data_4EXR # _entry.id 4EXR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4EXR pdb_00004exr 10.2210/pdb4exr/pdb RCSB RCSB072201 ? ? WWPDB D_1000072201 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-418336 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4EXR _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-04-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category CASP _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a putative lipoprotein (CD1622) from Clostridium difficile 630 at 1.85 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4EXR _cell.length_a 77.631 _cell.length_b 77.631 _cell.length_c 84.855 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4EXR _symmetry.Int_Tables_number 95 _symmetry.space_group_name_H-M 'P 43 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative lipoprotein' 20366.051 1 ? ? 'UNP residues 33-205' ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 4 water nat water 18.015 104 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GQDNTKKEANASNNALKDEKNNENL(MSE)EQDFKVPYTDAINIFKDKYKDADIVDLSLERDLNKFVYTVEGVDDNNEYK (MSE)KIDANTKDVLEDKTEKLDSEDLNGVARKEKLDLNDI(MSE)TPQQA(MSE)EIALKEQNGIVKEWSLDKDLDVTF YKIRIDKDKNEYDIKVDSKKGTVLKVEKED ; _entity_poly.pdbx_seq_one_letter_code_can ;GQDNTKKEANASNNALKDEKNNENLMEQDFKVPYTDAINIFKDKYKDADIVDLSLERDLNKFVYTVEGVDDNNEYKMKID ANTKDVLEDKTEKLDSEDLNGVARKEKLDLNDIMTPQQAMEIALKEQNGIVKEWSLDKDLDVTFYKIRIDKDKNEYDIKV DSKKGTVLKVEKED ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-418336 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 ASP n 1 4 ASN n 1 5 THR n 1 6 LYS n 1 7 LYS n 1 8 GLU n 1 9 ALA n 1 10 ASN n 1 11 ALA n 1 12 SER n 1 13 ASN n 1 14 ASN n 1 15 ALA n 1 16 LEU n 1 17 LYS n 1 18 ASP n 1 19 GLU n 1 20 LYS n 1 21 ASN n 1 22 ASN n 1 23 GLU n 1 24 ASN n 1 25 LEU n 1 26 MSE n 1 27 GLU n 1 28 GLN n 1 29 ASP n 1 30 PHE n 1 31 LYS n 1 32 VAL n 1 33 PRO n 1 34 TYR n 1 35 THR n 1 36 ASP n 1 37 ALA n 1 38 ILE n 1 39 ASN n 1 40 ILE n 1 41 PHE n 1 42 LYS n 1 43 ASP n 1 44 LYS n 1 45 TYR n 1 46 LYS n 1 47 ASP n 1 48 ALA n 1 49 ASP n 1 50 ILE n 1 51 VAL n 1 52 ASP n 1 53 LEU n 1 54 SER n 1 55 LEU n 1 56 GLU n 1 57 ARG n 1 58 ASP n 1 59 LEU n 1 60 ASN n 1 61 LYS n 1 62 PHE n 1 63 VAL n 1 64 TYR n 1 65 THR n 1 66 VAL n 1 67 GLU n 1 68 GLY n 1 69 VAL n 1 70 ASP n 1 71 ASP n 1 72 ASN n 1 73 ASN n 1 74 GLU n 1 75 TYR n 1 76 LYS n 1 77 MSE n 1 78 LYS n 1 79 ILE n 1 80 ASP n 1 81 ALA n 1 82 ASN n 1 83 THR n 1 84 LYS n 1 85 ASP n 1 86 VAL n 1 87 LEU n 1 88 GLU n 1 89 ASP n 1 90 LYS n 1 91 THR n 1 92 GLU n 1 93 LYS n 1 94 LEU n 1 95 ASP n 1 96 SER n 1 97 GLU n 1 98 ASP n 1 99 LEU n 1 100 ASN n 1 101 GLY n 1 102 VAL n 1 103 ALA n 1 104 ARG n 1 105 LYS n 1 106 GLU n 1 107 LYS n 1 108 LEU n 1 109 ASP n 1 110 LEU n 1 111 ASN n 1 112 ASP n 1 113 ILE n 1 114 MSE n 1 115 THR n 1 116 PRO n 1 117 GLN n 1 118 GLN n 1 119 ALA n 1 120 MSE n 1 121 GLU n 1 122 ILE n 1 123 ALA n 1 124 LEU n 1 125 LYS n 1 126 GLU n 1 127 GLN n 1 128 ASN n 1 129 GLY n 1 130 ILE n 1 131 VAL n 1 132 LYS n 1 133 GLU n 1 134 TRP n 1 135 SER n 1 136 LEU n 1 137 ASP n 1 138 LYS n 1 139 ASP n 1 140 LEU n 1 141 ASP n 1 142 VAL n 1 143 THR n 1 144 PHE n 1 145 TYR n 1 146 LYS n 1 147 ILE n 1 148 ARG n 1 149 ILE n 1 150 ASP n 1 151 LYS n 1 152 ASP n 1 153 LYS n 1 154 ASN n 1 155 GLU n 1 156 TYR n 1 157 ASP n 1 158 ILE n 1 159 LYS n 1 160 VAL n 1 161 ASP n 1 162 SER n 1 163 LYS n 1 164 LYS n 1 165 GLY n 1 166 THR n 1 167 VAL n 1 168 