data_4EVU # _entry.id 4EVU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4EVU RCSB RCSB072132 WWPDB D_1000072132 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id MCSG-APC101565 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4EVU _pdbx_database_status.recvd_initial_deposition_date 2012-04-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Michalska, K.' 1 'Cui, H.' 2 'Xu, X.' 3 'Brown, R.N.' 4 'Cort, J.R.' 5 'Heffron, F.' 6 'Nakayasu, E.S.' 7 'Savchenko, A.' 8 'Adkins, J.N.' 9 'Joachimiak, A.' 10 'Program for the Characterization of Secreted Effector Proteins (PCSEP)' 11 'Midwest Center for Structural Genomics (MCSG)' 12 # _citation.id primary _citation.title 'Structural and Functional Characterization of DUF1471 Domains of Salmonella Proteins SrfN, YdgH/SssB, and YahO.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 9 _citation.page_first e101787 _citation.page_last e101787 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25010333 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0101787 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Eletsky, A.' 1 primary 'Michalska, K.' 2 primary 'Houliston, S.' 3 primary 'Zhang, Q.' 4 primary 'Daily, M.D.' 5 primary 'Xu, X.' 6 primary 'Cui, H.' 7 primary 'Yee, A.' 8 primary 'Lemak, A.' 9 primary 'Wu, B.' 10 primary 'Garcia, M.' 11 primary 'Burnet, M.C.' 12 primary 'Meyer, K.M.' 13 primary 'Aryal, U.K.' 14 primary 'Sanchez, O.' 15 primary 'Ansong, C.' 16 primary 'Xiao, R.' 17 primary 'Acton, T.B.' 18 primary 'Adkins, J.N.' 19 primary 'Montelione, G.T.' 20 primary 'Joachimiak, A.' 21 primary 'Arrowsmith, C.H.' 22 primary 'Savchenko, A.' 23 primary 'Szyperski, T.' 24 primary 'Cort, J.R.' 25 # _cell.entry_id 4EVU _cell.length_a 39.079 _cell.length_b 52.521 _cell.length_c 39.139 _cell.angle_alpha 90.00 _cell.angle_beta 109.38 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4EVU _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative periplasmic protein ydgH' 8259.871 2 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 142 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GDGTKVEELNKATAA(MSE)(MSE)VPFDSVKFTGNYGN(MSE)TEISYQVAKRAAKKGAKYYHITRQWQERGNNITISA DLYK ; _entity_poly.pdbx_seq_one_letter_code_can GDGTKVEELNKATAAMMVPFDSVKFTGNYGNMTEISYQVAKRAAKKGAKYYHITRQWQERGNNITISADLYK _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier MCSG-APC101565 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASP n 1 3 GLY n 1 4 THR n 1 5 LYS n 1 6 VAL n 1 7 GLU n 1 8 GLU n 1 9 LEU n 1 10 ASN n 1 11 LYS n 1 12 ALA n 1 13 THR n 1 14 ALA n 1 15 ALA n 1 16 MSE n 1 17 MSE n 1 18 VAL n 1 19 PRO n 1 20 PHE n 1 21 ASP n 1 22 SER n 1 23 VAL n 1 24 LYS n 1 25 PHE n 1 26 THR n 1 27 GLY n 1 28 ASN n 1 29 TYR n 1 30 GLY n 1 31 ASN n 1 32 MSE n 1 33 THR n 1 34 GLU n 1 35 ILE n 1 36 SER n 1 37 TYR n 1 38 GLN n 1 39 VAL n 1 40 ALA n 1 41 LYS n 1 42 ARG n 1 43 ALA n 1 44 ALA n 1 45 LYS n 1 46 LYS n 1 47 GLY n 1 48 ALA n 1 49 LYS n 1 50 TYR n 1 51 TYR n 1 52 HIS n 1 53 ILE