HEADER PHOSPHATE-BINDING PROTEIN 06-MAY-12 4F18 TITLE SUBATOMIC RESOLUTION STRUCTURE OF A HIGH AFFINITY PERIPLASMIC TITLE 2 PHOSPHATE-BINDING PROTEIN (PFLUDING) BOUND WITH ARSENATE AT PH 8.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ALKALINE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 3 ORGANISM_TAXID: 216595; SOURCE 4 STRAIN: SBW25; SOURCE 5 GENE: PFLU_2427; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHATE-BINDING PROTEIN, PSTS, PERIPLASMIC BINDING PROTEIN, DING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.ELIAS,A.WELLNER,K.GOLDIN,E.CHABRIERE,D.S.TAWFIK REVDAT 5 13-SEP-23 4F18 1 REMARK SEQADV REVDAT 4 21-NOV-12 4F18 1 JRNL REVDAT 3 17-OCT-12 4F18 1 JRNL REVDAT 2 03-OCT-12 4F18 1 JRNL REVDAT 1 05-SEP-12 4F18 0 JRNL AUTH M.ELIAS,A.WELLNER,K.GOLDIN-AZULAY,E.CHABRIERE,J.A.VORHOLT, JRNL AUTH 2 T.J.ERB,D.S.TAWFIK JRNL TITL THE MOLECULAR BASIS OF PHOSPHATE DISCRIMINATION IN JRNL TITL 2 ARSENATE-RICH ENVIRONMENTS. JRNL REF NATURE V. 491 134 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 23034649 JRNL DOI 10.1038/NATURE11517 REMARK 2 REMARK 2 RESOLUTION. 0.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 173958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.095 REMARK 3 R VALUE (WORKING SET) : 0.095 REMARK 3 FREE R VALUE : 0.110 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9156 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11820 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.1740 REMARK 3 BIN FREE R VALUE SET COUNT : 622 REMARK 3 BIN FREE R VALUE : 0.1990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2698 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 991 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.017 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.017 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.987 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.983 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3375 ; 0.026 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2672 ; 0.011 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4700 ; 2.159 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6298 ; 1.274 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 6.813 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;38.971 ;25.317 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 473 ;11.361 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;19.317 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 539 ; 0.147 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4102 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 693 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6047 ; 6.926 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 991 ;34.410 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5926 ; 7.751 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4F18 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072326. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.826 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 183115 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.960 REMARK 200 RESOLUTION RANGE LOW (A) : 33.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 3.290 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03300 REMARK 200 FOR THE DATA SET : 18.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.95 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.25500 REMARK 200 FOR SHELL : 4.