LEU n 1 169 LYS n 1 170 VAL n 1 171 GLU n 1 172 LYS n 1 173 GLU n 1 174 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CD630_16220 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 630 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Clostridium difficile' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272563 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q186H8_CLOD6 _struct_ref.pdbx_db_accession Q186H8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QDNTKKEANASNNALKDEKNNENLMEQDFKVPYTDAINIFKDKYKDADIVDLSLERDLNKFVYTVEGVDDNNEYKMKIDA NTKDVLEDKTEKLDSEDLNGVARKEKLDLNDIMTPQQAMEIALKEQNGIVKEWSLDKDLDVTFYKIRIDKDKNEYDIKVD SKKGTVLKVEKED ; _struct_ref.pdbx_align_begin 33 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4EXR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 174 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q186H8 _struct_ref_seq.db_align_beg 33 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 205 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 33 _struct_ref_seq.pdbx_auth_seq_align_end 205 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4EXR _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q186H8 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4EXR # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.14 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 60.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;0.20M sodium chloride, 40.00% polyethylene glycol 400, 0.1M Na/K phosphate pH 6.2, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.pdbx_collection_date 2012-04-05 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97903 1.0 2 0.91837 1.0 3 0.97845 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.97903,0.91837,0.97845 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4EXR _reflns.d_resolution_high 1.85 _reflns.d_resolution_low 28.639 _reflns.number_all 22697 _reflns.number_obs 22697 _reflns.pdbx_netI_over_sigmaI 8.700 _reflns.pdbx_Rsym_value 0.093 _reflns.pdbx_redundancy 5.800 _reflns.percent_possible_obs 99.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.850 1.900 ? 8643 ? 0.817 0.9 0.817 ? 5.300 ? 1626 100.000 1 1 1.900 1.950 ? 9024 ? 0.590 1.2 0.590 ? 5.600 ? 1624 99.900 2 1 1.950 2.010 ? 9656 ? 0.459 1.6 0.459 ? 6.300 ? 1541 100.000 3 1 2.010 2.070 ? 9437 ? 0.379 1.9 0.379 ? 6.200 ? 1531 100.000 4 1 2.070 2.140 ? 8741 ? 0.336 2.2 0.336 ? 5.900 ? 1475 99.900 5 1 2.140 2.210 ? 8322 ? 0.268 2.8 0.268 ? 5.800 ? 1436 99.800 6 1 2.210 2.290 ? 7237 ? 0.228 3.1 0.228 ? 5.200 ? 1381 99.600 7 1 2.290 2.390 ? 7636 ? 0.204 3.6 0.204 ? 5.800 ? 1325 99.900 8 1 2.390 2.490 ? 8022 ? 0.166 4.4 0.166 ? 6.200 ? 1290 100.000 9 1 2.490 2.620 ? 7558 ? 0.135 5.2 0.135 ? 6.100 ? 1230 99.800 10 1 2.620 2.760 ? 7094 ? 0.120 5.6 0.120 ? 6.000 ? 1173 100.000 11 1 2.760 2.930 ? 6280 ? 0.098 6.6 0.098 ? 5.700 ? 1108 99.800 12 1 2.930 3.130 ? 5815 ? 0.086 7.3 0.086 ? 5.600 ? 1041 99.500 13 1 3.130 3.380 ? 6300 ? 0.081 7.8 0.081 ? 6.300 ? 997 99.900 14 1 3.380 3.700 ? 5490 ? 0.071 8.9 0.071 ? 6.100 ? 904 99.500 15 1 3.700 4.140 ? 4759 ? 0.062 10.6 0.062 ? 5.700 ? 829 100.000 16 1 4.140 4.780 ? 3834 ? 0.056 10.7 0.056 ? 5.200 ? 732 98.200 17 1 4.780 5.850 ? 3856 ? 0.059 10.9 0.059 ? 6.000 ? 639 100.000 18 1 5.850 8.270 ? 2646 ? 0.060 11.1 0.060 ? 5.200 ? 511 99.000 19 1 8.270 28.639 ? 1618 ? 0.052 12.2 0.052 ? 5.300 ? 