HEADER TRANSFERASE 25-APR-12 4EU1 TITLE STRUCTURE OF A MITOCHONDRIAL ASPARTATE AMINOTRANSFERASE FROM TITLE 2 TRYPANOSOMA BRUCEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL ASPARTATE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-388; COMPND 5 EC: 2.6.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 STRAIN: TREU927; SOURCE 5 GENE: TB11.02.2740; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, ASPARTATE AMINOTRANSFERASE, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 PYRIDOXALPHOSPHATE LYSINE, MITOCHONDRIAL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 6 06-DEC-23 4EU1 1 REMARK REVDAT 5 13-SEP-23 4EU1 1 REMARK SEQADV LINK REVDAT 4 20-MAY-15 4EU1 1 JRNL REVDAT 3 13-MAY-15 4EU1 1 JRNL REMARK REVDAT 2 06-MAY-15 4EU1 1 JRNL REVDAT 1 16-MAY-12 4EU1 0 JRNL AUTH J.ABENDROTH,R.CHOI,A.WALL,M.C.CLIFTON,C.M.LUKACS,B.L.STAKER, JRNL AUTH 2 W.VAN VOORHIS,P.MYLER,D.D.LORIMER,T.E.EDWARDS JRNL TITL STRUCTURES OF ASPARTATE AMINOTRANSFERASES FROM TRYPANOSOMA JRNL TITL 2 BRUCEI, LEISHMANIA MAJOR AND GIARDIA LAMBLIA. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 71 566 2015 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 1744-3091 JRNL PMID 25945710 JRNL DOI 10.1107/S2053230X15001831 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 38947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1963 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2612 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5844 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 364 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.54000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.333 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.237 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.506 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6011 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3993 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8175 ; 1.375 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9718 ; 1.081 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 768 ; 5.654 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 257 ;34.461 ;23.463 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 939 ;14.467 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;20.332 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 911 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6784 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1231 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 0 A 8 A 387 0 REMARK 3 0 B 8 B 387 0 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 388 REMARK 3 ORIGIN FOR THE GROUP (A): 38.5830 28.3300 52.1500 REMARK 3 T TENSOR REMARK 3 T11: 0.2118 T22: 0.0402 REMARK 3 T33: 0.0490 T12: 0.0141 REMARK 3 T13: 0.0918 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.5261 L22: 0.3248 REMARK 3 L33: 2.2152 L12: 0.0435 REMARK 3 L13: -0.3614 L23: 0.2189 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: 0.0524 S13: -0.0025 REMARK 3 S21: 0.0013 S22: 0.0590 S23: 0.0162 REMARK 3 S31: 0.0168 S32: -0.0077 S33: -0.0862 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 388 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9390 26.8290 85.4590 REMARK 3 T TENSOR REMARK 3 T11: 0.1466 T22: 0.0297 REMARK 3 T33: 0.0518 T12: 0.0105 REMARK 3 T13: 0.0812 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.6146 L22: 0.6617 REMARK 3 L33: 2.4012 L12: -0.0147 REMARK 3 L13: -0.6228 L23: 0.0820 REMARK 3 S TENSOR REMARK 3 S11: 0.0373 S12: -0.0115 S13: 0.0758 REMARK 3 S21: -0.0491 S22: 0.0499 S23: 0.0027 REMARK 3 S31: -0.0139 S32: -0.1034 S33: -0.0872 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4EU1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000072068. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : RIGAKU VARIMAX REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38947 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.53200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: PDB ENTRY 4EFF MODIFIED WITH CCP4 PROGRAM CHAINSAW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EMERALDBIO WIZARD CLASSIC 3/4 B7: 20% REMARK 280 PEG 3350, 200MM AMMONIUM NITRATE, TRBRA.34891.A.A1 PW34891 AT REMARK 280 27.7 MG/ML, TRAY 232857G1, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.12500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 PRO A 4 REMARK 465 ASP A 5 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 THR B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 ALA B -7 REMARK 465 GLN B -6 REMARK 465 THR B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LYS B 3 REMARK 465 PRO B 4 REMARK 465 ASP B 5 REMARK 465 PRO B 6 REMARK 465 ILE B 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 7 CG1 CG2 CD1 REMARK 470 LEU A 8 CG CD1 CD2 REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 MET A 16 CG SD CE REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 224 CG OD1 OD2 REMARK 470 GLU A 257 CG CD OE1 OE2 REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 GLU A 355 CG CD OE1 OE2 REMARK 470 LEU B 8 CG CD1 CD2 REMARK 470 GLN B 12 CG CD OE1 NE2 REMARK 470 ARG B 15 CG CD NE CZ NH1 NH2 REMARK 470 MET B 16 CG SD CE REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 ARG B 80 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 112 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 GLN B 211 CG CD OE1 NE2 REMARK 470 ARG B 261 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 346 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 347 CG CD OE1 OE2 REMARK 470 GLU B 355 CG CD OE1 OE2 REMARK 470 ASN B 363 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 139 -62.36 -149.99 REMARK 500 ASN A 148 77.63 -117.53 REMARK 500 TYR A 242 -84.95 -4.16 REMARK 500 ARG A 245 71.48 58.07 REMARK 500 TYR A 274 8.82 -150.07 REMARK 500 ASN A 275 -65.57 78.09 REMARK 500 TYR B 139 -63.69 -150.52 REMARK 500 ASN B 148 78.48 -119.42 REMARK 500 TYR B 242 -82.81 -6.58 REMARK 500 ARG B 245 72.35 57.33 REMARK 500 TYR B 274 9.54 -151.02 REMARK 500 ASN B 275 -64.65 76.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TRBRA.01471.A RELATED DB: TARGETTRACK DBREF 4EU1 A 1 388 UNP Q964F0 Q964F0_9TRYP 1 388 DBREF 4EU1 B 1 388 UNP Q964F0 Q964F0_9TRYP 1 388 SEQADV 4EU1 MET A -20 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 ALA A -19 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 HIS A -18 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 HIS A -17 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 HIS A -16 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 HIS A -15 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 HIS A -14 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 HIS A -13 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 MET A -12 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 GLY A -11 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 THR A -10 