HEADER HYDROLASE 30-APR-12 4EX6 TITLE CRYSTAL STRUCTURE OF THE ALNUMYCIN P PHOSPHATASE ALNB COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALNB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. CM020; SOURCE 3 ORGANISM_TAXID: 569580; SOURCE 4 STRAIN: SP. CM020; SOURCE 5 GENE: ALNB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBADDELHISB KEYWDS MODIFIED ROSSMAN FOLD, PHOSPHATASE, MAGNESIUM BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.OJA,L.NIIRANEN,T.SANDALOVA,K.D.KLIKA,J.NIEMI,P.MANTSALA, AUTHOR 2 G.SCHNEIDER,M.METSA-KETELA REVDAT 3 13-SEP-23 4EX6 1 REMARK SEQADV LINK REVDAT 2 13-FEB-13 4EX6 1 JRNL REVDAT 1 16-JAN-13 4EX6 0 JRNL AUTH T.OJA,L.NIIRANEN,T.SANDALOVA,K.D.KLIKA,J.NIEMI,P.MANTSALA, JRNL AUTH 2 G.SCHNEIDER,M.METSA-KETELA JRNL TITL STRUCTURAL BASIS FOR C-RIBOSYLATION IN THE ALNUMYCIN A JRNL TITL 2 BIOSYNTHETIC PATHWAY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 1291 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23297194 JRNL DOI 10.1073/PNAS.1207407110 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 3 NUMBER OF REFLECTIONS : 44554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.121 REMARK 3 R VALUE (WORKING SET) : 0.119 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2377 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1683 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 46.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.1260 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.1810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1555 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 373 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.044 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.043 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.973 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1660 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1113 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2282 ; 1.842 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2725 ; 1.091 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 243 ; 5.429 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ;27.001 ;21.552 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 259 ;11.273 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;11.859 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 280 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1917 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 331 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2773 ; 6.267 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 70 ;23.511 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3067 ; 8.076 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0228 22.0703 14.3426 REMARK 3 T TENSOR REMARK 3 T11: 0.0018 T22: 0.0003 REMARK 3 T33: 0.0079 T12: -0.0000 REMARK 3 T13: 0.0001 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.2163 L22: 0.0563 REMARK 3 L33: 0.0622 L12: 0.0466 REMARK 3 L13: -0.0670 L23: -0.0279 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: 0.0050 S13: -0.0042 REMARK 3 S21: -0.0020 S22: 0.0009 S23: -0.0007 REMARK 3 S31: -0.0028 S32: -0.0030 S33: 0.0040 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4EX6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072180. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46971 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 44.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 53.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.18100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2HSZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG1500, 0.1M MIB BUFFER, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.96450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.43650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.18900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.43650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.96450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.18900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 ALA A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 ARG A 0 REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 6 REMARK 465 HIS A 226 REMARK 465 PRO A 227 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 510 O HOH A 771 1.78 REMARK 500 NH1 ARG A 205 O HOH A 773 1.83 REMARK 500 OE2 GLU A 121 NH1 ARG A 125 1.85 REMARK 500 O HOH A 488 O HOH A 757 2.01 REMARK 500 O HOH A 676 O HOH A 700 2.09 REMARK 500 O HOH A 664 O HOH A 746 2.12 REMARK 500 OG SER A 49 O HOH A 543 2.15 REMARK 500 OD1 ASP A 213 O HOH A 514 2.17 REMARK 500 O HOH A 632 O HOH A 753 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 757 O HOH A 771 3645 1.89 REMARK 500 O HOH A 715 O HOH A 746 1655 1.91 REMARK 500 O HOH A 750 O HOH A 772 4455 1.96 REMARK 500 O HOH A 624 O HOH A 694 4455 2.00 REMARK 500 O HOH A 748 O HOH A 770 3545 2.00 REMARK 500 O HOH A 510 O HOH A 757 3655 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 68 CD GLU A 68 OE1 0.067 REMARK 500 ARG A 71 CZ ARG A 71 NH2 -0.087 REMARK 500 ARG A 93 CZ ARG A 93 NH2 -0.082 REMARK 500 GLU A 101 CD GLU A 101 OE1 0.116 REMARK 500 GLU A 168 CD GLU A 168 OE1 0.072 REMARK 500 GLU A 181 CD GLU A 181 OE1 -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 16 -71.36 -95.49 REMARK 500 THR A 19 -65.51 -127.