HEADER TRANSFERASE,SIGNALING PROTEIN/INHIBITOR 07-MAY-12 4F1T TITLE CRYSTAL STRUCTURE OF THE ROCO4 KINASE DOMAIN FROM D. DISCOIDEUM BOUND TITLE 2 TO THE ROCK INHIBITOR H1152 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE ROCO4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ROCO4 KINASE DOMAIN, UNP RESIDUES 1019-1292; COMPND 5 SYNONYM: RAS OF COMPLEX PROTEINS AND C-TERMINAL OF ROC 4; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_COMMON: SLIME MOLD; SOURCE 4 ORGANISM_TAXID: 44689; SOURCE 5 STRAIN: AX3; SOURCE 6 GENE: DDB_G0288251, ROCO4; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX4T1 NTEV KEYWDS PROTEIN KINASE, LRRK2, ROCO, KINASE, ATP-BINDING, NUCLEOTIDE-BINDING, KEYWDS 2 SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE, SIGNALING PROTEIN, KEYWDS 3 SIGNALING PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.K.GILSBACH,I.R.VETTER,A.WITTINGHOFER,A.KORTHOLT REVDAT 3 13-SEP-23 4F1T 1 REMARK SEQADV REVDAT 2 11-JUL-12 4F1T 1 JRNL REVDAT 1 27-JUN-12 4F1T 0 JRNL AUTH B.K.GILSBACH,F.Y.HO,I.R.VETTER,P.J.VAN HAASTERT, JRNL AUTH 2 A.WITTINGHOFER,A.KORTHOLT JRNL TITL ROCO KINASE STRUCTURES GIVE INSIGHTS INTO THE MECHANISM OF JRNL TITL 2 PARKINSON DISEASE-RELATED LEUCINE-RICH-REPEAT KINASE 2 JRNL TITL 3 MUTATIONS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 10322 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22689969 JRNL DOI 10.1073/PNAS.1203223109 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0093 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 804 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 907 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2160 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.276 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.210 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.603 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2258 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3059 ; 1.953 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 269 ; 7.754 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;39.418 ;24.242 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 399 ;17.899 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.626 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 331 ; 0.143 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1686 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 4 REMARK 4 4F1T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072347. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16153 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DTC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS- TRIS, 0.2 M NA/K TARTRATE; REMARK 280 11% PEG 3350, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 176.26000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 21.64000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 21.64000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 264.39000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 21.64000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 21.64000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.13000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 21.64000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 21.64000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 264.39000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 21.64000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 21.64000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.13000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 176.26000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1006 REMARK 465 ALA A 1007 REMARK 465 MET A 1008 REMARK 465 GLY A 1009 REMARK 465 GLY A 1010 REMARK 465 SER A 1011 REMARK 465 GLU A 1012 REMARK 465 PHE A 1013 REMARK 465 PRO A 1014 REMARK 465 LYS A 1015 REMARK 465 SER A 1016 REMARK 465 LEU A 1059 REMARK 465 GLY A 1060 REMARK 465 ASP A 1061 REMARK 465 SER A 1062 REMARK 465 GLU A 1063 REMARK 465 GLY A 1064 REMARK 465 GLU A 1065 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1017 CG CD NE CZ NH1 NH2 REMARK 470 LEU A1018 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 1022 OE2 GLU A 1025 1.39 REMARK 500 O GLU A 1025 CG1 VAL A 1046 1.69 REMARK 500 O LYS A 1034 O GLY A 1038 1.76 REMARK 500 NH2 ARG A 1077 O GLY A 1179 1.97 REMARK 500 N THR A 1066 CG1 ILE A 1069 1.98 REMARK 500 N THR A 1066 CD1 ILE A 1069 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A1122 NE2 HIS A1122 CD2 -0.073 REMARK 500 HIS A1152 NE2 HIS A1152 CD2 -0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A1019 C - N - CD ANGL. DEV. = -12.9 DEGREES REMARK 500 GLN A1183 CB - CA - C ANGL. DEV. = 23.1 DEGREES REMARK 500 SER A1187 CB - CA - C ANGL. DEV. = -22.7 DEGREES REMARK 500 ASP A1275 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A1029 -50.42 -128.42 REMARK 500 GLU A1070 49.28 -88.02 REMARK 500 ASN A1099 70.65 59.51 REMARK 500 ARG A1153 -9.46 84.68 REMARK 500 HIS A1186 -51.08 -132.91 REMARK 500 ILE A1203 -73.64 -93.