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3G63 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-26% PEG 8000, 200MM LI2SO4, 1MM REMARK 280 CACL2, 100MM ARSENATE PH8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 62.08000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1375 REMARK 465 HIS A 1376 REMARK 465 HIS A 1377 REMARK 465 HIS A 1378 REMARK 465 HIS A 1379 REMARK 465 HIS A 1380 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR A 1163 O REMARK 480 ALA A 1374 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 1062 HO2 8AR A 1401 1.46 REMARK 500 HH12 ARG A 1153 O HOH A 5944 1.49 REMARK 500 O HOH A 5573 O HOH A 5949 1.88 REMARK 500 O HOH A 5936 O HOH A 5959 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 5255 O HOH A 5975 2556 1.35 REMARK 500 O HOH A 5644 O HOH A 5936 1455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A1000 C MET A1000 O -0.157 REMARK 500 LYS A1064 CD LYS A1064 CE -0.153 REMARK 500 SER A1142 CB SER A1142 OG -0.128 REMARK 500 SER A1142 CB SER A1142 OG -0.100 REMARK 500 THR A1163 C THR A1163 O 0.164 REMARK 500 ASN A1165 CG ASN A1165 OD1 -0.152 REMARK 500 ARG A1227 CZ ARG A1227 NH1 0.186 REMARK 500 GLN A1237 CD GLN A1237 OE1 -0.148 REMARK 500 ASN A1275 CA ASN A1275 C 0.208 REMARK 500 SER A1285 CB SER A1285 OG 0.085 REMARK 500 SER A1321 CA SER A1321 CB 0.097 REMARK 500 SER A1321 CB SER A1321 OG -0.086 REMARK 500 GLU A1372 CD GLU A1372 OE1 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A1000 CG - SD - CE ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG A1227 NE - CZ - NH2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A1274 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 ARG A1368 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A1007 130.37 -38.25 REMARK 500 LYS A1100 106.37 -160.69 REMARK 500 LYS A1100 106.37 -165.51 REMARK 500 THR A1163 57.14 -95.58 REMARK 500 LYS A1224 -31.59 -134.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A1163 10.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8AR A 1401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Q9T RELATED DB: PDB REMARK 900 THE SAME PROTEIN AT LOWER RESOLUTION WITH BOUND PHOSPHATE REMARK 900 RELATED ID: 3G63 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH BOUND PHOSPHATE AT PH 8.5 AND 0.88A RESOLUTION REMARK 900 RELATED ID: 3G62 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH BOUND PHOSPHATE AT PH 4.5 AND 0.98A RESOLUTION REMARK 900 RELATED ID: 4F18 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH BOUND ARSENATE AT PH 4.5 AND 0.95A RESOLUTION DBREF 4F18 A 1001 1370 UNP C3K8K1 C3K8K1_PSEFS 25 394 SEQADV 4F18 MET A 1000 UNP C3K8K1 EXPRESSION TAG SEQADV 4F18 LEU A 1371 UNP C3K8K1 EXPRESSION TAG SEQADV 4F18 GLU A 1372 UNP C3K8K1 EXPRESSION TAG SEQADV 4F18 ALA A 1373 UNP C3K8K1 EXPRESSION TAG SEQADV 4F18 ALA A 1374 UNP C3K8K1 EXPRESSION TAG SEQADV 4F18 HIS A 1375 UNP C3K8K1 EXPRESSION TAG SEQADV 4F18 HIS A 1376 UNP C3K8K1 EXPRESSION TAG SEQADV 4F18 HIS A 1377 UNP C3K8K1 EXPRESSION TAG SEQADV 4F18 HIS A 1378 UNP C3K8K1 EXPRESSION TAG SEQADV 4F18 HIS A 1379 UNP C3K8K1 EXPRESSION TAG SEQADV 4F18 HIS A 1380 UNP C3K8K1 EXPRESSION TAG SEQRES 1 A 381 MET ASP ILE ASN GLY GLY GLY ALA THR LEU PRO GLN ALA SEQRES 2 A 381 LEU TYR GLN THR SER GLY VAL LEU THR ALA GLY PHE ALA SEQRES 3 A 381 GLN TYR ILE GLY VAL GLY SER GLY ASN GLY LYS ALA ALA SEQRES 4 A 381 PHE LEU ASN ASN ASP TYR THR LYS PHE GLN ALA GLY VAL SEQRES 5 A 381 THR ASN LYS ASN VAL HIS TRP ALA GLY SER ASP SER LYS SEQRES 6 A 381 LEU SER ALA THR GLU LEU SER THR TYR ALA SER