16 HELIX 3 3 ASN A 100 THR A 112 1 13 HELIX 4 4 ASP A 119 MET A 129 1 11 HELIX 5 5 PRO A 135 VAL A 140 5 6 HELIX 6 6 THR A 141 HIS A 153 1 13 HELIX 7 7 HIS A 221 ASN A 229 1 9 HELIX 8 8 ASN A 229 GLN A 240 1 12 HELIX 9 9 THR A 243 LYS A 260 1 18 HELIX 10 10 SER B 16 GLU B 40 1 25 HELIX 11 11 SER B 43 ASP B 58 1 16 HELIX 12 12 ASN B 100 THR B 112 1 13 HELIX 13 13 ASP B 119 MET B 129 1 11 HELIX 14 14 PRO B 135 LEU B 139 5 5 HELIX 15 15 THR B 141 LYS B 155 1 15 HELIX 16 16 HIS B 221 ASN B 229 1 9 HELIX 17 17 ASN B 229 GLN B 240 1 12 HELIX 18 18 THR B 243 LYS B 260 1 18 SHEET 1 A 9 LEU A 117 THR A 118 0 SHEET 2 A 9 ALA A 89 VAL A 95 1 N ALA A 91 O LEU A 117 SHEET 3 A 9 MET A 77 ASP A 83 -1 N MET A 77 O VAL A 95 SHEET 4 A 9 VAL A 180 THR A 186 -1 O THR A 186 N ASP A 78 SHEET 5 A 9 VAL A 169 LEU A 174 -1 N VAL A 169 O SER A 185 SHEET 6 A 9 ILE A 4 HIS A 8 -1 N VAL A 6 O VAL A 172 SHEET 7 A 9 TRP A 285 LYS A 289 -1 O ALA A 286 N VAL A 7 SHEET 8 A 9 LYS A 292 GLY A 296 -1 O HIS A 294 N ALA A 287 SHEET 9 A 9 THR A 303 ASP A 306 -1 O THR A 305 N LEU A 293 SHEET 1 B 4 GLY A 207 ASP A 210 0 SHEET 2 B 4 GLY A 214 GLY A 220 -1 O VAL A 216 N TYR A 208 SHEET 3 B 4 GLY A 263 SER A 269 -1 O GLY A 264 N THR A 219 SHEET 4 B 4 TRP A 274 TRP A 278 -1 O LYS A 277 N LEU A 265 SHEET 1 C 9 LEU B 117 THR B 118 0 SHEET 2 C 9 ALA B 89 VAL B 95 1 N ALA B 91 O LEU B 117 SHEET 3 C 9 MET B 77 ASP B 83 -1 N MET B 77 O VAL B 95 SHEET 4 C 9 VAL B 180 THR B 186 -1 O THR B 186 N ASP B 78 SHEET 5 C 9 VAL B 169 LEU B 174 -1 N ALA B 171 O ALA B 183 SHEET 6 C 9 ILE B 4 HIS B 8 -1 N VAL B 6 O VAL B 172 SHEET 7 C 9 TRP B 285 LYS B 289 -1 O ALA B 286 N VAL B 7 SHEET 8 C 9 LYS B 292 GLY B 296 -1 O HIS B 294 N ALA B 287 SHEET 9 C 9 THR B 302 ASP B 306 -1 O THR B 305 N LEU B 293 SHEET 1 D 4 GLY B 207 ASP B 210 0 SHEET 2 D 4 GLY B 214 GLY B 220 -1 O VAL B 216 N TYR B 208 SHEET 3 D 4 GLY B 263 SER B 269 -1 O GLY B 264 N THR B 219 SHEET 4 D 4 TRP B 274 TRP B 278 -1 O LYS B 277 N LEU B 265 LINK O LEU A 55 NA NA A 401 1555 1555 2.23 LINK O GLU A 56 NA NA A 401 1555 1555 2.74 LINK O ASP A 58 NA NA A 401 1555 1555 2.22 LINK O PHE A 61 NA NA A 401 1555 1555 2.88 LINK O ALA A 63 NA NA A 401 1555 1555 2.48 LINK O CYS A 65 NA NA A 401 1555 1555 2.48 LINK O LEU B 55 NA NA B 401 1555 1555 2.38 LINK O GLU B 56 NA NA B 401 1555 1555 2.97 LINK O ASP B 58 NA NA B 401 1555 1555 2.22 LINK O PHE B 61 NA NA B 401 1555 1555 2.59 LINK O ALA B 63 NA NA B 401 1555 1555 2.50 LINK O CYS B 65 NA NA B 401 1555 1555 2.42 CISPEP 1 GLY B 13 PRO B 14 0 2.99 SITE 1 AC1 6 LEU A 55 GLU A 56 ASP A 58 PHE A 61 SITE 2 AC1 6 ALA A 63 CYS A 65 SITE 1 AC2 6 LEU B 55 GLU B 56 ASP B 58 PHE B 61 SITE 2 AC2 6 ALA B 63 CYS B 65 CRYST1 108.638 108.638 275.144 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009205 0.005314 0.000000 0.00000 SCALE2 0.000000 0.010629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003634 0.00000