HEADER HYDROLASE 04-MAY-12 4F0J TITLE CRYSTAL STRUCTURE OF A PROBABLE HYDROLYTIC ENZYME (PA3053) FROM TITLE 2 PSEUDOMONAS AERUGINOSA PAO1 AT 1.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE HYDROLYTIC ENZYME; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 22-335; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 5 GENE: PA3053; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS ALPHA/BETA HYDROLASE FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 01-FEB-23 4F0J 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4F0J 1 REMARK REVDAT 1 04-JUL-12 4F0J 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PROBABLE HYDROLYTIC ENZYME (PA3053) JRNL TITL 2 FROM PSEUDOMONAS AERUGINOSA PAO1 AT 1.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 49133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2484 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3123 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2471 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 283 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.09000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : 2.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.848 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2635 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1814 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3575 ; 1.703 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4384 ; 0.974 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 327 ; 6.097 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;35.857 ;23.386 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 421 ;12.068 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.159 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 377 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2937 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 564 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 127 REMARK 3 ORIGIN FOR THE GROUP (A): 50.0760 10.4280 5.4110 REMARK 3 T TENSOR REMARK 3 T11: 0.1127 T22: 0.0928 REMARK 3 T33: 0.0259 T12: -0.0047 REMARK 3 T13: 0.0037 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.0347 L22: 0.4540 REMARK 3 L33: 0.4071 L12: 0.0250 REMARK 3 L13: 0.0536 L23: -0.0672 REMARK 3 S TENSOR REMARK 3 S11: -0.0607 S12: 0.0801 S13: 0.0984 REMARK 3 S21: -0.0537 S22: 0.0356 S23: -0.0409 REMARK 3 S31: -0.0345 S32: 0.0382 S33: 0.0251 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 128 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): 46.3660 4.9140 18.1630 REMARK 3 T TENSOR REMARK 3 T11: 0.1237 T22: 0.1146 REMARK 3 T33: 0.0142 T12: -0.0003 REMARK 3 T13: -0.0048 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 2.2913 L22: 1.1374 REMARK 3 L33: 0.3139 L12: -0.5352 REMARK 3 L13: -0.3483 L23: 0.1879 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: -0.1561 S13: -0.0695 REMARK 3 S21: 0.0402 S22: -0.0051 S23: -0.0867 REMARK 3 S31: 0.0293 S32: 0.0024 S33: 0.0160 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 179 A 272 REMARK 3 ORIGIN FOR THE GROUP (A): 36.6520 17.0580 