n 1 54 THR n 1 55 ARG n 1 56 GLN n 1 57 TRP n 1 58 GLN n 1 59 GLU n 1 60 ARG n 1 61 GLY n 1 62 ASN n 1 63 ASN n 1 64 ILE n 1 65 THR n 1 66 ILE n 1 67 SER n 1 68 ALA n 1 69 ASP n 1 70 LEU n 1 71 TYR n 1 72 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'STM1478, ydgH' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain LT2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Salmonella enterica subsp. enterica serovar Typhimurium' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 99287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-CodonPlus(DE3)-RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'p15Tv lic' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8ZPL1_SALTY _struct_ref.pdbx_db_accession Q8ZPL1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DGTKVEELNKATAAMMVPFDSVKFTGNYGNMTEISYQVAKRAAKKGAKYYHITRQWQERGNNITISADLYK _struct_ref.pdbx_align_begin 184 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4EVU A 2 ? 72 ? Q8ZPL1 184 ? 254 ? 244 314 2 1 4EVU B 2 ? 72 ? Q8ZPL1 184 ? 254 ? 244 314 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4EVU GLY A 1 ? UNP Q8ZPL1 ? ? 'EXPRESSION TAG' 183 1 2 4EVU GLY B 1 ? UNP Q8ZPL1 ? ? 'EXPRESSION TAG' 183 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4EVU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_percent_sol 46.37 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details ;0.1 M Na Citrate , 0.2 M K/Na tartrate, 1.9 M (NH4)2SO4, 5% Glycerol, 1/210 trypsin, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 295K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-06-08 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97935 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97935 # _reflns.entry_id 4EVU _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 1.45 _reflns.number_obs 26374 _reflns.number_all 26432 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.2 _reflns.B_iso_Wilson_estimate 17.2 _reflns.pdbx_redundancy 3.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.48 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.576 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.pdbx_redundancy 3.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1279 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4EVU _refine.ls_number_reflns_obs 26330 _refine.ls_number_reflns_all 26330 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.92 _refine.ls_d_res_high 1.45 _refine.ls_percent_reflns_obs 99.21 _refine.ls_R_factor_obs 0.13437 _refine.ls_R_factor_all 0.13437 _refine.ls_R_factor_R_work 0.13257 _refine.ls_R_factor_R_free 0.17157 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 1271 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.977 _refine.correlation_coeff_Fo_to_Fc_free 0.964 _refine.B_iso_mean 15.404 _refine.aniso_B[1][1] 0.08 _refine.aniso_B[2][2] 0.26 _refine.aniso_B[3][3] -0.34 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -2.93 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGEN ATOMS