304 95.600 20 1 # _refine.entry_id 4EXR _refine.ls_d_res_high 1.8500 _refine.ls_d_res_low 28.639 _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.3500 _refine.ls_number_reflns_obs 22606 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 4.A SODIUM ION AND PHOSPHATE MOLECULE FROM THE PURIFICATION/CRYSTALLIZATION SOLUTIONS HAVE BEEN MODELED INTO THE STRUCTURE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1856 _refine.ls_R_factor_R_work 0.1844 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2100 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0900 _refine.ls_number_reflns_R_free 1151 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 41.9168 _refine.solvent_model_param_bsol 44.5910 _refine.solvent_model_param_ksol 0.3640 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 6.6748 _refine.aniso_B[2][2] 6.6748 _refine.aniso_B[3][3] -13.3495 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2100 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.8600 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 108.600 _refine.B_iso_min 19.060 _refine.pdbx_overall_phase_error 20.7800 _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1224 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 104 _refine_hist.number_atoms_total 1334 _refine_hist.d_res_high 1.8500 _refine_hist.d_res_low 28.639 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1304 0.008 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1767 1.064 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 197 0.077 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 231 0.004 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 515 13.070 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.8500 1.9342 8 99.0000 2591 . 0.2939 0.3140 . 143 . 2734 . . 'X-RAY DIFFRACTION' 1.9342 2.0362 8 99.0000 2622 . 0.2244 0.2356 . 149 . 2771 . . 'X-RAY DIFFRACTION' 2.0362 2.1637 8 100.0000 2664 . 0.2024 0.2103 . 132 . 2796 . . 'X-RAY DIFFRACTION' 2.1637 2.3307 8 99.0000 2620 . 0.1910 0.2220 . 158 . 2778 . . 'X-RAY DIFFRACTION' 2.3307 2.5651 8 100.0000 2654 . 0.1882 0.2019 . 162 . 2816 . . 'X-RAY DIFFRACTION' 2.5651 2.9360 8 100.0000 2697 . 0.1890 0.2181 . 135 . 2832 . . 'X-RAY DIFFRACTION' 2.9360 3.6977 8 99.0000 2741 . 0.1734 0.2105 . 133 . 2874 . . 'X-RAY DIFFRACTION' 3.6977 28.6420 8 99.0000 2866 . 0.1672 0.1896 . 139 . 3005 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4EXR _struct.title 'Crystal structure of a putative lipoprotein (CD1622) from Clostridium difficile 630 at 1.85 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.text ;YPEB domain dimer, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 4EXR # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 24 ? GLN A 28 ? ASN A 55 GLN A 59 5 ? 5 HELX_P HELX_P2 2 PRO A 33 ? TYR A 45 ? PRO A 64 TYR A 76 1 ? 13 HELX_P HELX_P3 3 ASP A 95 ? LEU A 99 ? ASP A 126 LEU A 130 5 ? 5 HELX_P HELX_P4 4 VAL A 102 ? LYS A 107 ? VAL A 133 LYS A 138 5 ? 6 HELX_P HELX_P5 5 THR A 115 ? GLN A 127 ? THR A 146 GLN A 158 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 25 C ? ? ? 1_555 A MSE 26 N ? ? A LEU 56 A MSE 57 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A MSE 26 C ? ? ? 1_555 A GLU 27 N ? ? A MSE 57 A GLU 58 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? A LYS 76 C ? ? ? 1_555 A MSE 77 N ? ? A LYS 107 A MSE 108 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? A MSE 77 C ? ? ? 1_555 A LYS 78 N ? ? A MSE 108 A LYS 109 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale5 covale both ? A ILE 113 C ? ? ? 