11.2670 REMARK 3 T TENSOR REMARK 3 T11: 0.1434 T22: 0.0901 REMARK 3 T33: 0.0669 T12: 0.0110 REMARK 3 T13: -0.0001 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.9709 L22: 0.3061 REMARK 3 L33: 0.8500 L12: -0.0120 REMARK 3 L13: 0.4551 L23: -0.1721 REMARK 3 S TENSOR REMARK 3 S11: -0.0535 S12: -0.0632 S13: 0.2412 REMARK 3 S21: 0.0208 S22: 0.0006 S23: 0.0306 REMARK 3 S31: -0.1416 S32: -0.0081 S33: 0.0528 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 273 A 293 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6910 17.8440 24.4300 REMARK 3 T TENSOR REMARK 3 T11: 0.2045 T22: 0.2407 REMARK 3 T33: 0.1397 T12: 0.0347 REMARK 3 T13: 0.0370 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 9.1564 L22: 1.6819 REMARK 3 L33: 2.1354 L12: -0.6895 REMARK 3 L13: -1.0658 L23: 1.6759 REMARK 3 S TENSOR REMARK 3 S11: 0.0755 S12: -0.1719 S13: 0.3822 REMARK 3 S21: -0.0355 S22: -0.1411 S23: 0.2316 REMARK 3 S31: -0.2256 S32: -0.3250 S33: 0.0656 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 294 A 333 REMARK 3 ORIGIN FOR THE GROUP (A): 49.6290 17.2500 26.1380 REMARK 3 T TENSOR REMARK 3 T11: 0.1703 T22: 0.1691 REMARK 3 T33: 0.0549 T12: 0.0123 REMARK 3 T13: -0.0226 T23: -0.0830 REMARK 3 L TENSOR REMARK 3 L11: 2.4500 L22: 1.8749 REMARK 3 L33: 1.0444 L12: -0.3100 REMARK 3 L13: -0.5114 L23: -0.5236 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: -0.3266 S13: 0.2928 REMARK 3 S21: 0.0981 S22: 0.0239 S23: -0.0590 REMARK 3 S31: 0.0168 S32: 0.0584 S33: -0.0258 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 6. NONAETHYLENE GLYCOL (2PE), SULFATE ION (SO4), REMARK 3 CHLORIDE ION (CL) AND 1,2-ETHANEDIOL (EDO) MOLECULES FROM THE REMARK 3 CRYSTALLIZATION/CRYOPROTECTION SOLUTION ARE MODELED. 7. THE TLS REMARK 3 GROUPS WERE ASSIGNED WITH THE AID OF TLSMD SERVER. REMARK 4 REMARK 4 4F0J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072301. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE DECEMBER 29, 2011 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49169 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 27.811 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.67300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.00M AMMONIUM SULFATE, 2.00% REMARK 280 POLYETHYLENE GLYCOL 400, 0.1M SODIUM HEPES PH 7.5, NANODROP, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 31.61700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.44300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.61700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.44300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -130.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 63.23400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 779 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLN A 334 REMARK 465 PRO A 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 298 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 321 CG CD OE1 OE2 REMARK 470 THR A 333 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 206 O2 SO4 A 402 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 129 O HOH A 590 3645 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 105 -125.70 62.41 REMARK 500 SER A 142 -118.46 60.48 REMARK 500 ASN A 166 53.33 38.71 REMARK 500 GLN A 302 66.74 -118.