HAVE BEEN ADDED AT THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model anisotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.013 _refine.pdbx_overall_ESU_R_Free 0.012 _refine.overall_SU_ML 0.033 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.021 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1071 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 142 _refine_hist.number_atoms_total 1224 _refine_hist.d_res_high 1.45 _refine_hist.d_res_low 36.92 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.016 0.022 ? 1149 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.001 0.020 ? 782 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.450 1.945 ? 1551 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.886 3.000 ? 1913 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.250 5.000 ? 142 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 33.656 24.510 ? 51 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 13.936 15.000 ? 217 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 12.726 15.000 ? 5 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.096 0.200 ? 162 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.007 0.020 ? 1281 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.002 0.020 ? 234 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1.979 1.500 ? 695 ? 'X-RAY DIFFRACTION' r_mcbond_other 0.549 1.500 ? 281 ? 'X-RAY DIFFRACTION' r_mcangle_it 3.259 2.000 ? 1120 ? 'X-RAY DIFFRACTION' r_scbond_it 4.185 3.000 ? 454 ? 'X-RAY DIFFRACTION' r_scangle_it 6.257 4.500 ? 431 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 1.622 3.000 ? 1931 ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 12 _refine_ls_shell.d_res_high 1.450 _refine_ls_shell.d_res_low 1.514 _refine_ls_shell.number_reflns_R_work 2954 _refine_ls_shell.R_factor_R_work 0.165 _refine_ls_shell.percent_reflns_obs 95.84 _refine_ls_shell.R_factor_R_free 0.232 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 130 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 3084 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4EVU _struct.title 'Crystal structure of C-terminal domain of putative periplasmic protein ydgH from S. enterica' _struct.pdbx_descriptor 'Putative periplasmic protein ydgH' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4EVU _struct_keywords.pdbx_keywords 'Structural Genomics, Unknown Function' _struct_keywords.text ;Structural Genomics, PSI-Biology, Program for the Characterization of Secreted Effector Proteins, PCSEP, Midwest Center for Structural Genomics, MCSG, secreted effector, Unknown Function ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 10 ? ALA A 15 ? ASN A 252 ALA A 257 1 ? 6 HELX_P HELX_P2 2 ASN A 31 ? LYS A 46 ? ASN A 273 LYS A 288 1 ? 16 HELX_P HELX_P3 3 ASN B 10 ? MSE B 16 ? ASN B 252 MSE B 258 1 ? 7 HELX_P HELX_P4 4 ASN B 31 ? LYS B 46 ? ASN B 273 LYS B 288 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 15 C ? ? ? 1_555 A MSE 16 N ? ? A ALA 257 A MSE 258 1_555 ? ? ? ? ? ? ? 