ALA LYS SEQRES 7 A 381 GLN PRO THR TRP GLY LYS LEU ILE GLN VAL PRO SER VAL SEQRES 8 A 381 GLY THR SER VAL ALA ILE PRO PHE ASN LYS SER GLY SER SEQRES 9 A 381 ALA ALA VAL ASP LEU SER VAL GLN GLU LEU CYS GLY VAL SEQRES 10 A 381 PHE SER GLY ARG ILE ASN THR TRP ASP GLY ILE SER GLY SEQRES 11 A 381 SER GLY ARG THR GLY PRO ILE VAL VAL VAL TYR ARG SER SEQRES 12 A 381 GLU SER SER GLY THR THR GLU LEU PHE THR ARG PHE LEU SEQRES 13 A 381 ASN ALA LYS CYS ASN ALA GLU THR GLY ASN PHE ALA VAL SEQRES 14 A 381 THR THR THR PHE GLY THR SER PHE SER GLY GLY LEU PRO SEQRES 15 A 381 ALA GLY ALA VAL ALA ALA THR GLY SER GLN GLY VAL MET SEQRES 16 A 381 THR ALA LEU ALA ALA GLY ASP GLY ARG ILE THR TYR MET SEQRES 17 A 381 SER PRO ASP PHE ALA ALA PRO THR LEU ALA GLY LEU ASP SEQRES 18 A 381 ASP ALA THR LYS VAL ALA ARG VAL GLY LYS ASN VAL ALA SEQRES 19 A 381 THR ASN THR GLN GLY VAL SER PRO ALA ALA ALA ASN VAL SEQRES 20 A 381 SER ALA ALA ILE GLY ALA VAL PRO VAL PRO ALA ALA ALA SEQRES 21 A 381 ASP ARG SER ASN PRO ASP ALA TRP VAL PRO VAL PHE GLY SEQRES 22 A 381 PRO ASP ASN THR ALA GLY VAL GLN PRO TYR PRO THR SER SEQRES 23 A 381 GLY TYR PRO ILE LEU GLY PHE THR ASN LEU ILE PHE SER SEQRES 24 A 381 GLN CYS TYR ALA ASP ALA THR GLN THR THR GLN VAL ARG SEQRES 25 A 381 ASP PHE PHE THR LYS HIS TYR GLY ALA SER ASN ASN ASN SEQRES 26 A 381 ASP ALA ALA ILE THR ALA ASN ALA PHE VAL PRO LEU PRO SEQRES 27 A 381 THR ALA TRP LYS ALA THR VAL ARG ALA SER PHE LEU THR SEQRES 28 A 381 ALA SER ASN ALA LEU SER ILE GLY ASN THR ASN VAL CYS SEQRES 29 A 381 ASN GLY ILE GLY ARG PRO LEU LEU GLU ALA ALA HIS HIS SEQRES 30 A 381 HIS HIS HIS HIS HET 8AR A1401 6 HETNAM 8AR HYDROGEN ARSENATE FORMUL 2 8AR AS H O4 2- FORMUL 3 HOH *991(H2 O) HELIX 1 1 PRO A 1010 GLN A 1015 1 6 HELIX 2 2 GLY A 1031 ASN A 1042 1 12 HELIX 3 3 ASP A 1043 PHE A 1047 5 5 HELIX 4 4 SER A 1066 LYS A 1077 1 12 HELIX 5 5 LYS A 1077 GLY A 1082 1 6 HELIX 6 6 SER A 1109 GLY A 1119 1 11 HELIX 7 7 THR A 1123 ILE A 1127 5 5 HELIX 8 8 SER A 1145 CYS A 1159 1 15 HELIX 9 9 THR A 1171 SER A 1175 5 5 HELIX 10 10 THR A 1188 ALA A 1198 1 11 HELIX 11 11 THR A 1215 ASP A 1221 5 7 HELIX 12 12 ALA A 1242 ASN A 1245 5 4 HELIX 13 13 VAL A 1246 ALA A 1252 1 7 HELIX 14 14 ALA A 1257 ARG A 1261 5 5 HELIX 15 15 ASN A 1263 VAL A 1268 5 6 HELIX 16 16 ASP A 1303 TYR A 1318 1 16 HELIX 17 17 ASN A 1324 ASN A 1331 1 8 HELIX 18 18 PRO A 1337 LEU A 1349 1 13 SHEET 1 A 5 ILE A1028 GLY A1029 0 SHEET 2 A 5 GLY A1004 GLY A1006 1 N GLY A1006 O ILE A1028 SHEET 3 A 5 TRP A1058 SER A1061 1 O GLY A1060 N GLY A1005 SHEET 4 A 5 LEU A1290 SER A1298 -1 O ASN A1294 N SER A1061 SHEET 5 A 5 LEU A1084 SER A1093 -1 N SER A1089 O THR A1293 SHEET 1 B 4 PHE A1098 ASN A1099 0 SHEET 2 B 4 ARG A1203 ILE A1204 -1 O ARG A1203 N ASN A1099 SHEET 3 B 4 VAL A1137 ARG A1141 1 N VAL A1139 O ILE A1204 SHEET 4 B 4 VAL A1185 ALA A1187 1 O VAL A1185 N VAL A1138 SHEET 1 C 2 ASP A1107 LEU A1108 0 SHEET 2 C 2 ARG A1227 VAL A1228 1 O ARG A1227 N LEU A1108 SHEET 1 D 2 PHE A1271 GLY A1272 0 SHEET 2 D 2 GLN A1280 PRO A1281 1 O GLN A1280 N GLY A1272 SSBOND 1 CYS A 1114 CYS A 1159 1555 1555 2.03 SSBOND 2 CYS A 1300 CYS A 1363 1555 1555 2.09 SITE 1 AC1 10 ALA A1007 THR A1008 LEU A1009 GLY A1031 SITE 2 AC1 10 SER A1032 ASP A1062 ARG A1141 SER A1145 SITE 3 AC1 10 GLY A1146 THR A1147 CRYST1 36.900 124.160 40.900 90.00 116.51 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027100 0.000000 0.013518 0.00000 SCALE2 0.000000 0.008054 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027323 0.00000