HEADER HYDROLASE/HYDROLASE INHIBITOR 30-APR-12 4EXH TITLE THE CRYSTAL STRUCTURE OF XMRV PROTEASE COMPLEXED WITH ACETYL-PEPSTATIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GAG-PRO-POL POLYPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 533-657; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ACETYL-PEPSTATIN; COMPND 8 CHAIN: J, M, P; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DG-75 MURINE LEUKEMIA VIRUS; SOURCE 3 ORGANISM_TAXID: 114654; SOURCE 4 STRAIN: PCDNA3.1-XMRV-VP63; SOURCE 5 GENE: GAG-POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)TONA PRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST-521; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: STREPTOMYCES; SOURCE 14 ORGANISM_COMMON: CHAINIA; SOURCE 15 ORGANISM_TAXID: 1883 KEYWDS BETA SHEET, DIMER, PROTEASE, ACETYL-PEPSTAIN, VIRUS, HYDROLASE-HYDROL KEYWDS 2 INHIBITOR COMPLEX, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.LI,A.WLODAWER REVDAT 3 15-NOV-17 4EXH 1 REMARK REVDAT 2 14-NOV-12 4EXH 1 JRNL REVDAT 1 01-AUG-12 4EXH 0 JRNL AUTH K.MATUZ,J.MOTYAN,M.LI,A.WLODAWER JRNL TITL INHIBITION OF XMRV AND HIV-1 PROTEASES BY PEPSTATIN A AND JRNL TITL 2 ACETYL-PEPSTATIN. JRNL REF FEBS J. V. 279 3276 2012 JRNL REFN ISSN 1742-464X JRNL PMID 22804908 JRNL DOI 10.1111/J.1742-4658.2012.08714.X REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 13292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 719 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 660 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1809 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.75000 REMARK 3 B22 (A**2) : -2.50000 REMARK 3 B33 (A**2) : 0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.230 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.779 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1869 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2542 ; 1.330 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 227 ; 6.863 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;27.960 ;23.284 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 284 ;14.955 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;11.166 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 287 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1370 ; 0.005 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1190 ; 0.896 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1927 ; 1.689 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 679 ; 2.405 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 617 ; 4.117 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2641 -7.6494 13.9801 REMARK 3 T TENSOR REMARK 3 T11: 0.0345 T22: 0.0226 REMARK 3 T33: 0.0454 T12: -0.0007 REMARK 3 T13: -0.0005 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.3032 L22: 1.1202 REMARK 3 L33: 1.1455 L12: 0.2456 REMARK 3 L13: -0.3559 L23: -0.0482 REMARK 3 S TENSOR REMARK 3 S11: -0.0159 S12: -0.0189 S13: -0.0206 REMARK 3 S21: -0.0564 S22: 0.0027 S23: 0.0189 REMARK 3 S31: 0.0325 S32: -0.0400 