HEADER BIOSYNTHETIC PROTEIN 30-APR-12 4EXQ TITLE CRYSTAL STRUCTURE OF UROPORPHYRINOGEN DECARBOXYLASE (UPD) FROM TITLE 2 BURKHOLDERIA THAILANDENSIS E264 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UROPORPHYRINOGEN DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UPD, URO-D; COMPND 5 EC: 4.1.1.37; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 STRAIN: E264 / ATCC 700388 / DSM 13276 / CIP 106301; SOURCE 5 GENE: HEME, BTH_I3304; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, NIH, SBRI, URO-D, HEME BIOSYNTHESIS, STRUCTURAL GENOMICS, KEYWDS 2 NIAID, NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES, KEYWDS 3 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 4 BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 28-FEB-24 4EXQ 1 REMARK SEQADV REVDAT 2 30-OCT-13 4EXQ 1 JRNL REVDAT 1 16-MAY-12 4EXQ 0 JRNL AUTH L.BAUGH,L.A.GALLAGHER,R.PATRAPUVICH,M.C.CLIFTON, JRNL AUTH 2 A.S.GARDBERG,T.E.EDWARDS,B.ARMOUR,D.W.BEGLEY,S.H.DIETERICH, JRNL AUTH 3 D.M.DRANOW,J.ABENDROTH,J.W.FAIRMAN,D.FOX,B.L.STAKER,I.PHAN, JRNL AUTH 4 A.GILLESPIE,R.CHOI,S.NAKAZAWA-HEWITT,M.T.NGUYEN,A.NAPULI, JRNL AUTH 5 L.BARRETT,G.W.BUCHKO,R.STACY,P.J.MYLER,L.J.STEWART,C.MANOIL, JRNL AUTH 6 W.C.VAN VOORHIS JRNL TITL COMBINING FUNCTIONAL AND STRUCTURAL GENOMICS TO SAMPLE THE JRNL TITL 2 ESSENTIAL BURKHOLDERIA STRUCTOME. JRNL REF PLOS ONE V. 8 53851 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23382856 JRNL DOI 10.1371/JOURNAL.PONE.0053851 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 41768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2105 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2562 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2678 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.75000 REMARK 3 B22 (A**2) : 0.75000 REMARK 3 B33 (A**2) : -1.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.462 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2759 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3771 ; 1.315 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 361 ; 5.410 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;32.257 ;22.869 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 395 ;12.643 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;20.776 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 426 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2158 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0418 -29.1943 -24.1552 REMARK 3 T TENSOR REMARK 3 T11: 0.1050 T22: 0.0432 REMARK 3 T33: 0.0623 T12: 0.0066 REMARK 3 T13: 0.0011 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.4673 L22: 0.8148 REMARK 3 L33: 0.3020 L12: 0.5912 REMARK 3 L13: 0.0442 L23: 0.0049 REMARK 3 S TENSOR REMARK 3 S11: 0.0573 S12: -0.0057 S13: -0.0443 REMARK 3 S21: 0.0265 S22: -0.0237 S23: -0.0358 REMARK 3 S31: -0.0625 S32: -0.0419 S33: -0.0336 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9873 -17.2266 -24.7295 REMARK 3 T TENSOR REMARK 3 T11: 0.1604 T22: 0.0214 REMARK 3 T33: 0.0452 T12: -0.0268 REMARK 3 T13: 0.0119 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.2401 L22: 1.5124 REMARK 3 L33: 0.1683 L12: 0.3689 REMARK 3 L13: -0.0248 L23: -0.2642 REMARK 3 S TENSOR REMARK 3 S11: 0.0861 S12: -0.0052 S13: -0.0119 REMARK 3 S21: -0.0060 S22: -0.0681 S23: 0.0474 REMARK 3 S31: -0.0804 S32: 0.0539 S33: -0.0180 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9267 -9.3342 -11.1063 REMARK 3 T TENSOR REMARK 3 T11: 0.1682 T22: 0.0216 REMARK 3 T33: 0.0734 T12: -0.0161 REMARK 3 T13: -0.0245 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.0077 L22: 1.0635 REMARK 3 L33: 3.6067 L12: -0.0670 REMARK 3 L13: 0.0416 L23: 0.4181 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: 0.0041 S13: 0.0177 REMARK 3 S21: -0.0603 S22: -0.0381 S23: -0.0750 REMARK 3 S31: -0.3934 S32: 0.2223 S33: 0.0513 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 136 A 169 REMARK 3 ORIGIN FOR THE GROUP (A): 13.1961 -20.1842 -15.4754 REMARK 3 T TENSOR REMARK 3 T11: 0.1156 T22: 0.0874 REMARK 3 T33: 0.0470 T12: 0.0088 REMARK 3 T13: -0.0020 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.0753 L22: 0.5418 REMARK 3 L33: 4.1324 L12: 0.2016 REMARK 3 L13: 0.5411 L23: 1.4540 REMARK 3 S TENSOR REMARK 3 S11: -0.0386 S12: 0.0134 S13: -0.0048 REMARK 3 S21: -0.0901 S22: 0.0360 S23: -0.0188 REMARK 3 S31: -0.1948 S32: 0.2269 S33: 0.0026 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 170 A 261 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1079 -22.5442 -5.8428 REMARK 3 T TENSOR REMARK 3 T11: 0.0799 T22: 0.0689 REMARK 3 T33: 0.0456 T12: 0.0200 REMARK 3 T13: -0.0010 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.1424 L22: 0.4513 REMARK 3 L33: 1.7483 L12: -0.0457 REMARK 3 L13: 0.4865 L23: -0.3369 REMARK 3 S TENSOR REMARK 3 S11: -0.0043 S12: -0.0203 S13: 0.0066 REMARK 3 S21: 0.0101 S22: -0.0076 S23: 0.0435 REMARK 3 S31: -0.0474 S32: -0.0583 S33: 0.0120 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 262 A 358 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6013 -38.8626 -16.8072 REMARK 3 T TENSOR REMARK 3 T11: 0.0720 T22: 0.0614 REMARK 3 T33: 0.0665 T12: -0.0057 REMARK 3 T13: -0.0003 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.5371 L22: 0.2149 REMARK 3 L33: 0.2514 L12: -0.0820 REMARK 3 L13: -0.1821 L23: -0.0131 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: -0.0530 S13: -0.0414 REMARK 3 S21: -0.0016 S22: 0.0144 S23: 0.0191 REMARK 3 S31: 0.0101 S32: 0.0238 S33: -0.0178 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF REMARK 4 REMARK 4 4EXQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072200. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41883 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EBS INTERNAL TRACKING NUMBER HEPES (PH REMARK 280 7.0), 500 MM NACL, 2 MM DTT, 0.025% SODIUM AZIDE, 5% GLYCEROL, REMARK 280 0.4 UL X 0.4 UL DROP WITH 10% PEG 1000, 10% PEG 8000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.81000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 26.66000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 26.66000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.40500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 26.66000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 26.66000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 175.21500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 26.66000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.66000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.40500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 26.66000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.66000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 175.21500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 116.81000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 53.32000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -53.32000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 ALA A 93 REMARK 465 ALA A 94 REMARK 465 GLY A 95 REMARK 465 GLU A 96 REMARK 465 SER A 360 REMARK 465 GLY A 361 REMARK 465 THR A 362 REMARK 465 GLY A 363 REMARK 465 SER A 364 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 ASP A 168 CG OD1 OD2 REMARK 470 ARG A 171 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 183 CG CD1 CD2 REMARK 470 ARG A 186 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 235 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 243 CG CD OE1 OE2 REMARK 470 ARG A 283 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 333 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 359 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 77 -158.93 -159.01 REMARK 500 ASP A 169 -17.23 -145.39 REMARK 500 ASP A 214 60.45 -100.70 REMARK 500 SER A 229 -61.50 -120.51 REMARK 500 ASN A 297 37.00 -147.