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 LEU A -9 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 GLU A -8 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 ALA A -7 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 GLN A -6 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 THR A -5 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 GLN A -4 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 GLY A -3 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 PRO A -2 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 GLY A -1 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 SER A 0 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 ILE A 251 UNP Q964F0 LEU 251 CONFLICT SEQADV 4EU1 ASN A 275 UNP Q964F0 SER 275 CONFLICT SEQADV 4EU1 MET B -20 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 ALA B -19 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 HIS B -18 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 HIS B -17 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 HIS B -16 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 HIS B -15 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 HIS B -14 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 HIS B -13 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 MET B -12 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 GLY B -11 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 THR B -10 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 LEU B -9 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 GLU B -8 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 ALA B -7 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 GLN B -6 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 THR B -5 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 GLN B -4 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 GLY B -3 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 PRO B -2 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 GLY B -1 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 SER B 0 UNP Q964F0 EXPRESSION TAG SEQADV 4EU1 ILE B 251 UNP Q964F0 LEU 251 CONFLICT SEQADV 4EU1 ASN B 275 UNP Q964F0 SER 275 CONFLICT SEQRES 1 A 409 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 409 ALA GLN THR GLN GLY PRO GLY SER MET GLY LYS PRO ASP SEQRES 3 A 409 PRO ILE LEU GLY LEU GLY GLN ASP PHE ARG MET ASP PRO SEQRES 4 A 409 ALA LYS ARG LYS VAL ASN LEU SER ILE GLY VAL TYR ARG SEQRES 5 A 409 ASP ASP ALA ASP GLN PRO PHE VAL LEU GLU CYS VAL LYS SEQRES 6 A 409 GLN ALA THR LEU GLY THR ASN MET ASP TYR ALA PRO VAL SEQRES 7 A 409 THR GLY ILE ALA SER PHE VAL GLU GLU ALA GLN LYS LEU SEQRES 8 A 409 CYS PHE GLY PRO THR CYS ALA ALA LEU ARG ASP GLY ARG SEQRES 9 A 409 ILE ALA SER CYS GLN THR LEU GLY GLY THR GLY ALA LEU SEQRES 10 A 409 ARG ILE GLY GLY ASP LEU LEU ASN ARG PHE VAL ALA ASN SEQRES 11 A 409 CYS ASN ARG ILE TYR GLY PRO ASP VAL GLY TYR PRO ASN SEQRES 12 A 409 HIS GLU SER ILE PHE ALA LYS ALA GLY MET GLU LEU THR SEQRES 13 A 409 PRO TYR SER TYR TYR ASP PRO ALA THR LYS GLY LEU ASN SEQRES 14 A 409 LEU ALA GLY MET LEU GLU CYS LEU ASP LYS ALA PRO GLU SEQRES 15 A 409 GLY SER VAL ILE LEU VAL HIS ALA CYS ALA HIS ASN PRO SEQRES 16 A 409 THR GLY VAL ASP PRO THR HIS ASP ASP TRP ARG GLN VAL SEQRES 17 A 409 CYS ASP VAL ILE LYS ARG ARG ASN HIS ILE PRO PHE VAL SEQRES 18 A 409 ASP MET ALA TYR GLN GLY PHE ALA THR GLY GLN LEU ASP SEQRES 19 A 409 TYR ASP ALA PHE VAL PRO ARG HIS LEU VAL ASP