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2PE A 400 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-419247 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 22-335 OF THE TARGET REMARK 999 SEQUENCE. DBREF 4F0J A 22 335 UNP Q9HZF5 Q9HZF5_PSEAE 22 335 SEQADV 4F0J GLY A 0 UNP Q9HZF5 EXPRESSION TAG SEQRES 1 A 315 GLY SER GLN ALA PRO VAL TYR GLY GLU ARG LEU GLU GLY SEQRES 2 A 315 PHE ASP TYR ALA TYR PRO VAL HIS TYR LEU ASP PHE THR SEQRES 3 A 315 SER GLN GLY GLN PRO LEU SER MSE ALA TYR LEU ASP VAL SEQRES 4 A 315 ALA PRO LYS LYS ALA ASN GLY ARG THR ILE LEU LEU MSE SEQRES 5 A 315 HIS GLY LYS ASN PHE CYS ALA GLY THR TRP GLU ARG THR SEQRES 6 A 315 ILE ASP VAL LEU ALA ASP ALA GLY TYR ARG VAL ILE ALA SEQRES 7 A 315 VAL ASP GLN VAL GLY PHE CYS LYS SER SER LYS PRO ALA SEQRES 8 A 315 HIS TYR GLN TYR SER PHE GLN GLN LEU ALA ALA ASN THR SEQRES 9 A 315 HIS ALA LEU LEU GLU ARG LEU GLY VAL ALA ARG ALA SER SEQRES 10 A 315 VAL ILE GLY HIS SER MSE GLY GLY MSE LEU ALA THR ARG SEQRES 11 A 315 TYR ALA LEU LEU TYR PRO ARG GLN VAL GLU ARG LEU VAL SEQRES 12 A 315 LEU VAL ASN PRO ILE GLY LEU GLU ASP TRP LYS ALA LEU SEQRES 13 A 315 GLY VAL PRO TRP ARG SER VAL ASP ASP TRP TYR ARG ARG SEQRES 14 A 315 ASP LEU GLN THR SER ALA GLU GLY ILE ARG GLN TYR GLN SEQRES 15 A 315 GLN ALA THR TYR TYR ALA GLY GLU TRP ARG PRO GLU PHE SEQRES 16 A 315 ASP ARG TRP VAL GLN MSE GLN ALA GLY MSE TYR ARG GLY SEQRES 17 A 315 LYS GLY ARG GLU SER VAL ALA TRP ASN SER ALA LEU THR SEQRES 18 A 315 TYR ASP MSE ILE PHE THR GLN PRO VAL VAL TYR GLU LEU SEQRES 19 A 315 ASP ARG LEU GLN MSE PRO THR LEU LEU LEU ILE GLY GLU SEQRES 20 A 315 LYS ASP ASN THR ALA ILE GLY LYS ASP ALA ALA PRO ALA SEQRES 21 A 315 GLU LEU LYS ALA ARG LEU GLY ASN TYR ALA GLN LEU GLY SEQRES 22 A 315 LYS ASP ALA ALA ARG ARG ILE PRO GLN ALA THR LEU VAL SEQRES 23 A 315 GLU PHE PRO ASP LEU GLY HIS THR PRO GLN ILE GLN ALA SEQRES 24 A 315 PRO GLU ARG PHE HIS GLN ALA LEU LEU GLU GLY LEU GLN SEQRES 25 A 315 THR GLN PRO MODRES 4F0J MSE A 54 MET SELENOMETHIONINE MODRES 4F0J MSE A 72 MET SELENOMETHIONINE MODRES 4F0J MSE A 143 MET SELENOMETHIONINE MODRES 4F0J MSE A 146 MET SELENOMETHIONINE MODRES 4F0J MSE A 221 MET SELENOMETHIONINE MODRES 4F0J MSE A 225 MET SELENOMETHIONINE MODRES 4F0J MSE A 244 MET SELENOMETHIONINE MODRES 4F0J MSE A 259 MET SELENOMETHIONINE HET MSE A 54 8 HET MSE A 72 13 HET MSE A 143 8 HET MSE A 146 8 HET MSE A 221 8 HET MSE A 225 8 HET MSE A 244 8 HET MSE A 259 8 HET 2PE A 400 7 HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET EDO A 410 4 HET EDO A 411 4 HET EDO A 412 4 HET CL A 413 1 HET CL A 414 1 HETNAM MSE SELENOMETHIONINE HETNAM 2PE NONAETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 2PE C18 H38 O10 FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 EDO 8(C2 H6 O2) FORMUL 15 CL 2(CL 1-) FORMUL 17 HOH *283(H2 O) HELIX 1 1 CYS A 78 THR A 81 5 4 HELIX 2 2 TRP A 82 ALA A 