1_555 A MSE 114 N ? ? A ILE 144 A MSE 145 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale6 covale both ? A MSE 114 C ? ? ? 1_555 A THR 115 N ? ? A MSE 145 A THR 146 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale7 covale both ? A ALA 119 C ? ? ? 1_555 A MSE 120 N ? ? A ALA 150 A MSE 151 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale8 covale both ? A MSE 120 C ? ? ? 1_555 A GLU 121 N ? ? A MSE 151 A GLU 152 1_555 ? ? ? ? ? ? ? 1.331 ? ? metalc1 metalc ? ? A VAL 51 O ? ? ? 1_555 B NA . NA ? ? A VAL 82 A NA 301 1_555 ? ? ? ? ? ? ? 2.364 ? ? metalc2 metalc ? ? A ASP 52 OD1 ? ? ? 1_555 B NA . NA ? ? A ASP 83 A NA 301 1_555 ? ? ? ? ? ? ? 2.352 ? ? metalc3 metalc ? ? A ASP 137 OD1 ? ? ? 1_555 B NA . NA ? ? A ASP 168 A NA 301 1_555 ? ? ? ? ? ? ? 2.334 ? ? metalc4 metalc ? ? B NA . NA ? ? ? 1_555 D HOH . O ? ? A NA 301 A HOH 406 1_555 ? ? ? ? ? ? ? 2.346 ? ? metalc5 metalc ? ? B NA . NA ? ? ? 1_555 D HOH . O ? ? A NA 301 A HOH 502 1_555 ? ? ? ? ? ? ? 2.367 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 86 ? LYS A 93 ? VAL A 117 LYS A 124 A 2 ASN A 73 ? ASP A 80 ? ASN A 104 ASP A 111 A 3 LYS A 61 ? VAL A 69 ? LYS A 92 VAL A 100 A 4 ASP A 49 ? ASP A 58 ? ASP A 80 ASP A 89 A 5 ILE A 130 ? ASP A 139 ? ILE A 161 ASP A 170 A 6 VAL A 142 ? LYS A 151 ? VAL A 173 LYS A 182 A 7 ASN A 154 ? ASP A 161 ? ASN A 185 ASP A 192 A 8 VAL A 167 ? LYS A 172 ? VAL A 198 LYS A 203 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 90 ? O LYS A 121 N LYS A 76 ? N LYS A 107 A 2 3 O TYR A 75 ? O TYR A 106 N GLY A 68 ? N GLY A 99 A 3 4 O LYS A 61 ? O LYS A 92 N ASP A 58 ? N ASP A 89 A 4 5 N LEU A 53 ? N LEU A 84 O LEU A 136 ? O LEU A 167 A 5 6 N SER A 135 ? N SER A 166 O LYS A 146 ? O LYS A 177 A 6 7 N ILE A 147 ? N ILE A 178 O ILE A 158 ? O ILE A 189 A 7 8 N LYS A 159 ? N LYS A 190 O LEU A 168 ? O LEU A 199 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 301 ? 5 'BINDING SITE FOR RESIDUE NA A 301' AC2 Software A PO4 302 ? 4 'BINDING SITE FOR RESIDUE PO4 A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 VAL A 51 ? VAL A 82 . ? 1_555 ? 2 AC1 5 ASP A 52 ? ASP A 83 . ? 1_555 ? 3 AC1 5 ASP A 137 ? ASP A 168 . ? 1_555 ? 4 AC1 5 HOH D . ? HOH A 406 . ? 1_555 ? 5 AC1 5 HOH D . ? HOH A 502 . ? 1_555 ? 6 AC2 4 LYS A 76 ? LYS A 107 . ? 1_555 ? 7 AC2 4 GLU A 88 ? GLU A 119 . ? 1_555 ? 8 AC2 4 LYS A 90 ? LYS A 121 . ? 1_555 ? 9 AC2 4 LYS A 90 ? LYS A 121 . ? 5_655 ? # _atom_sites.entry_id 4EXR _atom_sites.fract_transf_matrix[1][1] 0.012881 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012881 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011785 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLN 2 33 ? ? ? A . n A 1 3 ASP 3 34 ? ? ? A . n A 1 4 ASN 4 35 ? ? ? A . n A 1 5 THR 5 36 ? ? ? A . n A 1 6 LYS 6 37 ? ? ? A . n A 1 7 LYS 7 38 ? ? ? A . n A 1 8 GLU 8 39 ? ? ? A . n A 1 9 ALA 9 40 ? ? ? A . n A 1 10 ASN 10 41 ? ? ? A . n A 1 11 ALA 11 42 ? ? ? A . n A 1 12 SER 12 43 ? ? ? A . n A 1 13 ASN 13 44 ? ? ? A . n A 1 14 ASN 14 45 ? ? ? A . n A 1 15 ALA 15 46 ? ? ? A . n A 1 16 LEU 16 47 ? ? ? A . n A 1 17 LYS 17 48 ? ? ? A . n A 1 18 ASP 18 49 ? ? ? A . n A 1 19 GLU 19 50 ? ? ? A . n A 1 20 LYS 20 51 ? ? ? A . n A 1 21 ASN 21 52 ? ? ? A . n A 1 22 ASN 22 53 53 ASN ASN A . n A 1 23 GLU 23 54 54 GLU GLU A . n A 1 24 ASN 24 55 55 ASN ASN A . n A 1 25 LEU 25 56 56 LEU LEU A . n A 1 26 MSE 26 57 57 MSE MSE A . n A 1 27 GLU 27 58 58 GLU