1.340 ? covale2 covale ? ? A MSE 16 C ? ? ? 1_555 A MSE 17 N ? ? A MSE 258 A MSE 259 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale ? ? A MSE 17 C ? ? ? 1_555 A VAL 18 N ? ? A MSE 259 A VAL 260 1_555 ? ? ? ? ? ? ? 1.325 ? covale4 covale ? ? A ASN 31 C ? ? ? 1_555 A MSE 32 N A ? A ASN 273 A MSE 274 1_555 ? ? ? ? ? ? ? 1.332 ? covale5 covale ? ? A ASN 31 C ? ? ? 1_555 A MSE 32 N B ? A ASN 273 A MSE 274 1_555 ? ? ? ? ? ? ? 1.333 ? covale6 covale ? ? A MSE 32 C A ? ? 1_555 A THR 33 N ? ? A MSE 274 A THR 275 1_555 ? ? ? ? ? ? ? 1.327 ? covale7 covale ? ? A MSE 32 C B ? ? 1_555 A THR 33 N ? ? A MSE 274 A THR 275 1_555 ? ? ? ? ? ? ? 1.331 ? covale8 covale ? ? B ALA 15 C ? ? ? 1_555 B MSE 16 N ? ? B ALA 257 B MSE 258 1_555 ? ? ? ? ? ? ? 1.334 ? covale9 covale ? ? B MSE 16 C ? ? ? 1_555 B MSE 17 N ? ? B MSE 258 B MSE 259 1_555 ? ? ? ? ? ? ? 1.320 ? covale10 covale ? ? B MSE 17 C ? ? ? 1_555 B VAL 18 N ? ? B MSE 259 B VAL 260 1_555 ? ? ? ? ? ? ? 1.326 ? covale11 covale ? ? B ASN 31 C ? ? ? 1_555 B MSE 32 N A ? B ASN 273 B MSE 274 1_555 ? ? ? ? ? ? ? 1.331 ? covale12 covale ? ? B ASN 31 C ? ? ? 1_555 B MSE 32 N B ? B ASN 273 B MSE 274 1_555 ? ? ? ? ? ? ? 1.327 ? covale13 covale ? ? B MSE 32 C A ? ? 1_555 B THR 33 N ? ? B MSE 274 B THR 275 1_555 ? ? ? ? ? ? ? 1.337 ? covale14 covale ? ? B MSE 32 C B ? ? 1_555 B THR 33 N ? ? B MSE 274 B THR 275 1_555 ? ? ? ? ? ? ? 1.335 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 7 ? GLU A 8 ? GLU A 249 GLU A 250 A 2 TYR A 50 ? TRP A 57 ? TYR A 292 TRP A 299 A 3 ILE A 64 ? TYR A 71 ? ILE A 306 TYR A 313 A 4 ASP A 21 ? GLY A 27 ? ASP A 263 GLY A 269 B 1 GLU B 7 ? GLU B 8 ? GLU B 249 GLU B 250 B 2 TYR B 50 ? TRP B 57 ? TYR B 292 TRP B 299 B 3 ASN B 63 ? TYR B 71 ? ASN B 305 TYR B 313 B 4 ASP B 21 ? ASN B 28 ? ASP B 263 ASN B 270 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 7 ? N GLU A 249 O TYR A 51 ? O TYR A 293 A 2 3 N THR A 54 ? N THR A 296 O SER A 67 ? O SER A 309 A 3 4 O ILE A 66 ? O ILE A 308 N PHE A 25 ? N PHE A 267 B 1 2 N GLU B 7 ? N GLU B 249 O TYR B 51 ? O TYR B 293 B 2 3 N HIS B 52 ? N HIS B 294 O ASP B 69 ? O ASP B 311 B 3 4 O LEU B 70 ? O LEU B 312 N ASP B 21 ? N ASP B 263 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE SO4 A 401' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL B 401' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 B 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ARG A 55 ? ARG A 297 . ? 1_555 ? 2 AC1 2 HOH F . ? HOH A 524 . ? 1_555 ? 3 AC2 4 ASN B 10 ? ASN B 252 . ? 1_555 ? 4 AC2 4 LYS B 11 ? LYS B 253 . ? 1_555 ? 5 AC2 4 ALA B 12 ? ALA B 254 . ? 1_555 ? 6 AC2 4 HOH G . ? HOH B 547 . ? 1_555 ? 7 AC3 4 ARG B 60 ? ARG B 302 . ? 1_555 ? 8 AC3 4 ASN B 62 ? ASN B 304 . ? 1_555 ? 9 AC3 4 ASN B 63 ? ASN B 305 . ? 1_555 ? 10 AC3 4 HOH G . ? HOH B 542 . ? 