HEADER RNA BINDING PROTEIN 09-MAY-12 4F3M TITLE CRYSTAL STRUCTURE OF CRISPR-ASSOCIATED PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BH0337 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS; SOURCE 3 ORGANISM_TAXID: 272558; SOURCE 4 STRAIN: ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125; SOURCE 5 GENE: BH0337; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PSUMO KEYWDS CRISPR, FERREDOXIN FOLD, ENDORIBONUCLEASE, RNA, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.KE,K.H.NAM REVDAT 4 28-FEB-24 4F3M 1 REMARK SEQADV REVDAT 3 25-OCT-17 4F3M 1 REMARK REVDAT 2 26-SEP-12 4F3M 1 JRNL REMARK REVDAT 1 15-AUG-12 4F3M 0 JRNL AUTH K.H.NAM,C.HAITJEMA,X.LIU,F.DING,H.WANG,M.P.DELISA,A.KE JRNL TITL CAS5D PROTEIN PROCESSES PRE-CRRNA AND ASSEMBLES INTO A JRNL TITL 2 CASCADE-LIKE INTERFERENCE COMPLEX IN SUBTYPE I-C/DVULG JRNL TITL 3 CRISPR-CAS SYSTEM. JRNL REF STRUCTURE V. 20 1574 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22841292 JRNL DOI 10.1016/J.STR.2012.06.016 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 50063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2553 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2771 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3486 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 435 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.46000 REMARK 3 B22 (A**2) : -1.44000 REMARK 3 B33 (A**2) : -0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.72000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.720 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3604 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4850 ; 1.685 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 421 ; 6.346 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;32.073 ;23.370 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 595 ;14.892 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.376 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 491 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2788 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3603 ; 7.400 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 144 ;29.351 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3821 ;19.077 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4F3M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-10; 11-JUL-11; 24-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y REMARK 200 RADIATION SOURCE : CHESS; APS; APS REMARK 200 BEAMLINE : A1; 24-ID-C; 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9770; 1.00; 0.98 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL; CRYO-COOLED REMARK 200 DOUBLE CRYSTAL. SI (111); REMARK 200 CYROGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL SI(220) SIDE BOUNCE REMARK 200 MONOCHROMAMTOR REMARK 200 OPTICS : NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; ADSC QUANTUM REMARK 200 315; ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50063 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH; SINGLE REMARK 200 WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 0.8 M AMMONIUM SULFATE, PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.5K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.25450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.34350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.25450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.34350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE OLIGOMERIC STATE HAS BEEN REMARK 300 CHARACTERIZED AS MONOMER USING GEL-FILTRATION