S33: 0.0132 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 122 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5516 4.8583 0.3054 REMARK 3 T TENSOR REMARK 3 T11: 0.0374 T22: 0.0305 REMARK 3 T33: 0.0342 T12: -0.0048 REMARK 3 T13: 0.0082 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.6132 L22: 1.0873 REMARK 3 L33: 0.5229 L12: -0.1082 REMARK 3 L13: -0.0656 L23: -0.3323 REMARK 3 S TENSOR REMARK 3 S11: -0.0520 S12: 0.0296 S13: -0.0300 REMARK 3 S21: -0.0680 S22: 0.0353 S23: -0.0559 REMARK 3 S31: 0.0356 S32: 0.0313 S33: 0.0167 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : J 1 J 4 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7474 6.0521 3.8594 REMARK 3 T TENSOR REMARK 3 T11: 0.0829 T22: 0.0783 REMARK 3 T33: 0.1825 T12: -0.0285 REMARK 3 T13: -0.0087 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 8.9510 L22: 7.5702 REMARK 3 L33: 38.0727 L12: -8.3186 REMARK 3 L13: 11.3011 L23: -5.6463 REMARK 3 S TENSOR REMARK 3 S11: 0.2730 S12: -0.6010 S13: 0.4188 REMARK 3 S21: -0.2171 S22: 0.6367 S23: -0.6035 REMARK 3 S31: 0.4188 S32: -0.0414 S33: -0.9096 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : M 1 M 4 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1547 2.5438 17.4069 REMARK 3 T TENSOR REMARK 3 T11: 0.0184 T22: 0.3200 REMARK 3 T33: 0.2334 T12: -0.0390 REMARK 3 T13: -0.0710 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 25.4420 L22: 12.8924 REMARK 3 L33: 3.9174 L12: 14.4623 REMARK 3 L13: 12.6849 L23: 4.7937 REMARK 3 S TENSOR REMARK 3 S11: -0.4023 S12: 1.1622 S13: 0.8176 REMARK 3 S21: 0.0029 S22: -0.3196 S23: -0.1749 REMARK 3 S31: -0.2984 S32: 0.7748 S33: 0.7219 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 1 P 6 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1190 3.8045 10.2718 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: 0.2173 REMARK 3 T33: 0.1359 T12: 0.0485 REMARK 3 T13: 0.0095 T23: 0.0453 REMARK 3 L TENSOR REMARK 3 L11: 7.8586 L22: 0.7391 REMARK 3 L33: 8.7039 L12: -1.4765 REMARK 3 L13: 4.5045 L23: -2.4743 REMARK 3 S TENSOR REMARK 3 S11: 0.4988 S12: 0.3694 S13: -0.1469 REMARK 3 S21: 0.0144 S22: 0.0974 S23: 0.1955 REMARK 3 S31: 0.0031 S32: 0.0843 S33: -0.5962 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4EXH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000072191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14051 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28400 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 28.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5M NAFORMATE, PH 5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.15700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.73400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.60500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.73400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.15700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.60500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, J, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE ACETYL-PEPSTATIN IS