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 15 OD2 REMARK 620 2 ASP A 17 O 88.4 REMARK 620 3 ASP A 175 OD1 86.5 89.8 REMARK 620 4 HOH A 409 O 96.9 97.8 171.7 REMARK 620 5 HOH A 688 O 89.0 176.9 88.2 84.3 REMARK 620 6 HOH A 739 O 173.6 85.7 90.9 86.4 96.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BO3 A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EX7 RELATED DB: PDB REMARK 900 RELATED ID: 4EX8 RELATED DB: PDB REMARK 900 RELATED ID: 4EX9 RELATED DB: PDB DBREF 4EX6 A 2 227 UNP B6SEG4 B6SEG4_9ACTO 2 227 SEQADV 4EX6 MET A -9 UNP B6SEG4 EXPRESSION TAG SEQADV 4EX6 ALA A -8 UNP B6SEG4 EXPRESSION TAG SEQADV 4EX6 HIS A -7 UNP B6SEG4 EXPRESSION TAG SEQADV 4EX6 HIS A -6 UNP B6SEG4 EXPRESSION TAG SEQADV 4EX6 HIS A -5 UNP B6SEG4 EXPRESSION TAG SEQADV 4EX6 HIS A -4 UNP B6SEG4 EXPRESSION TAG SEQADV 4EX6 HIS A -3 UNP B6SEG4 EXPRESSION TAG SEQADV 4EX6 HIS A -2 UNP B6SEG4 EXPRESSION TAG SEQADV 4EX6 HIS A -1 UNP B6SEG4 EXPRESSION TAG SEQADV 4EX6 ARG A 0 UNP B6SEG4 EXPRESSION TAG SEQADV 4EX6 SER A 1 UNP B6SEG4 EXPRESSION TAG SEQRES 1 A 237 MET ALA HIS HIS HIS HIS HIS HIS HIS ARG SER SER GLY SEQRES 2 A 237 ALA PRO ALA ALA ALA ASP ARG GLY VAL ILE LEU ASP LEU SEQRES 3 A 237 ASP GLY THR LEU ALA ASP THR PRO ALA ALA ILE ALA THR SEQRES 4 A 237 ILE THR ALA GLU VAL LEU ALA ALA MET GLY THR ALA VAL SEQRES 5 A 237 SER ARG GLY ALA ILE LEU SER THR VAL GLY ARG PRO LEU SEQRES 6 A 237 PRO ALA SER LEU ALA GLY LEU LEU GLY VAL PRO VAL GLU SEQRES 7 A 237 ASP PRO ARG VAL ALA GLU ALA THR GLU GLU TYR GLY ARG SEQRES 8 A 237 ARG PHE GLY ALA HIS VAL ARG ALA ALA GLY PRO ARG LEU SEQRES 9 A 237 LEU TYR PRO GLY VAL LEU GLU GLY LEU ASP ARG LEU SER SEQRES 10 A 237 ALA ALA GLY PHE ARG LEU ALA MET ALA THR SER LYS VAL SEQRES 11 A 237 GLU LYS ALA ALA ARG ALA ILE ALA GLU LEU THR GLY LEU SEQRES 12 A 237 ASP THR ARG LEU THR VAL ILE ALA GLY ASP ASP SER VAL SEQRES 13 A 237 GLU ARG GLY LYS PRO HIS PRO ASP MET ALA LEU HIS VAL SEQRES 14 A 237 ALA ARG GLY LEU GLY ILE PRO PRO GLU ARG CYS VAL VAL SEQRES 15 A 237 ILE GLY ASP GLY VAL PRO ASP ALA GLU MET GLY ARG ALA SEQRES 16 A 237 ALA GLY MET THR VAL ILE GLY VAL SER TYR GLY VAL SER SEQRES 17 A 237 GLY PRO ASP GLU LEU MET ARG ALA GLY ALA ASP THR VAL SEQRES 18 A 237 VAL ASP SER PHE PRO ALA ALA VAL THR ALA VAL LEU ASP SEQRES 19 A 237 GLY HIS PRO HET MG A 301 1 HET BO3 A 302 4 HETNAM MG MAGNESIUM ION HETNAM BO3 BORIC ACID FORMUL 2 MG MG 2+ FORMUL 3 BO3 B H3 O3 FORMUL 4 HOH *373(H2 O) HELIX 1 1 THR A 23 MET A 38 1 16 HELIX 2 2 SER A 43 VAL A 51 1 9 HELIX 3 3 PRO A 54 GLY A 64 1 11 HELIX 4 4 ASP A 69 GLY A 91 1 23 HELIX 5 5 PRO A 92 LEU A 95 5 4 HELIX 6 6 GLY A 98 ALA A 109 1 12 HELIX 7 7 VAL A 120 GLY A 132 1 13 HELIX 8 8 LEU A 133 ARG A 136 5 4 HELIX 9 9 PRO A 153 GLY A 164 1 12 HELIX 10 10 PRO A 166 GLU A 168 5 3 HELIX 11 11 GLY A 176 ALA A 186 1 11 HELIX 12 12 GLY A 199 ALA A 206 1 8 HELIX 13 13 SER A 214 GLY A 225 1 12 SHEET 1 A 6 VAL A 139 ALA A 141 0 SHEET 2 A 6 PHE A 111 ALA A 116 1 N MET A 115 O VAL A 139 SHEET 3 A 6 ARG A 10 LEU A 14 1 N LEU A 14 O ALA A 114 SHEET 4 A 6 CYS A 170 GLY A 174 1 O VAL A 171 N ILE A 13 SHEET 5 A 6 THR A 189 VAL A 193 1 O ILE A 191 N VAL A 172 SHEET 6 A 6 THR A 210 VAL A 212 1 O THR A 210 N GLY A 192 LINK OD2 ASP A 15 MG MG A 301 1555 1555 1.99 LINK O ASP A 17 MG MG A 301 1555 1555 2.04 LINK OD1 ASP A 175 MG MG A 301 1555 1555 2.08 LINK MG MG A 301 O HOH A 409 1555 1555 2.12 LINK MG MG A 301 O HOH A 688 1555 1555 2.07 LINK MG MG A 301 O HOH A 739 1555 1555 2.06 CISPEP 1 LYS A 150 PRO A 151 0 6.36 SITE 1 AC1 6 ASP A 15 ASP A 17 ASP A 175 HOH A 409 SITE 2 AC1 6 HOH A 688 HOH A 739 SITE 1 AC2 9 ALA A 32 ALA A 41 VAL A 42 ILE A 47 SITE 2 AC2 9 VAL A 146 GLU A 147 ARG A 148 ASP A 154 SITE 3 AC2 9 HOH A 412 CRYST1 47.929 62.378 62.873 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020864 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016031 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015905 0.00000