1_555 ? # _database_PDB_matrix.entry_id 4EVU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4EVU _atom_sites.fract_transf_matrix[1][1] 0.025589 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.009002 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019040 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027085 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 183 ? ? ? A . n A 1 2 ASP 2 244 ? ? ? A . n A 1 3 GLY 3 245 ? ? ? A . n A 1 4 THR 4 246 ? ? ? A . n A 1 5 LYS 5 247 247 LYS LYS A . n A 1 6 VAL 6 248 248 VAL VAL A . n A 1 7 GLU 7 249 249 GLU GLU A . n A 1 8 GLU 8 250 250 GLU GLU A . n A 1 9 LEU 9 251 251 LEU LEU A . n A 1 10 ASN 10 252 252 ASN ASN A . n A 1 11 LYS 11 253 253 LYS LYS A . n A 1 12 ALA 12 254 254 ALA ALA A . n A 1 13 THR 13 255 255 THR THR A . n A 1 14 ALA 14 256 256 ALA ALA A . n A 1 15 ALA 15 257 257 ALA ALA A . n A 1 16 MSE 16 258 258 MSE MSE A . n A 1 17 MSE 17 259 259 MSE MSE A . n A 1 18 VAL 18 260 260 VAL VAL A . n A 1 19 PRO 19 261 261 PRO PRO A . n A 1 20 PHE 20 262 262 PHE PHE A . n A 1 21 ASP 21 263 263 ASP ASP A . n A 1 22 SER 22 264 264 SER SER A . n A 1 23 VAL 23 265 265 VAL VAL A . n A 1 24 LYS 24 266 266 LYS LYS A . n A 1 25 PHE 25 267 267 PHE PHE A . n A 1 26 THR 26 268 268 THR THR A . n A 1 27 GLY 27 269 269 GLY GLY A . n A 1 28 ASN 28 270 270 ASN ASN A . n A 1 29 TYR 29 271 271 TYR TYR A . n A 1 30 GLY 30 272 272 GLY GLY A . n A 1 31 ASN 31 273 273 ASN ASN A . n A 1 32 MSE 32 274 274 MSE MSE A . n A 1 33 THR 33 275 275 THR THR A . n A 1 34 GLU 34 276 276 GLU GLU A . n A 1 35 ILE 35 277 277 ILE ILE A . n A 1 36 SER 36 278 278 SER SER A . n A 1 37 TYR 37 279 279 TYR TYR A . n A 1 38 GLN 38 280 280 GLN GLN A . n A 1 39 VAL 39 281 281 VAL VAL A . n A 1 40 ALA 40 282 282 ALA ALA A . n A 1 41 LYS 41 283 283 LYS LYS A . n A 1 42 ARG 42 284 284 ARG ARG A . n A 1 43 ALA 43 285 285 ALA ALA A . n A 1 44 ALA 44 286 286 ALA ALA A . n A 1 45 LYS 45 287 287 LYS LYS A . n A 1 46 LYS 46 288 288 LYS LYS A . n A 1 47 GLY 47 289 289 GLY GLY A . n A 1 48 ALA 48 290 290 ALA ALA A . n A 1 49 LYS 49 291 291 LYS LYS A . n A 1 50 TYR 50 292 292 TYR TYR A . n A 1 51 TYR 51 293 293 TYR TYR A . n A 1 52 HIS 52 294 294 HIS HIS A . n A 1 53 ILE 53 295 295 ILE ILE A . n A 1 54 THR 54 296 296 THR THR A . n A 1 55 ARG 55 297 297 ARG ARG A . n A 1 56 GLN 56 298 298 GLN GLN A . n A 1 57 TRP 57 299 299 TRP TRP A . n A 1 58 GLN 58 300 300 GLN GLN A . n A 1 59 GLU 59 301 301 GLU GLU A . n A 1 60 ARG 60 302 ? ? ? A . n A 1 61 GLY 61 303 ? ? ? A . n A 1 62 ASN 62 304 ? ? ? A . n A 1 63 ASN 63 305 305 ASN ASN A . n A 1 64 ILE 64 306 306 ILE ILE A . n A 1 65 THR 65 307 307 THR THR A . n A 1 66 ILE 66 308 308 ILE ILE A . n A 1 67 SER 67 309 309 SER SER A . n A 1 68 ALA 68 310 310 ALA ALA A . n A 1 69 ASP 69 311 311 ASP ASP A . n A 1 70 LEU 70 312 312 LEU LEU A . n A 1 71 TYR 71 313 313 TYR TYR A . n A 1 72 LYS 72 314 314 LYS LYS A . n B 1 1 GLY 1 183 ? ? ? B . n B 1 2 ASP 2 244 ? ? ? B . n B 1 3 GLY 3 245 ? ? ? B . n B 1 4 THR 4 246 ? ? ? B . n B 1 5 LYS 5 247 247 LYS LYS B . n B 1 6 VAL 6 248 248 VAL VAL B . n B 1 7 GLU 7 249 249 GLU GLU B . n B 1 8 GLU 8 250 250 GLU