OLIGOPEPTIDE, A MEMBER OF INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: ACETYL-PEPSTATIN REMARK 400 CHAIN: M REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 THR A 1 REMARK 465 LEU A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 GLN A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 GLN A 8 REMARK 465 GLY A 9 REMARK 465 GLN A 10 REMARK 465 LEU A 125 REMARK 465 MET B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 THR B 1 REMARK 465 LEU B 2 REMARK 465 GLY B 3 REMARK 465 ASP B 4 REMARK 465 GLN B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 GLN B 8 REMARK 465 GLY B 9 REMARK 465 GLN B 10 REMARK 465 GLN B 123 REMARK 465 VAL B 124 REMARK 465 LEU B 125 REMARK 465 STA J 6 REMARK 465 STA M 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 N CB CG CD OE1 OE2 REMARK 470 VAL A 124 C O CB CG1 CG2 REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 STA P 4 C ALA P 5 N 0.154 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 STA P 4 CA - C - N ANGL. DEV. = 21.4 DEGREES REMARK 500 STA P 4 O - C - N ANGL. DEV. = -13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 STA P 4 ALA P 5 -128.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 STA P 4 46.78 REMARK 500 ALA P 5 -13.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT M 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SM1 RELATED DB: PDB DBREF 4EXH A 1 125 UNP Q9E7M1 Q9E7M1_9GAMR 533 657 DBREF 4EXH B 1 125 UNP Q9E7M1 Q9E7M1_9GAMR 533 657 DBREF 4EXH J 1 6 PDB 4EXH 4EXH 1 6 DBREF 4EXH M 1 6 PDB 4EXH 4EXH 1 6 DBREF 4EXH P 1 6 PDB 4EXH 4EXH 1 6 SEQADV 4EXH MET A -6 UNP Q9E7M1 INITIATING METHIONINE SEQADV 4EXH HIS A -5 UNP Q9E7M1 EXPRESSION TAG SEQADV 4EXH HIS A -4 UNP Q9E7M1 EXPRESSION TAG SEQADV 4EXH HIS A -3 UNP Q9E7M1 EXPRESSION TAG SEQADV 4EXH HIS A -2 UNP Q9E7M1 EXPRESSION TAG SEQADV 4EXH HIS A -1 UNP Q9E7M1 EXPRESSION TAG SEQADV 4EXH HIS A 0 UNP Q9E7M1 EXPRESSION TAG SEQADV 4EXH MET B -6 UNP Q9E7M1 INITIATING METHIONINE SEQADV 4EXH HIS B -5 UNP Q9E7M1 EXPRESSION TAG SEQADV 4EXH HIS B -4 UNP Q9E7M1 EXPRESSION TAG SEQADV 4EXH HIS B -3 UNP Q9E7M1 EXPRESSION TAG SEQADV 4EXH HIS B -2 UNP Q9E7M1 EXPRESSION TAG SEQADV 4EXH HIS B -1 UNP Q9E7M1 EXPRESSION TAG SEQADV 4EXH HIS B 0 UNP Q9E7M1 EXPRESSION TAG SEQRES 1 A 132 MET HIS HIS HIS HIS HIS HIS THR LEU GLY ASP GLN GLY SEQRES 2 A 132 GLY GLN GLY GLN GLU PRO PRO PRO GLU PRO ARG ILE THR SEQRES 3 A 132 LEU LYS VAL GLY GLY GLN PRO VAL THR PHE LEU VAL ASP SEQRES 4 A 132 THR GLY ALA GLN HIS SER VAL LEU THR GLN ASN PRO GLY SEQRES 5 A 132 PRO LEU SER ASP LYS SER ALA TRP VAL GLN GLY ALA THR SEQRES 6 A 132 GLY GLY LYS ARG TYR ARG TRP THR THR ASP ARG LYS VAL SEQRES 7 A 132 HIS LEU ALA THR GLY LYS VAL THR HIS SER PHE LEU HIS SEQRES 8 A 132 VAL PRO ASP CYS PRO TYR PRO LEU LEU GLY ARG ASP LEU SEQRES 9 A 132 LEU THR LYS LEU LYS ALA GLN ILE HIS PHE GLU GLY SER SEQRES 10 A 132 GLY ALA GLN VAL VAL GLY PRO MET GLY GLN PRO LEU GLN SEQRES 11 A 132 VAL LEU SEQRES 1 B 132 MET HIS HIS HIS HIS HIS HIS THR LEU GLY ASP GLN GLY SEQRES 2 B 