HEADER TRANSFERASE 25-APR-12 4EUM TITLE CRYSTAL STRUCTURE OF A SUGAR KINASE (TARGET EFI-502132) FROM TITLE 2 OCEANICOLA GRANULOSUS WITH BOUND AMP, CRYSTAL FORM II COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-DEHYDRO-3-DEOXYGLUCONOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.45; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OCEANICOLA GRANULOSUS; SOURCE 3 ORGANISM_TAXID: 314256; SOURCE 4 STRAIN: HTCC2516; SOURCE 5 GENE: OG2516_05533; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS PUTATIVE SUGAR KINASE, ENZYME FUNCTION INITIATIVE, EFI, STRUCTURAL KEYWDS 2 GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN, AUTHOR 2 S.SOJITRA,E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, AUTHOR 3 B.HILLERICH,J.LOVE,R.D.SEIDEL,H.J.IMKER,J.A.GERLT,S.C.ALMO,ENZYME AUTHOR 4 FUNCTION INITIATIVE (EFI) REVDAT 3 13-SEP-23 4EUM 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4EUM 1 REMARK REVDAT 1 16-MAY-12 4EUM 0 JRNL AUTH M.W.VETTING,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO, JRNL AUTH 2 S.R.WASSERMAN,S.SOJITRA,E.WASHINGTON,A.SCOTT GLENN, JRNL AUTH 3 S.CHOWDHURY,B.EVANS,J.HAMMONDS,B.HILLERICH,J.LOVE, JRNL AUTH 4 R.D.SEIDEL,H.J.IMKER,J.A.GERLT,S.C.ALMO, JRNL AUTH 5 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF A SUGAR KINASE (TARGET EFI-502132) FROM JRNL TITL 2 OCEANICOLA GRANULOSUS WITH BOUND AMP, CRYSTAL FORM II JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 56598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.2015 - 4.8770 0.87 2549 130 0.2069 0.2247 REMARK 3 2 4.8770 - 3.8746 0.93 2651 157 0.1368 0.1662 REMARK 3 3 3.8746 - 3.3859 0.93 2620 162 0.1474 0.1929 REMARK 3 4 3.3859 - 3.0768 0.95 2649 155 0.1578 0.2060 REMARK 3 5 3.0768 - 2.8565 0.96 2727 132 0.1815 0.2392 REMARK 3 6 2.8565 - 2.6883 0.96 2706 145 0.1805 0.2761 REMARK 3 7 2.6883 - 2.5537 0.96 2713 137 0.1694 0.2090 REMARK 3 8 2.5537 - 2.4426 0.97 2722 146 0.1645 0.1928 REMARK 3 9 2.4426 - 2.3487 0.97 2689 150 0.1714 0.2168 REMARK 3 10 2.3487 - 2.2677 0.97 2738 144 0.1718 0.2122 REMARK 3 11 2.2677 - 2.1968 0.96 2665 155 0.1726 0.2340 REMARK 3 12 2.1968 - 2.1340 0.97 2737 142 0.1778 0.2324 REMARK 3 13 2.1340 - 2.0779 0.97 2713 142 0.1758 0.2148 REMARK 3 14 2.0779 - 2.0272 0.97 2756 108 0.1771 0.2087 REMARK 3 15 2.0272 - 1.9811 0.97 2678 131 0.1846 0.2289 REMARK 3 16 1.9811 - 1.9390 0.97 2725 141 0.2073 0.2764 REMARK 3 17 1.9390 - 1.9002 0.96 2684 140 0.2351 0.3244 REMARK 3 18 1.9002 - 1.8643 0.96 2701 145 0.2826 0.3786 REMARK 3 19 1.8643 - 1.8310 0.95 2643 136 0.3052 0.3788 REMARK 3 20 1.8310 - 1.8000 0.96 2685 149 0.3201 0.3944 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.42 REMARK 3 B_SOL : 54.18 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.62080 REMARK 3 B22 (A**2) : 4.37880 REMARK 3 B33 (A**2) : -1.75800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.26180 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4631 REMARK 3 ANGLE : 1.109 6321 REMARK 3 CHIRALITY : 0.074 708 REMARK 3 PLANARITY : 0.004 836 REMARK 3 DIHEDRAL : 13.903 1641 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ -13:1) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7240 55.9844 120.8078 REMARK 3 T TENSOR REMARK 3 T11: 0.2250 T22: 0.2906 REMARK 3 T33: 0.1728 T12: 0.0267 REMARK 3 T13: -0.0113 