GLU A . n A 1 28 GLN 28 59 59 GLN GLN A . n A 1 29 ASP 29 60 60 ASP ASP A . n A 1 30 PHE 30 61 61 PHE PHE A . n A 1 31 LYS 31 62 62 LYS LYS A . n A 1 32 VAL 32 63 63 VAL VAL A . n A 1 33 PRO 33 64 64 PRO PRO A . n A 1 34 TYR 34 65 65 TYR TYR A . n A 1 35 THR 35 66 66 THR THR A . n A 1 36 ASP 36 67 67 ASP ASP A . n A 1 37 ALA 37 68 68 ALA ALA A . n A 1 38 ILE 38 69 69 ILE ILE A . n A 1 39 ASN 39 70 70 ASN ASN A . n A 1 40 ILE 40 71 71 ILE ILE A . n A 1 41 PHE 41 72 72 PHE PHE A . n A 1 42 LYS 42 73 73 LYS LYS A . n A 1 43 ASP 43 74 74 ASP ASP A . n A 1 44 LYS 44 75 75 LYS LYS A . n A 1 45 TYR 45 76 76 TYR TYR A . n A 1 46 LYS 46 77 77 LYS LYS A . n A 1 47 ASP 47 78 78 ASP ASP A . n A 1 48 ALA 48 79 79 ALA ALA A . n A 1 49 ASP 49 80 80 ASP ASP A . n A 1 50 ILE 50 81 81 ILE ILE A . n A 1 51 VAL 51 82 82 VAL VAL A . n A 1 52 ASP 52 83 83 ASP ASP A . n A 1 53 LEU 53 84 84 LEU LEU A . n A 1 54 SER 54 85 85 SER SER A . n A 1 55 LEU 55 86 86 LEU LEU A . n A 1 56 GLU 56 87 87 GLU GLU A . n A 1 57 ARG 57 88 88 ARG ARG A . n A 1 58 ASP 58 89 89 ASP ASP A . n A 1 59 LEU 59 90 90 LEU LEU A . n A 1 60 ASN 60 91 91 ASN ASN A . n A 1 61 LYS 61 92 92 LYS LYS A . n A 1 62 PHE 62 93 93 PHE PHE A . n A 1 63 VAL 63 94 94 VAL VAL A . n A 1 64 TYR 64 95 95 TYR TYR A . n A 1 65 THR 65 96 96 THR THR A . n A 1 66 VAL 66 97 97 VAL VAL A . n A 1 67 GLU 67 98 98 GLU GLU A . n A 1 68 GLY 68 99 99 GLY GLY A . n A 1 69 VAL 69 100 100 VAL VAL A . n A 1 70 ASP 70 101 101 ASP ASP A . n A 1 71 ASP 71 102 102 ASP ASP A . n A 1 72 ASN 72 103 103 ASN ASN A . n A 1 73 ASN 73 104 104 ASN ASN A . n A 1 74 GLU 74 105 105 GLU GLU A . n A 1 75 TYR 75 106 106 TYR TYR A . n A 1 76 LYS 76 107 107 LYS LYS A . n A 1 77 MSE 77 108 108 MSE MSE A . n A 1 78 LYS 78 109 109 LYS LYS A . n A 1 79 ILE 79 110 110 ILE ILE A . n A 1 80 ASP 80 111 111 ASP ASP A . n A 1 81 ALA 81 112 112 ALA ALA A . n A 1 82 ASN 82 113 113 ASN ASN A . n A 1 83 THR 83 114 114 THR THR A . n A 1 84 LYS 84 115 115 LYS LYS A . n A 1 85 ASP 85 116 116 ASP ASP A . n A 1 86 VAL 86 117 117 VAL VAL A . n A 1 87 LEU 87 118 118 LEU LEU A . n A 1 88 GLU 88 119 119 GLU GLU A . n A 1 89 ASP 89 120 120 ASP ASP A . n A 1 90 LYS 90 121 121 LYS LYS A . n A 1 91 THR 91 122 122 THR THR A . n A 1 92 GLU 92 123 123 GLU GLU A . n A 1 93 LYS 93 124 124 LYS LYS A . n A 1 94 LEU 94 125 125 LEU LEU A . n A 1 95 ASP 95 126 126 ASP ASP A . n A 1 96 SER 96 127 127 SER SER A . n A 1 97 GLU 97 128 128 GLU GLU A . n A 1 98 ASP 98 129 129 ASP ASP A . n A 1 99 LEU 99 130 130 LEU LEU A . n A 1 100 ASN 100 131 131 ASN ASN A . n A 1 101 GLY 101 132 132 GLY GLY A . n A 1 102 VAL 102 133 133 VAL VAL A . n A 1 103 ALA 103 134 134 ALA ALA A . n A 1 104 ARG 104 135 135 ARG ARG A . n A 1 105 LYS 105 136 136 LYS LYS A . n A 1 106 GLU 106 137 137 GLU GLU A . n A 1 107 LYS 107 138 138 LYS LYS A . n A 1 108 LEU 108 139 139 LEU LEU A . n A 1 109 ASP 109 140 140 ASP ASP A . n A 1 110 LEU 110 141 141 LEU LEU A . n A 1 111 ASN 111 142 142 ASN ASN A . n A 1 112 ASP 112 143 143 ASP ASP A . n A 1 113 ILE 113 144 144 ILE ILE A . n A 1 114 MSE 114 145 145 MSE MSE A . n A 1 115 THR 115 146 146 THR THR A . n A 1 116 PRO 116 147 147 PRO PRO A . n A 1 117 GLN 117 148 148 GLN GLN A . n A 1 118 GLN 118 149 149 GLN GLN A . n A 1 119 ALA 119 150 150 ALA ALA A . n A 1 120 MSE 120 151 151 MSE MSE A . n A 1 121 GLU 121 152 152 GLU GLU A . n A 1 122 ILE 122 153 153 ILE ILE A . n A 1 123 ALA 123 154 154 ALA ALA A . n A 1 124 LEU 124 155 155 LEU LEU A . n A 1 125 LYS 125 156 156 LYS LYS A . n A 1 126 GLU 126 157 157 GLU GLU A . n A 1 127 GLN 127 158 158 GLN GLN A . n A 1 128 ASN 128 159 159 ASN ASN A . n A 1 129 GLY 129 160 160 GLY GLY A . n A 1 130 ILE 130 161 161 ILE ILE A . n A 1 131 VAL 131 162 162 VAL VAL A . n A 1 132 LYS 132 163 163 LYS LYS A . n A 1 133 GLU 133 164 164 GLU GLU A . n A 1 134 TRP 134 165 165 TRP TRP A . n A 1 135 SER 135 166 166 SER SER A . n A 1 136 LEU 136 167 167 LEU LEU A . n A 1 137 ASP 137 168 168 ASP ASP A . n A 1 138 LYS 138 169 169 LYS LYS A . n A 1 139 ASP 139 170 170 ASP ASP A . n A 1 140 LEU 140 171 171 LEU LEU A . n A 1 141 ASP 141 172 172 ASP ASP A . n A 1 142 VAL 142 173 173 VAL VAL A . n A 1 143 THR 143 174 174 THR THR A . n A 1 144 PHE 144 175 175 PHE PHE A . n A 1 145 TYR 145 176 176 TYR TYR A . n A 1 146 LYS 146 177 177 LYS LYS A . n A 1 147 ILE 147 178 178 ILE ILE A . n A 1 148 ARG 148 179 179 ARG ARG A . n A 1 149 ILE 149 180 180 ILE ILE A . n A 1 150 ASP 150 181 181 ASP ASP A . n A 1 151 LYS 151 182 182 LYS LYS A . n A 1 152 ASP 152 183 183 ASP ASP A . n A 1 153 LYS 153 184 184 LYS LYS A . n A 1 154 ASN 154 185 185 ASN ASN A . n A 1 155 GLU 155 186 186 GLU GLU A . n A 1 156 TYR 156 187 187 TYR TYR A . n A 1 157 ASP 157 188 188 ASP ASP A . n A 1 158 ILE 158 189 189 ILE ILE A . n A 1 159 LYS 159 190 190 LYS LYS A . n A 1 160 VAL 160 191 191 VAL VAL A . n A 1 161 ASP 161 192 192 ASP ASP A . n A 1 162 SER 162 193 193 SER SER A . n A 1 163 LYS 163 194 194 LYS LYS A . n A 1 164 LYS 164 195 195 LYS LYS A . n A 1 165 GLY 165 196 196 GLY GLY A . n A 1 166 THR 166 197 197 THR THR A . n A 1 167 VAL 167 198 198 VAL VAL A . n A 1 168 LEU 168 199 199 LEU LEU A . n A 1 169 LYS 169 200 200 LYS LYS A . n A 1 170 VAL 170 201 201 VAL VAL A . n A 1 171 GLU 171 202 202 GLU GLU A . n A 1 172 LYS 172 203 203 LYS LYS A . n A 1 173 GLU 173 204 204 GLU GLU A . n A 1 174 ASP 174 205 ? ? ? A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 301 206 NA NA A . C 3 PO4 1 302 207 PO4 PO4 A . D 4 HOH 1 401 208 HOH HOH A . D 4 HOH 2 402 209 HOH HOH A . D 4 HOH 3 403 210 HOH HOH A . D 4 HOH 4 404 211 HOH HOH A . D 4 HOH 5 405 212 HOH HOH A . D 4 HOH 6 406 213 HOH HOH A . D 4 HOH 7 407 214 HOH HOH A . D 4 HOH 8 408 215 HOH HOH A . D 4 HOH 9 409 216 HOH HOH A . D 4 HOH 10 410 217 HOH HOH A . D 4 HOH 11 411 218 HOH HOH A . D 4 HOH 12 412 219 HOH HOH A . D 4 HOH 13 413 220 HOH HOH A . D 4 HOH 14 414 221 HOH HOH A . D 4 HOH 15 415 222 HOH HOH A . D 4 HOH 16 416 223 HOH HOH A . D 4 HOH 17 417 224 HOH HOH A . D 4 HOH 18 418 225 HOH HOH A . D 4 HOH 19 419 226 HOH HOH A . D 4 HOH 20 420 227 HOH HOH A . D 4 HOH 21 421 228 HOH HOH A . D 4 HOH 22 422 229 HOH HOH A . D 4 HOH 23 423 230 HOH HOH A . D 4 HOH 24 424 231 HOH HOH A . D 4 HOH 25 425 232 HOH HOH A . D 4 HOH 26 426 233 HOH HOH A . D 4 HOH 27 427 234 HOH HOH A . D 4 HOH 28 428 235 HOH HOH A . D 4 HOH 29 429 236 HOH HOH A . D 4 HOH 30 430 237 HOH HOH A . D 4 HOH 31 431 238 HOH HOH A . D 4 HOH 32 432 239 HOH HOH A . D 4 HOH 33 433 240 HOH HOH A . D 4 HOH 34 434 241 HOH HOH A . D 4 HOH 35 435 242 HOH HOH A . D 4 HOH 36 436 243 HOH HOH A . D 4 HOH 37 437 244 HOH HOH A . D 4 HOH 38 438 245 HOH HOH A . D 4 HOH 39 439 246 HOH HOH A . D 4 HOH 40 440 247 HOH HOH A . D 4 HOH 41 441 248 HOH HOH A . D 4 HOH 42 442 249 HOH HOH A . D 4 HOH 43 443 250 HOH HOH A . D 4 HOH 44 444 251 HOH HOH A . D 4 HOH 45 445 252 HOH HOH A . D 4 HOH 46 