92 1 11 HELIX 3 3 SER A 116 LEU A 131 1 16 HELIX 4 4 SER A 142 TYR A 155 1 14 HELIX 5 5 ASP A 172 GLY A 177 5 6 HELIX 6 6 SER A 182 LEU A 191 1 10 HELIX 7 7 SER A 194 TYR A 206 1 13 HELIX 8 8 ARG A 212 GLU A 214 5 3 HELIX 9 9 PHE A 215 TYR A 226 1 12 HELIX 10 10 GLY A 230 GLN A 248 1 19 HELIX 11 11 VAL A 250 LEU A 257 5 8 HELIX 12 12 GLY A 274 ALA A 278 5 5 HELIX 13 13 PRO A 279 ALA A 284 1 6 HELIX 14 14 ASN A 288 ILE A 300 1 13 HELIX 15 15 THR A 314 ALA A 319 1 6 HELIX 16 16 ALA A 319 GLN A 332 1 14 SHEET 1 A 8 HIS A 41 SER A 47 0 SHEET 2 A 8 GLN A 50 VAL A 59 -1 O TYR A 56 N HIS A 41 SHEET 3 A 8 ARG A 95 VAL A 99 -1 O VAL A 96 N VAL A 59 SHEET 4 A 8 THR A 68 MSE A 72 1 N ILE A 69 O ILE A 97 SHEET 5 A 8 ALA A 136 HIS A 141 1 O ILE A 139 N LEU A 70 SHEET 6 A 8 VAL A 159 VAL A 165 1 O VAL A 163 N VAL A 138 SHEET 7 A 8 THR A 261 GLY A 266 1 O LEU A 262 N LEU A 164 SHEET 8 A 8 ALA A 303 PHE A 308 1 O VAL A 306 N LEU A 263 SSBOND 1 CYS A 78 CYS A 105 1555 1555 2.05 LINK C SER A 53 N MSE A 54 1555 1555 1.34 LINK C MSE A 54 N ALA A 55 1555 1555 1.33 LINK C LEU A 71 N MSE A 72 1555 1555 1.33 LINK C MSE A 72 N HIS A 73 1555 1555 1.35 LINK C SER A 142 N MSE A 143 1555 1555 1.35 LINK C MSE A 143 N GLY A 144 1555 1555 1.32 LINK C GLY A 145 N MSE A 146 1555 1555 1.32 LINK C MSE A 146 N LEU A 147 1555 1555 1.33 LINK C GLN A 220 N MSE A 221 1555 1555 1.34 LINK C MSE A 221 N GLN A 222 1555 1555 1.32 LINK C GLY A 224 N MSE A 225 1555 1555 1.33 LINK C MSE A 225 N TYR A 226 1555 1555 1.34 LINK C ASP A 243 N MSE A 244 1555 1555 1.34 LINK C MSE A 244 N ILE A 245 1555 1555 1.34 LINK C GLN A 258 N MSE A 259 1555 1555 1.33 LINK C MSE A 259 N PRO A 260 1555 1555 1.36 SITE 1 AC1 2 TRP A 236 HOH A 763 SITE 1 AC2 7 ALA A 195 GLU A 196 ARG A 227 HOH A 593 SITE 2 AC2 7 HOH A 618 HOH A 737 HOH A 769 SITE 1 AC3 9 GLY A 74 LYS A 75 ASN A 76 PHE A 77 SITE 2 AC3 9 HIS A 141 SER A 142 TYR A 206 HIS A 313 SITE 3 AC3 9 EDO A 407 SITE 1 AC4 5 ALA A 319 PRO A 320 GLU A 321 ARG A 322 SITE 2 AC4 5 HOH A 776 SITE 1 AC5 7 ARG A 181 ARG A 189 GLY A 274 LYS A 275 SITE 2 AC5 7 ASP A 276 ALA A 277 EDO A 406 SITE 1 AC6 7 VAL A 178 PRO A 179 ARG A 181 TRP A 186 SITE 2 AC6 7 GLY A 274 ALA A 277 HOH A 529 SITE 1 AC7 6 TRP A 186 ALA A 272 GLY A 274 LYS A 275 SITE 2 AC7 6 SO4 A 404 HOH A 609 SITE 1 AC8 6 SER A 142 TYR A 201 TYR A 206 HIS A 313 SITE 2 AC8 6 SO4 A 402 HOH A 581 SITE 1 AC9 8 HIS A 73 GLY A 74 PHE A 77 THR A 81 SITE 2 AC9 8 TRP A 82 HIS A 141 GLN A 316 HOH A 674 SITE 1 BC1 5 ARG A 95 GLU A 129 ARG A 130 LEU A 131 SITE 2 BC1 5 HOH A 775 SITE 1 BC2 8 GLY A 103 PHE A 104 CYS A 105 LYS A 109 SITE 2 BC2 8 MSE A 225 VAL A 234 HOH A 565 HOH A 781 SITE 1 BC3 4 TRP A 180 ARG A 181 SER A 182 ASP A 185 SITE 1 BC4 5 GLY A 33 ASP A 35 ASP A 185 ARG A 217 SITE 2 BC4 5 HOH A 562 SITE 1 BC5 1 ARG A 256 SITE 1 BC6 3 GLN A 118 HOH A 592 HOH A 734 CRYST1 63.234 82.886 58.464 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015814 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012065 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017105 0.00000