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.7891 L22: 1.5280 REMARK 3 L33: 4.9125 L12: 0.5566 REMARK 3 L13: 0.4840 L23: 2.6403 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: 0.2734 S13: -0.1107 REMARK 3 S21: -0.2206 S22: -0.0180 S23: 0.1220 REMARK 3 S31: -0.2583 S32: -0.0870 S33: 0.0616 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 2:40) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7844 44.7003 99.2008 REMARK 3 T TENSOR REMARK 3 T11: 0.2294 T22: 0.1373 REMARK 3 T33: 0.1761 T12: -0.0188 REMARK 3 T13: -0.0119 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.9915 L22: 0.5843 REMARK 3 L33: 1.5508 L12: 0.0808 REMARK 3 L13: -0.2645 L23: -0.4511 REMARK 3 S TENSOR REMARK 3 S11: -0.0889 S12: 0.0030 S13: -0.0205 REMARK 3 S21: -0.2823 S22: 0.0411 S23: -0.0109 REMARK 3 S31: 0.1805 S32: 0.0845 S33: 0.0493 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 41:124) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6939 55.7380 100.6794 REMARK 3 T TENSOR REMARK 3 T11: 0.1687 T22: 0.1396 REMARK 3 T33: 0.1995 T12: 0.0214 REMARK 3 T13: -0.0278 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 1.5261 L22: 1.4365 REMARK 3 L33: 2.1210 L12: 0.1208 REMARK 3 L13: -0.0662 L23: 0.4146 REMARK 3 S TENSOR REMARK 3 S11: -0.0150 S12: 0.1912 S13: 0.1721 REMARK 3 S21: -0.1188 S22: -0.0488 S23: 0.2196 REMARK 3 S31: -0.2817 S32: -0.2053 S33: 0.0391 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 125:204) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8812 54.9177 108.3468 REMARK 3 T TENSOR REMARK 3 T11: 0.1534 T22: 0.1005 REMARK 3 T33: 0.1593 T12: -0.0284 REMARK 3 T13: -0.0030 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.7046 L22: 0.9646 REMARK 3 L33: 1.3904 L12: -0.2448 REMARK 3 L13: 0.3432 L23: -0.1999 REMARK 3 S TENSOR REMARK 3 S11: -0.0938 S12: 0.1372 S13: 0.1367 REMARK 3 S21: -0.1001 S22: -0.0255 S23: -0.0280 REMARK 3 S31: -0.0733 S32: 0.1792 S33: 0.1063 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 205:288) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3473 39.7542 115.8356 REMARK 3 T TENSOR REMARK 3 T11: 0.1494 T22: 0.0795 REMARK 3 T33: 0.1516 T12: 0.0203 REMARK 3 T13: -0.0169 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 2.0284 L22: 1.7496 REMARK 3 L33: 1.2834 L12: 0.0501 REMARK 3 L13: -0.1437 L23: -0.8907 REMARK 3 S TENSOR REMARK 3 S11: 0.0547 S12: 0.0608 S13: -0.2080 REMARK 3 S21: -0.1374 S22: 0.0156 S23: 0.0036 REMARK 3 S31: 0.1511 S32: -0.0162 S33: -0.0372 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ -13:108) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8497 48.1466 69.6180 REMARK 3 T TENSOR REMARK 3 T11: 0.2819 T22: 0.2707 REMARK 3 T33: 0.1892 T12: 0.0546 REMARK 3 T13: 0.0134 T23: 0.0529 REMARK 3 L TENSOR REMARK 3 L11: 0.4498 L22: 0.0062 REMARK 3 L33: 1.8866 L12: 0.3548 REMARK 3 L13: -1.1169 L23: 0.4355 REMARK 3 S TENSOR REMARK 3 S11: -0.0649 S12: -0.0801 S13: -0.1038 REMARK 3 S21: 0.0872 S22: -0.1110 S23: -0.0633 REMARK 3 S31: 0.3127 S32: 0.1918 S33: 0.1458 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 109:296) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5982 63.2884 60.8629 REMARK 3 T TENSOR REMARK 3 T11: 0.1074 T22: 0.1996 REMARK 3 T33: 0.1402 T12: -0.0060 REMARK 3 T13: 0.0226 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.4222 L22: 2.0476 REMARK 3 L33: 1.9785 L12: -0.4459 REMARK 3 L13: 0.4532 L23: -0.1818 REMARK 3 S TENSOR REMARK 3 S11: -0.0130 S12: -0.0473 S13: -0.0159 REMARK 3 S21: 0.0604 S22: -0.0656 S23: -0.0098 REMARK 3 S31: -0.0107 S32: 0.1348 S33: 0.0657 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EUM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000072088. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56642 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 81.595 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.64500 REMARK 200 R SYM FOR SHELL (I) : 0.64500 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3LHX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES, PH 7.5, 150 MM REMARK 280 SODIUM CHLORIDE, 10% GLYCEROL, 1 MM DTT, 5 MM AMP-PNP), REMARK 280 RESERVOIR (0.2 M MAGNESIUM CHLORIDE, 0.1 M BIS-TRIS, PH 6.5, 25% REMARK 280 PEG3350), CRYOPROTECTANT (RESERVOIR + 20% GLYCEROL), SITTING REMARK 280 DROP, VAPOR DIFFUSION, TEMPERATURE 298K, PH 4.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.76400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 THR A 89 REMARK 465 LEU A 90 REMARK 465 GLU A 91 REMARK 465 GLN A 92 REMARK 465 GLY A 93 REMARK 465 GLU A 94 REMARK 465 ARG A 95 REMARK 465 SER A 96 REMARK 465 GLY A 289 REMARK 465 LYS A 290 REMARK 465 GLY A 291 REMARK 465 ALA A 292 REMARK 465 LEU A 293 REMARK 465 VAL A 294 REMARK 465 GLU A 295 REMARK 465 VAL A 296 REMARK 465 PRO A 297 REMARK 465 SER A 298 REMARK 465 LEU A 299 REMARK 465 ARG A 300 REMARK 465 PRO A 301 REMARK 465 HIS A 302 REMARK 465 ALA A 303 REMARK 465 ASP A 304 REMARK 465 ALA A 305 REMARK 465 MET B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 SER B -15 REMARK 465 SER B -14 REMARK 465 GLU B 91 REMARK 465 GLN B 92 REMARK 465 GLY B 93 REMARK 465 ALA B 246 REMARK 465 GLN B 247 REMARK 465 PRO B 297 REMARK 465 SER B 298 REMARK 465 LEU B 299 REMARK 465 ARG B 300 REMARK 465 PRO B 301 REMARK 465 HIS B 302 REMARK 465 ALA B 303 REMARK 465 ASP B 304 REMARK 465 ALA B 305 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A -6 -164.81 -123.73 REMARK 500 SER A 50 -169.20 -164.61 REMARK 500 ASN A 224 60.68 -155.71 REMARK 500 ALA A 246 -60.60 -91.44 REMARK 500 ASN B -6 -163.28 -123.44 REMARK 500 SER B 50 -170.75 -170.08 REMARK 500 ASN B 224 40.60 -151.11 REMARK 500 ASP B 250 99.75 -163.49 REMARK 500 ALA B 253 -10.55 74.38 REMARK 500 GLN B 288 48.10 -104.61 REMARK 500 GLU B 295 93.03 -56.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 40 O REMARK 620 2 HOH A 581 O 88.2 REMARK 620 3 HOH A 588 O 102.1 81.4 REMARK 620 4 HOH A 666 O 86.6 97.1 171.1 REMARK 620 5 HOH A 669 O 158.0 81.4 95.5 75.6 REMARK 620 6 HOH A 727 O 84.4 172.1 97.8 84.9 106.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E69 RELATED DB: PDB REMARK 900 DIFFERENT CRYSTAL FORM, APO REMARK 900 RELATED ID: 4EBU RELATED DB: PDB REMARK 900 DIFFERENT CRYSTAL FORM, MIX OF AMP AND ADP REMARK 900 RELATED ID: EFI-502132 RELATED DB: TARGETTRACK DBREF 4EUM A 1 305 UNP Q2CIP5 Q2CIP5_9RHOB 1 305 DBREF 4EUM B 1 305 UNP Q2CIP5 Q2CIP5_9RHOB 1 305 SEQADV 4EUM MET A -22 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM HIS A -21 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM HIS A -20 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM HIS A -19 