CHROMATOGRAPHY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 175 REMARK 465 GLU A 176 REMARK 465 THR A 177 REMARK 465 GLY A 178 REMARK 465 GLU A 212 REMARK 465 MET A 213 REMARK 465 ASP A 221 REMARK 465 ASN A 222 REMARK 465 VAL A 223 REMARK 465 GLN A 224 REMARK 465 SER A 225 REMARK 465 ALA A 226 REMARK 465 GLU A 227 REMARK 465 GLN A 228 REMARK 465 LEU A 229 REMARK 465 LEU A 230 REMARK 465 HIS A 231 REMARK 465 ASP A 232 REMARK 465 LEU A 233 REMARK 465 GLY A 234 REMARK 465 GLY A 235 REMARK 465 GLU A 236 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLU B 75 REMARK 465 TYR B 76 REMARK 465 GLY B 77 REMARK 465 GLY B 78 REMARK 465 GLY B 79 REMARK 465 ASN B 80 REMARK 465 THR B 81 REMARK 465 PRO B 174 REMARK 465 ASP B 175 REMARK 465 GLU B 176 REMARK 465 THR B 177 REMARK 465 GLY B 178 REMARK 465 GLN B 179 REMARK 465 GLU B 212 REMARK 465 MET B 213 REMARK 465 PRO B 220 REMARK 465 ASP B 221 REMARK 465 ASN B 222 REMARK 465 GLY B 235 REMARK 465 GLU B 236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 98 CG HIS A 98 CD2 0.058 REMARK 500 HIS A 163 CG HIS A 163 CD2 0.055 REMARK 500 TRP A 187 CE2 TRP A 187 CD2 0.081 REMARK 500 TRP B 47 CE2 TRP B 47 CD2 0.081 REMARK 500 HIS B 98 CG HIS B 98 CD2 0.061 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 183 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 3 13.84 -143.31 REMARK 500 THR A 81 -177.39 -64.41 REMARK 500 ASP A 90 70.57 57.59 REMARK 500 ARG A 105 73.71 -119.17 REMARK 500 LEU A 135 72.49 -100.32 REMARK 500 CYS A 140 67.53 -114.56 REMARK 500 GLU B 26 -149.76 -116.30 REMARK 500 ASP B 90 73.39 62.01 REMARK 500 CYS B 140 60.76 -118.51 REMARK 500 PRO B 215 -25.48 -32.48 REMARK 500 LEU B 233 -161.16 -162.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 23 GLY A 24 -147.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 305 DBREF 4F3M A 1 236 UNP Q9KFY3 Q9KFY3_BACHD 1 236 DBREF 4F3M B 1 236 UNP Q9KFY3 Q9KFY3_BACHD 1 236 SEQADV 4F3M GLY A -1 UNP Q9KFY3 EXPRESSION TAG SEQADV 4F3M SER A 0 UNP Q9KFY3 EXPRESSION TAG SEQADV 4F3M GLY B -1 UNP Q9KFY3 EXPRESSION TAG SEQADV 4F3M SER B 0 UNP Q9KFY3 EXPRESSION TAG SEQRES 1 A 238 GLY SER MET ARG ASN GLU VAL GLN PHE GLU LEU PHE GLY SEQRES 2 A 238 ASP TYR ALA LEU PHE THR ASP PRO LEU THR LYS ILE GLY SEQRES 3 A 238 GLY GLU LYS LEU SER TYR SER VAL PRO THR TYR GLN ALA SEQRES 4 A 238 LEU LYS GLY ILE ALA GLU SER ILE TYR TRP LYS PRO THR SEQRES 5 A 238 ILE VAL PHE VAL ILE ASP GLU LEU ARG VAL MET LYS PRO SEQRES 6 A 238 ILE GLN MET GLU SER LYS GLY VAL ARG PRO ILE GLU TYR SEQRES 7 A 238 GLY GLY GLY ASN THR LEU ALA HIS TYR THR TYR LEU LYS SEQRES 8 A 238 ASP VAL HIS TYR GLN VAL LYS ALA HIS PHE GLU PHE ASN SEQRES 9 A 238 LEU HIS ARG PRO ASP LEU ALA PHE ASP ARG ASN GLU GLY SEQRES 10 A 238 LYS HIS TYR SER ILE LEU GLN ARG SER LEU LYS ALA GLY SEQRES 11 A 238 GLY ARG ARG ASP ILE PHE LEU GLY ALA ARG GLU CYS GLN SEQRES 12 A 238 GLY TYR VAL ALA PRO CYS GLU PHE GLY SER GLY ASP GLY SEQRES 13 A 238 PHE TYR ASP GLY GLN GLY LYS TYR HIS LEU GLY THR MET SEQRES 14 A 238 VAL HIS GLY PHE ASN TYR PRO ASP GLU THR GLY GLN HIS SEQRES 15 A 238 GLN LEU ASP VAL ARG LEU TRP SER ALA VAL MET GLU ASN SEQRES 16 A 238 GLY TYR ILE GLN PHE PRO ARG PRO GLU ASP CYS PRO ILE SEQRES 17 A 238 VAL ARG PRO VAL LYS GLU MET GLU PRO LYS ILE PHE ASN SEQRES 18 A 238 PRO ASP ASN VAL GLN SER ALA GLU GLN LEU LEU HIS ASP SEQRES 19 A 238 LEU GLY GLY GLU SEQRES 1 B 238 GLY SER MET ARG ASN GLU VAL GLN PHE GLU LEU PHE GLY SEQRES 2 B 238 ASP TYR ALA LEU PHE THR ASP PRO LEU THR LYS ILE GLY SEQRES 3 B 238 GLY GLU LYS LEU SER TYR SER VAL PRO THR TYR GLN ALA SEQRES 4 B 238 LEU LYS GLY ILE ALA GLU SER