MET VAL SEQRES 20 A 409 PRO ASN LEU ILE VAL ALA GLN SER PHE SER LLP ASN PHE SEQRES 21 A 409 GLY LEU TYR GLY HIS ARG CYS GLY ALA LEU HIS ILE SER SEQRES 22 A 409 THR ALA SER ALA GLU GLU ALA LYS ARG LEU VAL SER GLN SEQRES 23 A 409 LEU ALA LEU LEU ILE ARG PRO MET TYR ASN ASN PRO PRO SEQRES 24 A 409 LEU TYR GLY ALA TRP VAL VAL SER SER ILE LEU LYS ASP SEQRES 25 A 409 PRO GLN LEU THR ALA LEU TRP LYS LYS GLU LEU LYS GLN SEQRES 26 A 409 MET SER SER ARG ILE ALA GLU VAL ARG LYS ARG LEU VAL SEQRES 27 A 409 SER GLU LEU LYS ALA CYS GLY SER VAL HIS ASP TRP SER SEQRES 28 A 409 HIS ILE GLU ARG GLN VAL GLY MET MET ALA TYR THR GLY SEQRES 29 A 409 LEU THR ARG GLU GLN VAL GLU LEU LEU ARG SER GLU TYR SEQRES 30 A 409 HIS ILE TYR MET THR LEU ASN GLY ARG ALA ALA VAL SER SEQRES 31 A 409 GLY LEU ASN SER THR ASN VAL GLU TYR VAL SER GLN ALA SEQRES 32 A 409 ILE HIS ASN VAL THR LYS SEQRES 1 B 409 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 409 ALA GLN THR GLN GLY PRO GLY SER MET GLY LYS PRO ASP SEQRES 3 B 409 PRO ILE LEU GLY LEU GLY GLN ASP PHE ARG MET ASP PRO SEQRES 4 B 409 ALA LYS ARG LYS VAL ASN LEU SER ILE GLY VAL TYR ARG SEQRES 5 B 409 ASP ASP ALA ASP GLN PRO PHE VAL LEU GLU CYS VAL LYS SEQRES 6 B 409 GLN ALA THR LEU GLY THR ASN MET ASP TYR ALA PRO VAL SEQRES 7 B 409 THR GLY ILE ALA SER PHE VAL GLU GLU ALA GLN LYS LEU SEQRES 8 B 409 CYS PHE GLY PRO THR CYS ALA ALA LEU ARG ASP GLY ARG SEQRES 9 B 409 ILE ALA SER CYS GLN THR LEU GLY GLY THR GLY ALA LEU SEQRES 10 B 409 ARG ILE GLY GLY ASP LEU LEU ASN ARG PHE VAL ALA ASN SEQRES 11 B 409 CYS ASN ARG ILE TYR GLY PRO ASP VAL GLY TYR PRO ASN SEQRES 12 B 409 HIS GLU SER ILE PHE ALA LYS ALA GLY MET GLU LEU THR SEQRES 13 B 409 PRO TYR SER TYR TYR ASP PRO ALA THR LYS GLY LEU ASN SEQRES 14 B 409 LEU ALA GLY MET LEU GLU CYS LEU ASP LYS ALA PRO GLU SEQRES 15 B 409 GLY SER VAL ILE LEU VAL HIS ALA CYS ALA HIS ASN PRO SEQRES 16 B 409 THR GLY VAL ASP PRO THR HIS ASP ASP TRP ARG GLN VAL SEQRES 17 B 409 CYS ASP VAL ILE LYS ARG ARG ASN HIS ILE PRO PHE VAL SEQRES 18 B 409 ASP MET ALA TYR GLN GLY PHE ALA THR GLY GLN LEU ASP SEQRES 19 B 409 TYR ASP ALA PHE VAL PRO ARG HIS LEU VAL ASP MET VAL SEQRES 20 B 409 PRO ASN LEU ILE VAL ALA GLN SER PHE SER LLP ASN PHE SEQRES 21 B 409 GLY LEU TYR GLY HIS ARG CYS GLY ALA LEU HIS ILE SER SEQRES 22 B 409 THR ALA SER ALA GLU GLU ALA LYS ARG LEU VAL SER GLN SEQRES 23 B 409 LEU ALA LEU LEU ILE ARG PRO MET TYR ASN ASN PRO PRO SEQRES 24 B 409 LEU TYR GLY ALA TRP VAL VAL SER SER ILE LEU LYS ASP SEQRES 25 B 409 PRO GLN LEU THR ALA LEU TRP LYS LYS GLU LEU LYS GLN SEQRES 26 B 409 MET SER SER ARG ILE ALA GLU VAL ARG LYS ARG LEU VAL SEQRES 27 B 409 SER GLU LEU LYS ALA CYS GLY SER VAL HIS ASP TRP SER SEQRES 28 B 409 HIS ILE GLU ARG GLN VAL GLY MET MET ALA TYR THR GLY SEQRES 29 B 409 LEU THR ARG GLU GLN VAL GLU LEU LEU ARG SER GLU TYR SEQRES 30 B 409 HIS ILE TYR MET THR LEU ASN GLY ARG ALA ALA VAL SER SEQRES 31 B 409 GLY LEU ASN SER THR ASN VAL GLU TYR VAL SER GLN ALA SEQRES 32 B 409 ILE HIS ASN VAL THR LYS MODRES 4EU1 LLP A 237 LYS MODRES 4EU1 LLP B 237 LYS HET LLP A 237 24 HET LLP B 237 24 HET EDO A 400 4 HET CL A 401 1 HET CL A 402 1 HET CL A 403 1 HET EDO A 404 4 HET CL B 401 1 HET CL B 402 1 HET EDO B 403 4 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 EDO 3(C2 H6 O2) FORMUL 4 CL 5(CL 1-) FORMUL 11 HOH *364(H2 O) HELIX 1 1 PRO A 6 ASP A 17 1 12 HELIX 2 2 LEU A 40 GLN A 45 1 6 HELIX 3 3 ILE A 60 GLY A 73 1 14 HELIX 4 4 CYS A 76 