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 1022 ASP A 1023 -113.90 REMARK 500 LYS A 1034 GLY A 1035 -107.57 REMARK 500 VAL A 1188 SER A 1189 -149.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H52 A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H52 A 1302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F0F RELATED DB: PDB REMARK 900 THE SAME PROTEIN BOUND TO APPCP IN THE ACTIVE CONFORMATION REMARK 900 RELATED ID: 4F0G RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE IN-ACTIVE CONFORMATION REMARK 900 RELATED ID: 4F1M RELATED DB: PDB REMARK 900 THE G1179S MUTANT PROTEIN BOUND TO APPCP IN THE ACTIVE CONFORMATION REMARK 900 RELATED ID: 4F1O RELATED DB: PDB REMARK 900 THE L1178T MUTANT PROTEIN BOUND TO APPCP IN THE ACTIVE CONFORMATION DBREF 4F1T A 1019 1292 UNP Q6XHB2 ROCO4_DICDI 1019 1292 SEQADV 4F1T GLY A 1006 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1T ALA A 1007 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1T MET A 1008 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1T GLY A 1009 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1T GLY A 1010 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1T SER A 1011 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1T GLU A 1012 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1T PHE A 1013 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1T PRO A 1014 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1T LYS A 1015 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1T SER A 1016 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1T ARG A 1017 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1T LEU A 1018 UNP Q6XHB2 EXPRESSION TAG SEQRES 1 A 287 GLY ALA MET GLY GLY SER GLU PHE PRO LYS SER ARG LEU SEQRES 2 A 287 PRO THR LEU ALA ASP ASN GLU ILE GLU TYR GLU LYS GLN SEQRES 3 A 287 ILE GLY LYS GLY GLY PHE GLY LEU VAL HIS LYS GLY ARG SEQRES 4 A 287 LEU VAL LYS ASP LYS SER VAL VAL ALA ILE LYS SER LEU SEQRES 5 A 287 ILE LEU GLY ASP SER GLU GLY GLU THR GLU MET ILE GLU SEQRES 6 A 287 LYS PHE GLN GLU PHE GLN ARG GLU VAL PHE ILE MET SER SEQRES 7 A 287 ASN LEU ASN HIS PRO ASN ILE VAL LYS LEU TYR GLY LEU SEQRES 8 A 287 MET HIS ASN PRO PRO ARG MET VAL MET GLU PHE VAL PRO SEQRES 9 A 287 CYS GLY ASP LEU TYR HIS ARG LEU LEU ASP LYS ALA HIS SEQRES 10 A 287 PRO ILE LYS TRP SER VAL LYS LEU ARG LEU MET LEU ASP SEQRES 11 A 287 ILE ALA LEU GLY ILE GLU TYR MET GLN ASN GLN ASN PRO SEQRES 12 A 287 PRO ILE VAL HIS ARG ASP LEU ARG SER PRO ASN ILE PHE SEQRES 13 A 287 LEU GLN SER LEU ASP GLU ASN ALA PRO VAL CYS ALA LYS SEQRES 14 A 287 VAL ALA ASP PHE GLY LEU SER GLN GLN SER VAL HIS SER SEQRES 15 A 287 VAL SER GLY LEU LEU GLY ASN PHE GLN TRP MET ALA PRO SEQRES 16 A 287 GLU THR ILE GLY ALA GLU GLU GLU SER TYR THR GLU LYS SEQRES 17 A 287 ALA ASP THR TYR SER PHE ALA MET ILE LEU TYR THR ILE SEQRES 18 A 287 LEU THR GLY GLU GLY PRO PHE ASP GLU TYR SER TYR GLY SEQRES 19 A 287 LYS ILE LYS PHE ILE ASN MET ILE ARG GLU GLU GLY LEU SEQRES 20 A 287 ARG PRO THR ILE PRO GLU ASP CYS PRO PRO ARG LEU ARG SEQRES 21 A 287 ASN VAL ILE GLU LEU CYS TRP SER GLY ASP PRO LYS LYS SEQRES 22 A 287 ARG PRO HIS PHE SER TYR ILE VAL LYS GLU LEU SER GLU SEQRES 23 A 287 LEU HET H52 A1301 22 HET H52 A1302 22 HETNAM H52 (S)-2-METHYL-1-[(4-METHYL-5-ISOQUINOLINE)SULFONYL]- HETNAM 2 H52 HOMOPIPERAZINE FORMUL 2 H52 2(C16 H21 N3 O2 S) FORMUL 4 HOH *54(H2 O) HELIX 1 1 ALA A 1022 ASN A 1024 5 3 HELIX 2 2 THR A 1066 GLU A 1070 5 5 HELIX 3 3 LYS A 1071 ASN A 1084 1 14 HELIX 4 4 ASP A 1112 LEU A 1118 1 7 HELIX 5 5 LYS A 1125 ASN A 1145 1 21 HELIX 6 6 ARG A 1156 PRO A 1158 5 3 HELIX 7 7 ASN A 1194 MET A 1198 5 5 HELIX 8 8 ALA A 1199 ILE A 1203 5 5 HELIX 9 9 GLU A 1212 GLY A 1229 1 18 HELIX 10 10 GLY A 1239 GLU A 1250 1 12 HELIX 11 11 PRO A 1261 TRP A 1272 1 12 HELIX 12 12 ASP A 1275 ARG A 1279 5 5 HELIX 13 13 HIS A 1281 GLU A 1291 1 11 SHEET 1 A 5 ILE A1026 TYR A1028 0 SHEET 2 A 5 VAL A1040 LEU A1045 -1 O ARG A1044 N GLU A1027 SHEET 3 A 5 VAL A1051 SER A1056 -1 O ILE A1054 N HIS A1041 SHEET 4 A 5 ARG A1102 GLU A1106 -1 O MET A1105 N ALA A1053 SHEET 5 A 5 LEU A1093 MET A1097 -1 N TYR A1094 O VAL A1104 SHEET 1 B 2 ILE A1160 LEU A1162 0 SHEET 2 B 2 ALA A1173 VAL A1175 -1 O LYS A1174 N PHE A1161 CISPEP 1 ASN A 1099 PRO A 1100 0 0.49 CISPEP 2 ASN A 1147 PRO A 1148 0 -7.74 SITE 1 AC1 6 VAL A1040 GLU A1106 PHE A1107 VAL A1108 SITE 2 AC1 6 PHE A1161 ASP A1177 SITE 1 AC2 4 GLN A1073 GLN A1076 LEU A1096 HIS A1098 CRYST1 43.280 43.280 352.520 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023105 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023105 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002837 0.00000