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM HIS A -18 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM HIS A -17 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM HIS A -16 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM SER A -15 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM SER A -14 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM GLY A -13 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM VAL A -12 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM ASP A -11 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM LEU A -10 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM GLY A -9 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM THR A -8 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM GLU A -7 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM ASN A -6 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM LEU A -5 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM TYR A -4 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM PHE A -3 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM GLN A -2 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM SER A -1 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM MET A 0 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM MET B -22 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM HIS B -21 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM HIS B -20 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM HIS B -19 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM HIS B -18 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM HIS B -17 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM HIS B -16 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM SER B -15 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM SER B -14 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM GLY B -13 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM VAL B -12 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM ASP B -11 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM LEU B -10 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM GLY B -9 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM THR B -8 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM GLU B -7 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM ASN B -6 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM LEU B -5 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM TYR B -4 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM PHE B -3 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM GLN B -2 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM SER B -1 UNP Q2CIP5 EXPRESSION TAG SEQADV 4EUM MET B 0 UNP Q2CIP5 EXPRESSION TAG SEQRES 1 A 328 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 328 GLY THR GLU ASN LEU TYR PHE GLN SER MET MET HIS ILE SEQRES 3 A 328 LEU SER ILE GLY GLU CYS MET ALA GLU LEU ALA PRO ALA SEQRES 4 A 328 ASP LEU PRO GLY THR TYR ARG LEU GLY PHE ALA GLY ASP SEQRES 5 A 328 THR PHE ASN THR ALA TRP TYR LEU ALA ARG LEU ARG PRO SEQRES 6 A 328 GLU SER ARG ILE SER TYR PHE SER ALA ILE GLY ASP ASP SEQRES 7 A 328 ALA LEU SER GLN GLN MET ARG ALA ALA MET SER ALA ALA SEQRES 8 A 328 GLY ILE ASP GLY GLY GLY LEU ARG VAL ILE PRO GLY ARG SEQRES 9 A 328 THR VAL GLY LEU