GLU B . n B 1 9 LEU 9 251 251 LEU LEU B . n B 1 10 ASN 10 252 252 ASN ASN B . n B 1 11 LYS 11 253 253 LYS LYS B . n B 1 12 ALA 12 254 254 ALA ALA B . n B 1 13 THR 13 255 255 THR THR B . n B 1 14 ALA 14 256 256 ALA ALA B . n B 1 15 ALA 15 257 257 ALA ALA B . n B 1 16 MSE 16 258 258 MSE MSE B . n B 1 17 MSE 17 259 259 MSE MSE B . n B 1 18 VAL 18 260 260 VAL VAL B . n B 1 19 PRO 19 261 261 PRO PRO B . n B 1 20 PHE 20 262 262 PHE PHE B . n B 1 21 ASP 21 263 263 ASP ASP B . n B 1 22 SER 22 264 264 SER SER B . n B 1 23 VAL 23 265 265 VAL VAL B . n B 1 24 LYS 24 266 266 LYS LYS B . n B 1 25 PHE 25 267 267 PHE PHE B . n B 1 26 THR 26 268 268 THR THR B . n B 1 27 GLY 27 269 269 GLY GLY B . n B 1 28 ASN 28 270 270 ASN ASN B . n B 1 29 TYR 29 271 271 TYR TYR B . n B 1 30 GLY 30 272 272 GLY GLY B . n B 1 31 ASN 31 273 273 ASN ASN B . n B 1 32 MSE 32 274 274 MSE MSE B . n B 1 33 THR 33 275 275 THR THR B . n B 1 34 GLU 34 276 276 GLU GLU B . n B 1 35 ILE 35 277 277 ILE ILE B . n B 1 36 SER 36 278 278 SER SER B . n B 1 37 TYR 37 279 279 TYR TYR B . n B 1 38 GLN 38 280 280 GLN GLN B . n B 1 39 VAL 39 281 281 VAL VAL B . n B 1 40 ALA 40 282 282 ALA ALA B . n B 1 41 LYS 41 283 283 LYS LYS B . n B 1 42 ARG 42 284 284 ARG ARG B . n B 1 43 ALA 43 285 285 ALA ALA B . n B 1 44 ALA 44 286 286 ALA ALA B . n B 1 45 LYS 45 287 287 LYS LYS B . n B 1 46 LYS 46 288 288 LYS LYS B . n B 1 47 GLY 47 289 289 GLY GLY B . n B 1 48 ALA 48 290 290 ALA ALA B . n B 1 49 LYS 49 291 291 LYS LYS B . n B 1 50 TYR 50 292 292 TYR TYR B . n B 1 51 TYR 51 293 293 TYR TYR B . n B 1 52 HIS 52 294 294 HIS HIS B . n B 1 53 ILE 53 295 295 ILE ILE B . n B 1 54 THR 54 296 296 THR THR B . n B 1 55 ARG 55 297 297 ARG ARG B . n B 1 56 GLN 56 298 298 GLN GLN B . n B 1 57 TRP 57 299 299 TRP TRP B . n B 1 58 GLN 58 300 300 GLN GLN B . n B 1 59 GLU 59 301 301 GLU GLU B . n B 1 60 ARG 60 302 302 ARG ARG B . n B 1 61 GLY 61 303 303 GLY GLY B . n B 1 62 ASN 62 304 304 ASN ASN B . n B 1 63 ASN 63 305 305 ASN ASN B . n B 1 64 ILE 64 306 306 ILE ILE B . n B 1 65 THR 65 307 307 THR THR B . n B 1 66 ILE 66 308 308 ILE ILE B . n B 1 67 SER 67 309 309 SER SER B . n B 1 68 ALA 68 310 310 ALA ALA B . n B 1 69 ASP 69 311 311 ASP ASP B . n B 1 70 LEU 70 312 312 LEU LEU B . n B 1 71 TYR 71 313 313 TYR TYR B . n B 1 72 LYS 72 314 314 LYS LYS B . n # loop_ _pdbx_SG_project.id _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.initial_of_center 1 PSI:Biology 'Program for the Characterization of Secreted Effector Proteins' PCSEP 2 PSI:Biology 'Midwest Center for Structural Genomics' MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 16 A MSE 258 ? MET SELENOMETHIONINE 2 A MSE 17 A MSE 259 ? MET SELENOMETHIONINE 3 A MSE 32 A MSE 274 ? MET SELENOMETHIONINE 4 B MSE 16 B MSE 258 ? MET SELENOMETHIONINE 5 B MSE 17 B MSE 259 ? MET SELENOMETHIONINE 6 B MSE 32 B MSE 274 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G 2 1 B,D,E,G 2 2 A,C,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2200 ? 