446 253 HOH HOH A . D 4 HOH 47 447 254 HOH HOH A . D 4 HOH 48 448 255 HOH HOH A . D 4 HOH 49 449 256 HOH HOH A . D 4 HOH 50 450 257 HOH HOH A . D 4 HOH 51 451 258 HOH HOH A . D 4 HOH 52 452 259 HOH HOH A . D 4 HOH 53 453 260 HOH HOH A . D 4 HOH 54 454 261 HOH HOH A . D 4 HOH 55 455 262 HOH HOH A . D 4 HOH 56 456 263 HOH HOH A . D 4 HOH 57 457 264 HOH HOH A . D 4 HOH 58 458 265 HOH HOH A . D 4 HOH 59 459 266 HOH HOH A . D 4 HOH 60 460 267 HOH HOH A . D 4 HOH 61 461 268 HOH HOH A . D 4 HOH 62 462 269 HOH HOH A . D 4 HOH 63 463 270 HOH HOH A . D 4 HOH 64 464 271 HOH HOH A . D 4 HOH 65 465 272 HOH HOH A . D 4 HOH 66 466 273 HOH HOH A . D 4 HOH 67 467 274 HOH HOH A . D 4 HOH 68 468 275 HOH HOH A . D 4 HOH 69 469 276 HOH HOH A . D 4 HOH 70 470 277 HOH HOH A . D 4 HOH 71 471 278 HOH HOH A . D 4 HOH 72 472 279 HOH HOH A . D 4 HOH 73 473 280 HOH HOH A . D 4 HOH 74 474 281 HOH HOH A . D 4 HOH 75 475 282 HOH HOH A . D 4 HOH 76 476 283 HOH HOH A . D 4 HOH 77 477 284 HOH HOH A . D 4 HOH 78 478 285 HOH HOH A . D 4 HOH 79 479 286 HOH HOH A . D 4 HOH 80 480 287 HOH HOH A . D 4 HOH 81 481 288 HOH HOH A . D 4 HOH 82 482 289 HOH HOH A . D 4 HOH 83 483 290 HOH HOH A . D 4 HOH 84 484 291 HOH HOH A . D 4 HOH 85 485 292 HOH HOH A . D 4 HOH 86 486 293 HOH HOH A . D 4 HOH 87 487 294 HOH HOH A . D 4 HOH 88 488 295 HOH HOH A . D 4 HOH 89 489 296 HOH HOH A . D 4 HOH 90 490 297 HOH HOH A . D 4 HOH 91 491 298 HOH HOH A . D 4 HOH 92 492 299 HOH HOH A . D 4 HOH 93 493 300 HOH HOH A . D 4 HOH 94 494 301 HOH HOH A . D 4 HOH 95 495 302 HOH HOH A . D 4 HOH 96 496 303 HOH HOH A . D 4 HOH 97 497 304 HOH HOH A . D 4 HOH 98 498 305 HOH HOH A . D 4 HOH 99 499 306 HOH HOH A . D 4 HOH 100 500 307 HOH HOH A . D 4 HOH 101 501 308 HOH HOH A . D 4 HOH 102 502 309 HOH HOH A . D 4 HOH 103 503 310 HOH HOH A . D 4 HOH 104 504 311 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 26 A MSE 57 ? MET SELENOMETHIONINE 2 A MSE 77 A MSE 108 ? MET SELENOMETHIONINE 3 A MSE 114 A MSE 145 ? MET SELENOMETHIONINE 4 A MSE 120 A MSE 151 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1470 ? 1 MORE -38 ? 1 'SSA (A^2)' 16270 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 77.6310000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A VAL 51 ? A VAL 82 ? 1_555 NA ? B NA . ? A NA 301 ? 1_555 OD1 ? A ASP 52 ? A ASP 83 ? 1_555 79.1 ? 2 O ? A VAL 51 ? A VAL 82 ? 1_555 NA ? B NA . ? A NA 301 ? 1_555 OD1 ? A ASP 137 ? A ASP 168 ? 1_555 128.4 ? 3 OD1 ? A ASP 52 ? A ASP 83 ? 1_555 NA ? B NA . ? A NA 301 ? 1_555 OD1 ? A ASP 137 ? A ASP 168 ? 1_555 93.1 ? 4 O ? A VAL 51 ? A VAL 82 ? 1_555 NA ? B NA . ? A NA 301 ? 1_555 O ? D HOH . ? A HOH 406 ? 1_555 89.2 ? 5 OD1 ? A ASP 52 ? A ASP 83 ? 1_555 NA ? B NA . ? A NA 301 ? 1_555 O ? D HOH . ? A HOH 406 ? 1_555 165.8 ? 6 OD1 ? A ASP 137 ? A ASP 168 ? 1_555 NA ? B NA . ? A NA 301 ? 1_555 O ? D HOH . ? A HOH 406 ? 1_555 87.8 ? 7 O ? A VAL 51 ? A VAL 82 ? 1_555 NA ? B NA . ? A NA 301 ? 1_555 O ? D HOH . ? A HOH 502 ? 1_555 96.4 ? 8 OD1 ? A ASP 52 ? A ASP 83 ? 1_555 NA ? B NA . ? A NA 301 ? 1_555 O ? D HOH . ? A HOH 502 ? 1_555 88.0 ? 9 OD1 ? A ASP 137 ? A ASP 168 ? 1_555 NA ? B NA . ? A NA 301 ? 1_555 O ? D HOH . ? A HOH 502 ? 1_555 134.5 ? 10 O ? D HOH . ? A HOH 406 ? 1_555 NA ? B NA . ? A NA 301 ? 1_555 O ? D HOH . ? A HOH 502 ? 1_555 101.