ASP A 81 1 6 HELIX 5 5 LEU A 90 LEU A 103 1 14 HELIX 6 6 ASN A 104 PHE A 106 5 3 HELIX 7 7 ASN A 122 ALA A 130 1 9 HELIX 8 8 ASN A 148 ALA A 159 1 12 HELIX 9 9 THR A 180 ARG A 194 1 15 HELIX 10 10 GLN A 211 ALA A 216 1 6 HELIX 11 11 ALA A 216 ASP A 224 1 9 HELIX 12 12 LEU A 241 ARG A 245 5 5 HELIX 13 13 SER A 255 ASN A 275 1 21 HELIX 14 14 PRO A 278 ASP A 291 1 14 HELIX 15 15 ASP A 291 CYS A 323 1 33 HELIX 16 16 TRP A 329 GLN A 335 1 7 HELIX 17 17 THR A 345 HIS A 357 1 13 HELIX 18 18 SER A 369 LEU A 371 5 3 HELIX 19 19 ASN A 375 LYS A 388 1 14 HELIX 20 20 GLY B 9 ASP B 17 1 9 HELIX 21 21 LEU B 40 GLN B 45 1 6 HELIX 22 22 ILE B 60 GLY B 73 1 14 HELIX 23 23 CYS B 76 ASP B 81 1 6 HELIX 24 24 LEU B 90 VAL B 107 1 18 HELIX 25 25 PRO B 121 ALA B 130 1 10 HELIX 26 26 ASN B 148 ALA B 159 1 12 HELIX 27 27 THR B 180 ARG B 194 1 15 HELIX 28 28 GLN B 211 ALA B 216 1 6 HELIX 29 29 ALA B 216 VAL B 223 1 8 HELIX 30 30 LEU B 241 ARG B 245 5 5 HELIX 31 31 SER B 255 ASN B 275 1 21 HELIX 32 32 PRO B 278 ASP B 291 1 14 HELIX 33 33 ASP B 291 CYS B 323 1 33 HELIX 34 34 TRP B 329 GLN B 335 1 7 HELIX 35 35 THR B 345 HIS B 357 1 13 HELIX 36 36 SER B 369 LEU B 371 5 3 HELIX 37 37 ASN B 375 LYS B 388 1 14 SHEET 1 A 2 VAL A 23 ASN A 24 0 SHEET 2 A 2 ILE A 358 TYR A 359 1 O TYR A 359 N VAL A 23 SHEET 1 B 7 ILE A 84 THR A 89 0 SHEET 2 B 7 GLY A 247 SER A 252 -1 O ILE A 251 N ALA A 85 SHEET 3 B 7 ILE A 230 SER A 234 -1 N GLN A 233 O ALA A 248 SHEET 4 B 7 ILE A 197 MET A 202 1 N VAL A 200 O ILE A 230 SHEET 5 B 7 VAL A 164 HIS A 168 1 N ILE A 165 O PHE A 199 SHEET 6 B 7 ARG A 112 PRO A 116 1 N TYR A 114 O LEU A 166 SHEET 7 B 7 GLU A 133 TYR A 137 1 O THR A 135 N ILE A 113 SHEET 1 C 2 TYR A 140 ASP A 141 0 SHEET 2 C 2 GLY A 146 LEU A 147 -1 O GLY A 146 N ASP A 141 SHEET 1 D 2 MET A 339 TYR A 341 0 SHEET 2 D 2 ARG A 365 ALA A 367 -1 O ALA A 366 N ALA A 340 SHEET 1 E 2 VAL B 23 ASN B 24 0 SHEET 2 E 2 ILE B 358 TYR B 359 1 O TYR B 359 N VAL B 23 SHEET 1 F 7 ILE B 84 THR B 89 0 SHEET 2 F 7 GLY B 247 SER B 252 -1 O ILE B 251 N ALA B 85 SHEET 3 F 7 ILE B 230 SER B 234 -1 N GLN B 233 O ALA B 248 SHEET 4 F 7 ILE B 197 MET B 202 1 N MET B 202 O ALA B 232 SHEET 5 F 7 VAL B 164 HIS B 168 1 N ILE B 165 O PHE B 199 SHEET 6 F 7 ARG B 112 PRO B 116 1 N TYR B 114 O LEU B 166 SHEET 7 F 7 GLU B 133 TYR B 137 1 O THR B 135 N ILE B 113 SHEET 1 G 2 TYR B 140 ASP B 141 0 SHEET 2 G 2 GLY B 146 LEU B 147 -1 O GLY B 146 N ASP B 141 SHEET 1 H 2 MET B 339 TYR B 341 0 SHEET 2 H 2 ARG B 365 ALA B 367 -1 O ALA B 366 N ALA B 340 LINK C SER A 236 N LLP A 237 1555 1555 1.34 LINK C LLP A 237 N ASN A 238 1555 1555 1.33 LINK C SER B 236 N LLP B 237 1555 1555 1.33 LINK C LLP B 237 N ASN B 238 1555 1555 1.35 CISPEP 1 ASN A 173 PRO A 174 0 17.02 CISPEP 2 ASN B 173 PRO B 174 0 18.57 SITE 1 AC1 8 HIS A 244 PRO A 278 LEU A 279 TYR A 280 SITE 2 AC1 8 HIS B 244 PRO B 278 LEU B 279 TYR B 280 SITE 1 AC2 4 HIS A 181 ARG A 185 PHE A 217 VAL B 326 SITE 1 AC3 1 ARG A 315 SITE 1 AC4 1 TYR A 30 SITE 1 AC5 7 LYS A 145 ASP A 328 TRP A 329 HIS A 331 SITE 2 AC5 7 THR A 342 GLY A 343 HOH A 650 SITE 1 AC6 4 VAL A 326 HIS B 181 ARG B 185 PHE B 217 SITE 1 AC7 1 ARG B 315 SITE 1 AC8 5 LYS B 145 ASP B 328 TRP B 329 THR B 342 SITE 2 AC8 5 GLY B 343 CRYST1 62.260 96.250 81.320 90.00 111.62 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016062 0.000000 0.006366 0.00000 SCALE2 0.000000 0.010390 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013228 0.00000