1 MORE -39 ? 1 'SSA (A^2)' 7480 ? 2 'ABSA (A^2)' 1460 ? 2 MORE -33 ? 2 'SSA (A^2)' 8220 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_657 -x+1,y+1/2,-z+2 -1.0000000000 0.0000000000 0.0000000000 13.1038652845 0.0000000000 1.0000000000 0.0000000000 26.2605000000 0.0000000000 0.0000000000 -1.0000000000 73.8426547499 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-30 2 'Structure model' 1 1 2014-07-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 SHELX 'model building' . ? 2 MLPHARE phasing . ? 3 DM 'model building' . ? 4 ARP/wARP 'model building' . ? 5 Coot 'model building' . ? 6 REFMAC refinement 5.5.0109 ? 7 HKL-3000 'data reduction' . ? 8 HKL-3000 'data scaling' . ? 9 SHELX phasing . ? 10 DM phasing . ? 11 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 273 ? ? -177.53 -176.88 2 1 ASN A 273 ? ? -177.53 -178.62 3 1 ASN B 304 ? ? -129.19 -64.63 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 183 ? A GLY 1 2 1 Y 1 A ASP 244 ? A ASP 2 3 1 Y 1 A GLY 245 ? A GLY 3 4 1 Y 1 A THR 246 ? A THR 4 5 1 Y 1 A ARG 302 ? A ARG 60 6 1 Y 1 A GLY 303 ? A GLY 61 7 1 Y 1 A ASN 304 ? A ASN 62 8 1 Y 1 B GLY 183 ? B GLY 1 9 1 Y 1 B ASP 244 ? B ASP 2 10 1 Y 1 B GLY 245 ? B GLY 3 11 1 Y 1 B THR 246 ? B THR 4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'CHLORIDE ION' CL 4 water HOH # loop_ _pdbx_reflns_twin.domain_id _pdbx_reflns_twin.crystal_id _pdbx_reflns_twin.diffrn_id _pdbx_reflns_twin.type _pdbx_reflns_twin.operator _pdbx_reflns_twin.fraction 1 1 1 ? '1.000H, 1.000K, L' 0.797 2 1 1 ? '1.000L, -1.000K, 1.000H' 0.203 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 401 1 SO4 SO4 A . D 3 CL 1 401 3 CL CL B . E 2 SO4 1 402 2 SO4 SO4 B . F 4 HOH 1 501 2 HOH HOH A . F 4 HOH 2 502 4 HOH HOH A . F 4 HOH 3 503 6 HOH HOH A . F 4 HOH 4 504 7 HOH HOH A . F 4 HOH 5 505 9 HOH HOH A . F 4 HOH 6 506 11 HOH HOH A . F 4 HOH 7 507 13 HOH HOH A . F 4 HOH 8 508 14 HOH HOH A . F 4 HOH 9 509 17 HOH HOH A . F 4 HOH 10 510 18 HOH HOH A . F 4 HOH 11 511 19 HOH HOH A . F 4 HOH 12 512 22 HOH HOH A . F 4 HOH 13 513 26 HOH HOH A . F 4 HOH 14 514 27 HOH HOH A . F 4 HOH 15 515 28 HOH HOH A . F 4 HOH 16 516 29 HOH HOH A . F 4 HOH 17 517 34 HOH HOH A . F 4 HOH 18 518 36 HOH HOH A . F 4 HOH 19 519 37 HOH HOH A . F 4 HOH 20 520 38 HOH HOH A . F 4 HOH 21 521 39 HOH HOH A . F 4 HOH 22 522 42 HOH HOH A . F 4 HOH 23 523 44 HOH HOH A . F 4 HOH 24 524 45 HOH HOH A . F 4 HOH 25 525 49 HOH HOH A . F 4 HOH 26 526 51 HOH HOH A . F 4 HOH 27 527 52 HOH HOH A . F 4 HOH 28 528 56 HOH HOH A . F 4 HOH 29 529 58 HOH HOH A . F 4 HOH 30 530 62 HOH HOH A . F 4 HOH 31 531 63 HOH HOH A . F 4 HOH 32 532 64 HOH HOH A . F 4 HOH 33 533 68 HOH HOH A . F 4 HOH 34 534 70 HOH HOH A . F 4 HOH 35 535 71 HOH HOH A . F 4 HOH 36 536 72 HOH HOH A . F 4 HOH 37 537 84 HOH HOH A . F 4 HOH 38 538 86 HOH HOH A . F 4 HOH 39 539 87 HOH HOH A . F 4 HOH 40 540 88 HOH HOH A . F 4 HOH 41 541 90 HOH HOH A . F 4 HOH 42 542 91 HOH HOH A . F 4 HOH 43 543 92 HOH HOH A . F 4 HOH 44 544 93 HOH