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EX4 RELATED DB: PDB REMARK 900 RELATED ID: SSGCID-BUTHA.01152.A RELATED DB: TARGETTRACK DBREF 4EXQ A 1 364 UNP Q2STF3 DCUP_BURTA 1 364 SEQADV 4EXQ GLY A -3 UNP Q2STF3 EXPRESSION TAG SEQADV 4EXQ PRO A -2 UNP Q2STF3 EXPRESSION TAG SEQADV 4EXQ GLY A -1 UNP Q2STF3 EXPRESSION TAG SEQADV 4EXQ SER A 0 UNP Q2STF3 EXPRESSION TAG SEQRES 1 A 368 GLY PRO GLY SER MET ALA GLN THR LEU ILE ASN ASP THR SEQRES 2 A 368 PHE LEU ARG ALA LEU LEU ARG GLU PRO THR ASP TYR THR SEQRES 3 A 368 PRO ILE TRP LEU MET ARG GLN ALA GLY ARG TYR LEU PRO SEQRES 4 A 368 GLU TYR ASN ALA THR ARG ALA ARG ALA GLY SER PHE LEU SEQRES 5 A 368 GLY LEU ALA LYS HIS PRO ASP TYR ALA THR GLU VAL THR SEQRES 6 A 368 LEU GLN PRO LEU GLU ARG PHE PRO LEU ASP ALA ALA ILE SEQRES 7 A 368 LEU PHE SER ASP ILE LEU THR ILE PRO ASP ALA MET GLY SEQRES 8 A 368 LEU GLY LEU ASP PHE ALA ALA GLY GLU GLY PRO LYS PHE SEQRES 9 A 368 ALA HIS PRO VAL ARG THR GLU ALA ASP VAL ALA LYS LEU SEQRES 10 A 368 ALA VAL PRO ASP ILE GLY ALA THR LEU GLY TYR VAL THR SEQRES 11 A 368 ASP ALA VAL ARG GLU ILE ARG ARG ALA LEU THR ASP GLY SEQRES 12 A 368 GLU GLY ARG GLN ARG VAL PRO LEU ILE GLY PHE SER GLY SEQRES 13 A 368 SER PRO TRP THR LEU ALA CYS TYR MET VAL GLU GLY GLY SEQRES 14 A 368 GLY SER ASP ASP PHE ARG THR VAL LYS SER MET ALA TYR SEQRES 15 A 368 ALA ARG PRO ASP LEU MET HIS ARG ILE LEU ASP VAL ASN SEQRES 16 A 368 ALA GLN ALA VAL ALA ALA TYR LEU ASN ALA GLN ILE GLU SEQRES 17 A 368 ALA GLY ALA GLN ALA VAL MET ILE PHE ASP THR TRP GLY SEQRES 18 A 368 GLY ALA LEU ALA ASP GLY ALA TYR GLN ARG PHE SER LEU SEQRES 19 A 368 ASP TYR ILE ARG ARG VAL VAL ALA GLN LEU LYS ARG GLU SEQRES 20 A 368 HIS ASP GLY ALA ARG VAL PRO ALA ILE ALA PHE THR LYS SEQRES 21 A 368 GLY GLY GLY LEU TRP LEU GLU ASP LEU ALA ALA THR GLY SEQRES 22 A 368 VAL ASP ALA VAL GLY LEU ASP TRP THR VAL ASN LEU GLY SEQRES 23 A 368 ARG ALA ARG GLU ARG VAL ALA GLY ARG VAL ALA LEU GLN SEQRES 24 A 368 GLY ASN LEU ASP PRO THR ILE LEU PHE ALA PRO PRO GLU SEQRES 25 A 368 ALA ILE ARG ALA GLU ALA ARG ALA VAL LEU ASP SER TYR SEQRES 26 A 368 GLY ASN HIS PRO GLY HIS VAL PHE ASN LEU GLY HIS GLY SEQRES 27 A 368 ILE SER GLN PHE THR PRO PRO GLU HIS VAL ALA GLU LEU SEQRES 28 A 368 VAL ASP GLU VAL HIS ARG HIS SER ARG ALA ILE ARG SER SEQRES 29 A 368 GLY THR GLY SER HET NA A 401 1 HETNAM NA SODIUM ION FORMUL 2 NA NA 1+ FORMUL 3 HOH *174(H2 O) HELIX 1 1 ASP A 8 LEU A 15 1 8 HELIX 2 2 LEU A 34 GLY A 45 1 12 HELIX 3 3 SER A 46 HIS A 53 1 8 HELIX 4 4 HIS A 53 PHE A 68 1 16 HELIX 5 5 LEU A 80 MET A 86 1 7 HELIX 6 6 THR A 106 LYS A 112 1 7 HELIX 7 7 ASP A 117 LEU A 122 1 6 HELIX 8 8 LEU A 122 LEU A 136 1 15 HELIX 9 9 SER A 153 GLY A 164 1 12 HELIX 10 10 PHE A 170 ARG A 180 1 11 HELIX 11 11 ARG A 180 GLY A 206 1 27 HELIX 12 12 TRP A 216 LEU A 220 5 5 HELIX 13 13 GLY A 223 SER A 229 1 7 HELIX 14 14 SER A 229 GLN A 239 1 11 HELIX 15 15 GLY A 258 LEU A 260 5 3 HELIX 16 16 TRP A 261 ALA A 267 1 7 HELIX 17 17 ASN A 280 ALA A 289 1 10 HELIX 18 18 ASP A 299 ALA A 305 5 7 HELIX 19 19 PRO A 306 GLY A 322 1 17 HELIX 20 20 PRO A 340 ARG A 359 1 20 SHEET 1 A 7 ALA A 73 ILE A 74 0 SHEET 2 A 7 LEU A 147 GLY A 152 1 O ILE A 148 N ALA A 73 SHEET 3 A 7 ALA A 209 ASP A 214 1 O ALA A 209 N GLY A 149 SHEET 4 A 7 ALA A 251 THR A 255 1 O PHE A 254 N ASP A 214 SHEET 5 A 7 ALA A 272 GLY A 274 1 O GLY A 274 N ALA A 253 SHEET 6 A 7 ALA A 293 LEU A 298 1 O GLN A 295 N VAL A 273 SHEET 7 A 7 HIS A 327 LEU A 331 1 O VAL A 328 N LEU A 294 SHEET 1 B 2 LEU A 90 ASP A 91 0 SHEET 2 B 2 LYS A 99 PHE A 100 -1 O LYS A 99 N ASP A 91 SHEET 1 C 2 GLU A 243 HIS A 244 0 SHEET 2 C 2 ALA A 247 ARG A 248 -1 O ALA A 247 N HIS A 244 LINK OG1 THR A 9 NA NA A 401 1555 1555 3.04 CISPEP 1 GLY A 296 ASN A 297 0 4.71 SITE 1 AC1 4 THR A 9 THR A 19 ASP A 20 PRO A 307 CRYST1 53.320 53.320 233.620 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018755 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018755 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004280 0.00000