132 GLY GLN GLY GLN GLU PRO PRO PRO GLU PRO ARG ILE THR SEQRES 3 B 132 LEU LYS VAL GLY GLY GLN PRO VAL THR PHE LEU VAL ASP SEQRES 4 B 132 THR GLY ALA GLN HIS SER VAL LEU THR GLN ASN PRO GLY SEQRES 5 B 132 PRO LEU SER ASP LYS SER ALA TRP VAL GLN GLY ALA THR SEQRES 6 B 132 GLY GLY LYS ARG TYR ARG TRP THR THR ASP ARG LYS VAL SEQRES 7 B 132 HIS LEU ALA THR GLY LYS VAL THR HIS SER PHE LEU HIS SEQRES 8 B 132 VAL PRO ASP CYS PRO TYR PRO LEU LEU GLY ARG ASP LEU SEQRES 9 B 132 LEU THR LYS LEU LYS ALA GLN ILE HIS PHE GLU GLY SER SEQRES 10 B 132 GLY ALA GLN VAL VAL GLY PRO MET GLY GLN PRO LEU GLN SEQRES 11 B 132 VAL LEU SEQRES 1 J 6 ACE VAL VAL STA ALA STA SEQRES 1 M 6 ACE VAL VAL STA ALA STA SEQRES 1 P 6 ACE VAL VAL STA ALA STA HET ACE J 1 3 HET STA J 4 11 HET ACE M 1 3 HET STA M 4 11 HET ACE P 1 3 HET STA P 4 11 HET STA P 6 11 HET FMT M 101 3 HETNAM ACE ACETYL GROUP HETNAM STA STATINE HETNAM FMT FORMIC ACID FORMUL 3 ACE 3(C2 H4 O) FORMUL 3 STA 4(C8 H17 N O3) FORMUL 6 FMT C H2 O2 FORMUL 7 HOH *47(H2 O) HELIX 1 1 GLY A 94 LYS A 102 1 9 HELIX 2 2 GLY B 94 LYS B 102 1 9 SHEET 1 A 3 ARG A 17 VAL A 22 0 SHEET 2 A 3 GLN A 25 VAL A 31 -1 O PHE A 29 N ILE A 18 SHEET 3 A 3 LEU A 92 LEU A 93 1 O LEU A 93 N LEU A 30 SHEET 1 B 4 VAL A 39 LEU A 40 0 SHEET 2 B 4 LEU A 83 HIS A 84 1 O LEU A 83 N LEU A 40 SHEET 3 B 4 GLY A 60 THR A 66 -1 N ARG A 64 O HIS A 84 SHEET 4 B 4 LEU A 47 GLN A 55 -1 N ALA A 52 O TYR A 63 SHEET 1 C 2 ARG A 69 LEU A 73 0 SHEET 2 C 2 GLY A 76 HIS A 80 -1 O VAL A 78 N VAL A 71 SHEET 1 D 5 PRO A 121 LEU A 122 0 SHEET 2 D 5 GLN A 113 VAL A 115 -1 N VAL A 114 O LEU A 122 SHEET 3 D 5 GLN A 104 HIS A 106 -1 N GLN A 104 O VAL A 115 SHEET 4 D 5 GLN B 104 GLU B 108 -1 O ILE B 105 N ILE A 105 SHEET 5 D 5 GLY B 111 VAL B 115 -1 O VAL B 115 N GLN B 104 SHEET 1 E 5 LYS B 77 HIS B 80 0 SHEET 2 E 5 ARG B 69 HIS B 72 -1 N VAL B 71 O VAL B 78 SHEET 3 E 5 ARG B 17 VAL B 22 -1 N LYS B 21 O HIS B 72 SHEET 4 E 5 GLN B 25 VAL B 31 -1 O PHE B 29 N ILE B 18 SHEET 5 E 5 LEU B 92 LEU B 93 1 O LEU B 93 N LEU B 30 SHEET 1 F 2 VAL B 39 LEU B 40 0 SHEET 2 F 2 LEU B 83 HIS B 84 1 O LEU B 83 N LEU B 40 SHEET 1 G 2 LEU B 47 GLN B 55 0 SHEET 2 G 2 GLY B 60 THR B 66 -1 O TRP B 65 N SER B 48 SHEET 1 H 2 VAL J 2 VAL J 3 0 SHEET 2 H 2 ALA P 5 STA P 6 1 O STA P 6 N VAL J 2 SHEET 1 I 2 VAL M 2 VAL M 3 0 SHEET 2 I 2 VAL P 2 VAL P 3 -1 O VAL P 3 N VAL M 2 LINK C ACE J 1 N VAL J 2 1555 1555 1.33 LINK C VAL J 3 N STA J 4 1555 1555 1.35 LINK C STA J 4 N ALA J 5 1555 1555 1.33 LINK C ACE M 1 N VAL M 2 1555 1555 1.33 LINK C VAL M 3 N STA M 4 1555 1555 1.35 LINK C STA M 4 N ALA M 5 1555 1555 1.33 LINK C ACE P 1 N VAL P 2 1555 1555 1.34 LINK C VAL P 3 N STA P 4 1555 1555 1.35 LINK C STA P 4 N ALA P 5 1555 1555 1.49 LINK C ALA P 5 N STA P 6 1555 1555 1.34 CISPEP 1 GLU A 15 PRO A 16 0 -4.08 CISPEP 2 GLU B 15 PRO B 16 0 0.42 SITE 1 AC1 3 TRP A 53 STA M 4 ALA M 5 CRYST1 46.314 65.210 69.468 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021592 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014395 0.00000