HOH A . F 4 HOH 45 545 98 HOH HOH A . F 4 HOH 46 546 100 HOH HOH A . F 4 HOH 47 547 101 HOH HOH A . F 4 HOH 48 548 103 HOH HOH A . F 4 HOH 49 549 104 HOH HOH A . F 4 HOH 50 550 105 HOH HOH A . F 4 HOH 51 551 107 HOH HOH A . F 4 HOH 52 552 112 HOH HOH A . F 4 HOH 53 553 117 HOH HOH A . F 4 HOH 54 554 119 HOH HOH A . F 4 HOH 55 555 123 HOH HOH A . F 4 HOH 56 556 124 HOH HOH A . F 4 HOH 57 557 128 HOH HOH A . F 4 HOH 58 558 133 HOH HOH A . F 4 HOH 59 559 134 HOH HOH A . F 4 HOH 60 560 135 HOH HOH A . F 4 HOH 61 561 136 HOH HOH A . F 4 HOH 62 562 139 HOH HOH A . F 4 HOH 63 563 141 HOH HOH A . F 4 HOH 64 564 142 HOH HOH A . F 4 HOH 65 565 143 HOH HOH A . G 4 HOH 1 501 1 HOH HOH B . G 4 HOH 2 502 3 HOH HOH B . G 4 HOH 3 503 5 HOH HOH B . G 4 HOH 4 504 8 HOH HOH B . G 4 HOH 5 505 10 HOH HOH B . G 4 HOH 6 506 12 HOH HOH B . G 4 HOH 7 507 15 HOH HOH B . G 4 HOH 8 508 16 HOH HOH B . G 4 HOH 9 509 20 HOH HOH B . G 4 HOH 10 510 21 HOH HOH B . G 4 HOH 11 511 23 HOH HOH B . G 4 HOH 12 512 24 HOH HOH B . G 4 HOH 13 513 25 HOH HOH B . G 4 HOH 14 514 30 HOH HOH B . G 4 HOH 15 515 31 HOH HOH B . G 4 HOH 16 516 32 HOH HOH B . G 4 HOH 17 517 33 HOH HOH B . G 4 HOH 18 518 35 HOH HOH B . G 4 HOH 19 519 40 HOH HOH B . G 4 HOH 20 520 41 HOH HOH B . G 4 HOH 21 521 43 HOH HOH B . G 4 HOH 22 522 46 HOH HOH B . G 4 HOH 23 523 47 HOH HOH B . G 4 HOH 24 524 48 HOH HOH B . G 4 HOH 25 525 50 HOH HOH B . G 4 HOH 26 526 53 HOH HOH B . G 4 HOH 27 527 54 HOH HOH B . G 4 HOH 28 528 55 HOH HOH B . G 4 HOH 29 529 57 HOH HOH B . G 4 HOH 30 530 59 HOH HOH B . G 4 HOH 31 531 60 HOH HOH B . G 4 HOH 32 532 61 HOH HOH B . G 4 HOH 33 533 65 HOH HOH B . G 4 HOH 34 534 66 HOH HOH B . G 4 HOH 35 535 67 HOH HOH B . G 4 HOH 36 536 69 HOH HOH B . G 4 HOH 37 537 73 HOH HOH B . G 4 HOH 38 538 74 HOH HOH B . G 4 HOH 39 539 75 HOH HOH B . G 4 HOH 40 540 76 HOH HOH B . G 4 HOH 41 541 77 HOH HOH B . G 4 HOH 42 542 78 HOH HOH B . G 4 HOH 43 543 79 HOH HOH B . G 4 HOH 44 544 80 HOH HOH B . G 4 HOH 45 545 81 HOH HOH B . G 4 HOH 46 546 82 HOH HOH B . G 4 HOH 47 547 83 HOH HOH B . G 4 HOH 48 548 85 HOH HOH B . G 4 HOH 49 549 89 HOH HOH B . G 4 HOH 50 550 94 HOH HOH B . G 4 HOH 51 551 95 HOH HOH B . G 4 HOH 52 552 96 HOH HOH B . G 4 HOH 53 553 97 HOH HOH B . G 4 HOH 54 554 99 HOH HOH B . G 4 HOH 55 555 102 HOH HOH B . G 4 HOH 56 556 106 HOH HOH B . G 4 HOH 57 557 108 HOH HOH B . G 4 HOH 58 558 109 HOH HOH B . G 4 HOH 59 559 110 HOH HOH B . G 4 HOH 60 560 111 HOH HOH B . G 4 HOH 61 561 113 HOH HOH B . G 4 HOH 62 562 114 HOH HOH B . G 4 HOH 63 563 115 HOH HOH B . G 4 HOH 64 564 118 HOH HOH B . G 4 HOH 65 565 120 HOH HOH B . G 4 HOH 66 566 121 HOH HOH B . G 4 HOH 67 567 122 HOH HOH B . G 4 HOH 68 568 125 HOH HOH B . G 4 HOH 69 569 127 HOH HOH B . G 4 HOH 70 570 129 HOH HOH B . G 4 HOH 71 571 130 HOH HOH B . G 4 HOH 72 572 131 HOH HOH B . G 4 HOH 73 573 132 HOH HOH B . G 4 HOH 74 574 137 HOH HOH B . G 4 HOH 75 575 138 HOH HOH B . G 4 HOH 76 576 140 HOH HOH B . G 4 HOH 77 577 144 HOH HOH B . #