TYR LEU ILE THR LEU GLU GLN GLY GLU SEQRES 10 A 328 ARG SER PHE ALA TYR TRP ARG GLY GLN SER ALA ALA ARG SEQRES 11 A 328 GLU LEU ALA GLY ASP ALA ASP ALA LEU ALA ALA ALA MET SEQRES 12 A 328 ALA ARG ALA ASP VAL VAL TYR PHE SER GLY ILE THR LEU SEQRES 13 A 328 ALA ILE LEU ASP GLN CYS GLY ARG ALA THR LEU LEU ARG SEQRES 14 A 328 ALA LEU ALA GLN ALA ARG ALA THR GLY ARG THR ILE ALA SEQRES 15 A 328 PHE ASP PRO ASN LEU ARG PRO ARG LEU TRP ALA GLY THR SEQRES 16 A 328 GLY GLU MET THR GLU THR ILE MET GLN GLY ALA ALA VAL SEQRES 17 A 328 SER ASP ILE ALA LEU PRO SER PHE GLU ASP GLU ALA ALA SEQRES 18 A 328 TRP PHE GLY ASP ALA GLY PRO ASP ALA THR ALA ASP ARG SEQRES 19 A 328 TYR ALA ARG ALA GLY VAL ARG SER VAL VAL VAL LYS ASN SEQRES 20 A 328 GLY PRO HIS ALA VAL HIS PHE LEU GLN ASP GLY ARG ARG SEQRES 21 A 328 GLY ARG VAL PRO VAL PRO PRO VAL ALA GLN VAL VAL ASP SEQRES 22 A 328 THR THR ALA ALA GLY ASP SER PHE ASN ALA GLY LEU LEU SEQRES 23 A 328 ASP SER VAL LEU ALA GLY GLN PRO LEU GLU THR ALA ILE SEQRES 24 A 328 ALA ALA ALA ALA ALA LEU ALA GLY GLN VAL VAL GLN GLY SEQRES 25 A 328 LYS GLY ALA LEU VAL GLU VAL PRO SER LEU ARG PRO HIS SEQRES 26 A 328 ALA ASP ALA SEQRES 1 B 328 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 328 GLY THR GLU ASN LEU TYR PHE GLN SER MET MET HIS ILE SEQRES 3 B 328 LEU SER ILE GLY GLU CYS MET ALA GLU LEU ALA PRO ALA SEQRES 4 B 328 ASP LEU PRO GLY THR TYR ARG LEU GLY PHE ALA GLY ASP SEQRES 5 B 328 THR PHE ASN THR ALA TRP TYR LEU ALA ARG LEU ARG PRO SEQRES 6 B 328 GLU SER ARG ILE SER TYR PHE SER ALA ILE GLY ASP ASP SEQRES 7 B 328 ALA LEU SER GLN GLN MET ARG ALA ALA MET SER ALA ALA SEQRES 8 B 328 GLY ILE ASP GLY GLY GLY LEU ARG VAL ILE PRO GLY ARG SEQRES 9 B 328 THR VAL GLY LEU TYR LEU ILE THR LEU GLU GLN GLY GLU SEQRES 10 B 328 ARG SER PHE ALA TYR TRP ARG GLY GLN SER ALA ALA ARG SEQRES 11 B 328 GLU LEU ALA GLY ASP ALA ASP ALA LEU ALA ALA ALA MET SEQRES 12 B 328 ALA ARG ALA ASP VAL VAL TYR PHE SER GLY ILE THR LEU SEQRES 13 B 328 ALA ILE LEU ASP GLN CYS GLY ARG ALA THR LEU LEU ARG SEQRES 14 B 328 ALA LEU ALA GLN ALA ARG ALA THR GLY ARG THR ILE ALA SEQRES 15 B 328 PHE ASP PRO ASN LEU ARG PRO ARG LEU TRP ALA GLY THR SEQRES 16 B 328 GLY GLU MET THR GLU THR ILE MET GLN GLY ALA ALA VAL SEQRES 17 B 328 SER ASP ILE ALA LEU PRO SER PHE GLU ASP GLU ALA ALA SEQRES 18 B 328 TRP PHE GLY ASP ALA GLY PRO ASP ALA THR ALA ASP ARG SEQRES 19 B 328 TYR ALA ARG ALA GLY VAL ARG SER VAL VAL VAL LYS ASN SEQRES 20 B 328 GLY PRO HIS ALA VAL HIS PHE LEU GLN ASP GLY ARG ARG SEQRES 21 B 328 GLY ARG VAL PRO VAL PRO PRO VAL ALA GLN VAL VAL ASP SEQRES 22 B 328 THR THR ALA ALA GLY ASP SER PHE ASN ALA GLY LEU LEU SEQRES 23 B 328 ASP SER VAL LEU ALA GLY GLN PRO LEU GLU THR ALA ILE SEQRES 24 B 328 ALA ALA ALA ALA ALA LEU ALA GLY GLN VAL VAL GLN GLY SEQRES 25 B 328 LYS GLY ALA LEU VAL GLU VAL PRO SER LEU ARG PRO HIS SEQRES 26 B 328 ALA ASP ALA HET AMP A 401 23 HET CL A 402 1 HET CL A 403 1 HET CL A 404 1 HET MG A 405 1 HET AMP B 401 23 HET CL B 402 1 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION FORMUL 3 AMP 2(C10 H14 N5 O7 P) FORMUL 4 CL 4(CL 1-) FORMUL 7 MG MG 2+ FORMUL 10 HOH *426(H2 O) HELIX 1 1 GLY A 28 ARG A 41 1 14 HELIX 2 2 ASP A 55 ALA A 68 1 14 HELIX 3 3 SER A 104 LEU A 109 5 6 HELIX 4 4 ASP A 112 ALA A 121 1 10 HELIX 5 5 GLY A 