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-27 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' database_2 3 3 'Structure model' pdbx_struct_conn_angle 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.classification' 2 2 'Structure model' '_software.name' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.value' 18 3 'Structure model' '_struct_conn.pdbx_dist_value' 19 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 31 3 'Structure model' '_struct_ref_seq_dif.details' 32 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 33 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 56.6430 _pdbx_refine_tls.origin_y 72.2797 _pdbx_refine_tls.origin_z -2.2828 _pdbx_refine_tls.T[1][1] 0.2114 _pdbx_refine_tls.T[2][2] 0.2685 _pdbx_refine_tls.T[3][3] 0.2358 _pdbx_refine_tls.T[1][2] 0.0133 _pdbx_refine_tls.T[1][3] -0.0106 _pdbx_refine_tls.T[2][3] -0.0272 _pdbx_refine_tls.L[1][1] 2.8434 _pdbx_refine_tls.L[2][2] 1.0392 _pdbx_refine_tls.L[3][3] 1.3972 _pdbx_refine_tls.L[1][2] 0.0705 _pdbx_refine_tls.L[1][3] -0.5496 _pdbx_refine_tls.L[2][3] 0.4389 _pdbx_refine_tls.S[1][1] -0.0795 _pdbx_refine_tls.S[2][2] 0.0830 _pdbx_refine_tls.S[3][3] 0.0006 _pdbx_refine_tls.S[1][2] 0.2158 _pdbx_refine_tls.S[1][3] -0.1498 _pdbx_refine_tls.S[2][3] -0.1773 _pdbx_refine_tls.S[2][1] -0.0142 _pdbx_refine_tls.S[3][1] 0.1516 _pdbx_refine_tls.S[3][2] -0.1979 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 0 _pdbx_refine_tls_group.selection_details ;chain 'A' and (resseq 53:204) ; _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 SCALA 3.3.20 ? package 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' ? ? ? 5 PHENIX 1.7.3 ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? # _pdbx_entry_details.entry_id 4EXR _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (RESIDUES 33-205) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 90 ? ? 56.26 -111.87 2 1 ASP A 101 ? ? -121.09 -153.22 3 1 ASP A 183 ? ? 59.15 -125.57 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 128 ? CG ? A GLU 97 CG 2 1 Y 1 A GLU 128 ? CD ? A GLU 97 CD 3 1 Y 1 A GLU 128 ? OE1 ? A GLU 97 OE1 4 1 Y 1 A GLU 128 ? OE2 ? A GLU 97 OE2 5 1 Y 1 A LYS 184 ? CG ? A LYS 153 CG 6 1 Y 1 A LYS 184 ? CD ? A LYS 153 CD 7 1 Y 1 A LYS 184 ? CE ? A LYS 153 CE 8 1 Y 1 A LYS 184 ? NZ ? A LYS 153 NZ 9 1 Y 1 A GLU 186 ? CG ? A GLU 155 CG 10 1 Y 1 A GLU 186 ? CD ? A GLU 155 CD 11 1 Y 1 A GLU 186 ? OE1 ? A GLU 155 OE1 12 1 Y 1 A GLU 186 ? OE2 ? A GLU 155 OE2 13 1 Y 1 A GLU 202 ? CG ? A GLU 171 CG 14 1 Y 1 A GLU 202 ? CD ? A GLU 171 CD 15 1 Y 1 A GLU 202 ? OE1 ? A GLU 171 OE1 16 1 Y 1 A GLU 202 ? OE2 ? A GLU 171 OE2 17 1 Y 1 A LYS 203 ? CE ? A LYS 172 CE 18 1 Y 1 A LYS 203 ? NZ ? A LYS 172 NZ 19 1 Y 1 A GLU 204 ? CG ? A GLU 173 CG 20 1 Y 1 A GLU 204 ? CD ? A GLU 173 CD 21 1 Y 1 A GLU 204 ? OE1 ? A GLU 173 OE1 22 1 Y 1 A GLU 204 ? OE2 ? A GLU 173 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLN 33 ? A GLN 2 3 1 Y 1 A ASP 34 ? A ASP 3 4 1 Y 1 A ASN 35 ? A ASN 4 5 1 Y 1 A THR 36 ? A THR 5 6 1 Y 1 A LYS 37 ? A LYS 6 7 1 Y 1 A LYS 38 ? A LYS 7 8 1 Y 1 A GLU 39 ? A GLU 8 9 1 Y 1 A ALA 40 ? A ALA 9 10 1 Y 1 A ASN 41 ? A ASN 10 11 1 Y 1 A ALA 42 ? A ALA 11 12 1 Y 1 A SER 43 ? A SER 12 13 1 Y 1 A ASN 44 ? A ASN 13 14 1 Y 1 A ASN 45 ? A ASN 14 15 1 Y 1 A ALA 46 ? A ALA 15 16 1 Y 1 A LEU 47 ? A LEU 16 17 1 Y 1 A LYS 48 ? A LYS 17 18 1 Y 1 A ASP 49 ? A ASP 18 19 1 Y 1 A GLU 50 ? A GLU 19 20 1 Y 1 A LYS 51 ? A LYS 20 21 1 Y 1 A ASN 52 ? A ASN 21 22 1 Y 1 A ASP 205 ? A ASP 174 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'PHOSPHATE ION' PO4 4 water HOH #