ILE TYR TRP LYS PRO THR SEQRES 5 B 238 ILE VAL PHE VAL ILE ASP GLU LEU ARG VAL MET LYS PRO SEQRES 6 B 238 ILE GLN MET GLU SER LYS GLY VAL ARG PRO ILE GLU TYR SEQRES 7 B 238 GLY GLY GLY ASN THR LEU ALA HIS TYR THR TYR LEU LYS SEQRES 8 B 238 ASP VAL HIS TYR GLN VAL LYS ALA HIS PHE GLU PHE ASN SEQRES 9 B 238 LEU HIS ARG PRO ASP LEU ALA PHE ASP ARG ASN GLU GLY SEQRES 10 B 238 LYS HIS TYR SER ILE LEU GLN ARG SER LEU LYS ALA GLY SEQRES 11 B 238 GLY ARG ARG ASP ILE PHE LEU GLY ALA ARG GLU CYS GLN SEQRES 12 B 238 GLY TYR VAL ALA PRO CYS GLU PHE GLY SER GLY ASP GLY SEQRES 13 B 238 PHE TYR ASP GLY GLN GLY LYS TYR HIS LEU GLY THR MET SEQRES 14 B 238 VAL HIS GLY PHE ASN TYR PRO ASP GLU THR GLY GLN HIS SEQRES 15 B 238 GLN LEU ASP VAL ARG LEU TRP SER ALA VAL MET GLU ASN SEQRES 16 B 238 GLY TYR ILE GLN PHE PRO ARG PRO GLU ASP CYS PRO ILE SEQRES 17 B 238 VAL ARG PRO VAL LYS GLU MET GLU PRO LYS ILE PHE ASN SEQRES 18 B 238 PRO ASP ASN VAL GLN SER ALA GLU GLN LEU LEU HIS ASP SEQRES 19 B 238 LEU GLY GLY GLU HET EDO A 301 4 HET SO4 A 302 5 HET EDO B 301 4 HET EDO B 302 4 HET EDO B 303 4 HET EDO B 304 4 HET EDO B 305 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 6(C2 H6 O2) FORMUL 4 SO4 O4 S 2- FORMUL 10 HOH *435(H2 O) HELIX 1 1 ASP A 18 LYS A 22 5 5 HELIX 2 2 THR A 34 TYR A 46 1 13 HELIX 3 3 ARG A 105 ARG A 112 5 8 HELIX 4 4 ASN A 113 ALA A 127 1 15 HELIX 5 5 ARG A 200 CYS A 204 5 5 HELIX 6 6 GLU A 214 ASN A 219 5 6 HELIX 7 7 ASP B 18 GLY B 25 5 8 HELIX 8 8 THR B 34 TYR B 46 1 13 HELIX 9 9 ARG B 105 ARG B 112 5 8 HELIX 10 10 ASN B 113 ALA B 127 1 15 HELIX 11 11 ARG B 200 CYS B 204 5 5 HELIX 12 12 GLU B 214 PHE B 218 5 5 SHEET 1 A 4 LYS A 27 LEU A 28 0 SHEET 2 A 4 ALA A 83 PHE A 101 1 O THR A 86 N LYS A 27 SHEET 3 A 4 ILE A 51 VAL A 60 -1 N GLU A 57 O LYS A 96 SHEET 4 A 4 TYR A 195 GLN A 197 -1 O ILE A 196 N LEU A 58 SHEET 1 B 5 TYR A 143 PRO A 146 0 SHEET 2 B 5 GLU A 4 ALA A 14 -1 N GLU A 8 O ALA A 145 SHEET 3 B 5 ALA A 83 PHE A 101 -1 O VAL A 95 N PHE A 7 SHEET 4 B 5 MET A 66 PRO A 73 -1 N GLU A 67 O TYR A 87 SHEET 5 B 5 ALA B 226 GLN B 228 -1 O GLU B 227 N ARG A 72 SHEET 1 C 3 LYS A 161 ASN A 172 0 SHEET 2 C 3 ASP A 183 GLU A 192 -1 O ARG A 185 N HIS A 169 SHEET 3 C 3 ILE A 206 PRO A 209 -1 O ARG A 208 N VAL A 184 SHEET 1 D 5 LYS B 27 LEU B 28 0 SHEET 2 D 5 ALA B 83 PHE B 101 1 O THR B 86 N LYS B 27 SHEET 3 D 5 GLU B 4 ALA B 14 -1 N PHE B 7 O VAL B 95 SHEET 4 D 5 GLN B 141 PRO B 146 -1 O ALA B 145 N GLU B 8 SHEET 5 D 5 ILE B 133 PHE B 134 -1 N ILE B 133 O GLY B 142 SHEET 1 E 4 MET B 66 VAL B 71 0 SHEET 2 E 4 ALA B 83 PHE B 101 -1 O TYR B 87 N GLU B 67 SHEET 3 E 4 ILE B 51 VAL B 60 -1 N VAL B 54 O HIS B 98 SHEET 4 E 4 TYR B 195 GLN B 197 -1 O ILE B 196 N LEU B 58 SHEET 1 F 3 LYS B 161 ASN B 172 0 SHEET 2 F 3 ASP B 183 GLU B 192 -1 O MET B 191 N TYR B 162 SHEET 3 F 3 ILE B 206 PRO B 209 -1 O ILE B 206 N LEU B 186 CISPEP 1 THR A 81 LEU A 82 0 12.31 SITE 1 AC1 6 PHE A 110 ARG A 112 LYS A 126 PRO A 146 SITE 2 AC1 6 HOH A 452 HOH A 502 SITE 1 AC2 5 THR A 17 LYS A 22 LYS A 27 HOH A 467 SITE 2 AC2 5 GLN B 224 SITE 1 AC3 6 ALA B 109 PHE B 110 ARG B 112 LYS B 126 SITE 2 AC3 6 HOH B 422 HOH B 511 SITE 1 AC4 3 ARG B 72 PRO B 73 GLU B 139 SITE 1 AC5 3 LYS B 39 GLU B 43 TRP B 47 SITE 1 AC6 4 ARG A 112 GLU B 227 GLN B 228 HOH B 480 SITE 1 AC7 5 TYR A 13 LYS A 69 GLU A 139 GLN B 228 SITE 2 AC7 5 HOH B 534 CRYST1 86.509 46.687 129.030 90.00 104.01 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011559 0.000000 0.002884 0.00000 SCALE2 0.000000 0.021419 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007988 0.00000