130 ILE A 135 1 6 HELIX 6 6 ASP A 137 THR A 154 1 18 HELIX 7 7 ARG A 165 TRP A 169 5 5 HELIX 8 8 GLY A 171 ALA A 184 1 14 HELIX 9 9 SER A 192 GLY A 201 1 10 HELIX 10 10 GLY A 204 ALA A 215 1 12 HELIX 11 11 ALA A 253 ALA A 268 1 16 HELIX 12 12 PRO A 271 GLN A 288 1 18 HELIX 13 13 GLY B 28 ARG B 41 1 14 HELIX 14 14 ASP B 55 ALA B 68 1 14 HELIX 15 15 SER B 104 LEU B 109 5 6 HELIX 16 16 ASP B 112 ALA B 121 1 10 HELIX 17 17 GLY B 130 LEU B 136 1 7 HELIX 18 18 ASP B 137 GLY B 155 1 19 HELIX 19 19 ARG B 165 TRP B 169 5 5 HELIX 20 20 GLY B 171 ALA B 184 1 14 HELIX 21 21 SER B 192 GLY B 201 1 10 HELIX 22 22 GLY B 204 ALA B 215 1 12 HELIX 23 23 ALA B 253 ALA B 268 1 16 HELIX 24 24 PRO B 271 VAL B 287 1 17 SHEET 1 A 9 ILE A 70 ASP A 71 0 SHEET 2 A 9 ARG A 45 PHE A 49 1 N ILE A 46 O ASP A 71 SHEET 3 A 9 HIS A 2 ILE A 6 1 N ILE A 3 O SER A 47 SHEET 4 A 9 VAL A 125 SER A 129 1 O TYR A 127 N LEU A 4 SHEET 5 A 9 THR A 157 ASP A 161 1 O ALA A 159 N VAL A 126 SHEET 6 A 9 ILE A 188 ALA A 189 1 O ILE A 188 N PHE A 160 SHEET 7 A 9 SER A 219 VAL A 222 1 O VAL A 221 N ALA A 189 SHEET 8 A 9 VAL A 229 GLN A 233 -1 O HIS A 230 N VAL A 222 SHEET 9 A 9 ARG A 236 VAL A 240 -1 O VAL A 240 N VAL A 229 SHEET 1 B 8 ALA A 98 TRP A 100 0 SHEET 2 B 8 GLY A 84 LEU A 87 -1 N LEU A 85 O TRP A 100 SHEET 3 B 8 MET A 10 PRO A 15 1 N LEU A 13 O TYR A 86 SHEET 4 B 8 THR A 21 ALA A 27 -1 O ALA A 27 N MET A 10 SHEET 5 B 8 THR B 21 ALA B 27 -1 O TYR B 22 N TYR A 22 SHEET 6 B 8 MET B 10 PRO B 15 -1 N MET B 10 O ALA B 27 SHEET 7 B 8 LEU B 85 THR B 89 1 O ILE B 88 N LEU B 13 SHEET 8 B 8 SER B 96 TRP B 100 -1 O TRP B 100 N LEU B 85 SHEET 1 C 2 ALA A 51 ILE A 52 0 SHEET 2 C 2 ARG A 76 VAL A 77 1 O ARG A 76 N ILE A 52 SHEET 1 D 8 ARG B 45 PHE B 49 0 SHEET 2 D 8 HIS B 2 ILE B 6 1 N SER B 5 O PHE B 49 SHEET 3 D 8 VAL B 125 SER B 129 1 O TYR B 127 N LEU B 4 SHEET 4 D 8 THR B 157 ASP B 161 1 O ALA B 159 N VAL B 126 SHEET 5 D 8 ILE B 188 ALA B 189 1 O ILE B 188 N PHE B 160 SHEET 6 D 8 SER B 219 VAL B 222 1 O VAL B 221 N ALA B 189 SHEET 7 D 8 VAL B 229 GLN B 233 -1 O HIS B 230 N VAL B 222 SHEET 8 D 8 ARG B 236 VAL B 240 -1 O VAL B 240 N VAL B 229 SHEET 1 E 2 ALA B 51 ILE B 52 0 SHEET 2 E 2 ARG B 76 VAL B 77 1 O ARG B 76 N ILE B 52 LINK O LEU A 40 MG MG A 405 1555 1555 2.10 LINK MG MG A 405 O HOH A 581 1555 1555 2.11 LINK MG MG A 405 O HOH A 588 1555 1555 2.08 LINK MG MG A 405 O HOH A 666 1555 1555 2.09 LINK MG MG A 405 O HOH A 669 1555 1555 2.09 LINK MG MG A 405 O HOH A 727 1555 1555 2.08 SITE 1 AC1 14 SER A 192 LYS A 223 ASN A 224 GLY A 225 SITE 2 AC1 14 VAL A 242 ALA A 254 PHE A 258 ALA A 280 SITE 3 AC1 14 ALA A 283 HOH A 506 HOH A 627 HOH A 660 SITE 4 AC1 14 HOH A 681 HOH A 710 SITE 1 AC2 2 GLN B 233 LEU B 272 SITE 1 AC3 3 ARG A 165 PRO A 166 ARG A 167 SITE 1 AC4 4 GLN A 233 LEU A 272 HOH A 590 ASN B -6 SITE 1 AC5 6 LEU A 40 HOH A 581 HOH A 588 HOH A 666 SITE 2 AC5 6 HOH A 669 HOH A 727 SITE 1 AC6 9 SER B 192 GLY B 225 VAL B 248 ALA B 254 SITE 2 AC6 9 PHE B 258 ALA B 280 ALA B 283 HOH B 511 SITE 3 AC6 9 HOH B 694 SITE 1 AC7 3 ARG B 165 PRO B 166 ARG B 167 CRYST1 79.540 49.528 83.267 90.00 101.50 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012572 0.000000 0.002558 0.00000 SCALE2 0.000000 0.020191 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012256 0.00000