HEADER TRANSFERASE/DNA 09-MAY-12 4F3O TITLE DNA POLYMERASE I LARGE FRAGMENT COMPLEX 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 287-878; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(2DT))-3'); COMPND 10 CHAIN: B, E; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: DNA PRIMER STRAND; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*C*AP*TP*GP*AP*GP*AP*GP*TP*CP*AP*GP*G)-3'); COMPND 15 CHAIN: C, F; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: DNA TEMPLATE STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 3 ORGANISM_TAXID: 235909; SOURCE 4 GENE: GK2730, POLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS DNA POLYMERASE I, PROTEIN-DNA COMPLEX, CLOSED FORM, TRANSFERASE-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG,L.S.BEESE REVDAT 2 13-SEP-23 4F3O 1 REMARK SEQADV LINK REVDAT 1 24-JUL-13 4F3O 0 JRNL AUTH W.WANG,H.W.HELLINGA,L.S.BEESE JRNL TITL STRUCTURES OF A HIGH-FIDELITY DNA POLYMERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.WANG,H.W.HELLINGA,L.S.BEESE REMARK 1 TITL STRUCTURAL EVIDENCE FOR THE RARE TAUTOMER HYPOTHESIS OF REMARK 1 TITL 2 SPONTANEOUS MUTAGENESIS. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 108 17644 2011 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 22006298 REMARK 1 DOI 10.1073/PNAS.1114496108 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1026 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.3 REMARK 3 NUMBER OF REFLECTIONS : 191796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.580 REMARK 3 FREE R VALUE TEST SET COUNT : 8791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 79.6673 - 4.8780 0.99 7203 370 0.2005 0.1987 REMARK 3 2 4.8780 - 3.8718 1.00 6950 365 0.1513 0.1806 REMARK 3 3 3.8718 - 3.3824 1.00 6918 345 0.1640 0.1866 REMARK 3 4 3.3824 - 3.0731 1.00 6871 356 0.1745 0.1977 REMARK 3 5 3.0731 - 2.8528 1.00 6844 331 0.1858 0.2198 REMARK 3 6 2.8528 - 2.6846 1.00 6862 307 0.1851 0.2195 REMARK 3 7 2.6846 - 2.5502 1.00 6898 286 0.1766 0.2053 REMARK 3 8 2.5502 - 2.4392 0.99 6834 280 0.1681 0.1848 REMARK 3 9 2.4392 - 2.3453 0.99 6826 273 0.1692 0.1926 REMARK 3 10 2.3453 - 2.2643 0.96 5705 215 0.1677 0.2016 REMARK 3 11 2.2643 - 2.1935 0.88 2901 151 0.1673 0.1910 REMARK 3 12 2.1935 - 2.1308 0.99 6775 271 0.1688 0.1962 REMARK 3 13 2.1308 - 2.0747 0.99 6835 271 0.1688 0.1882 REMARK 3 14 2.0747 - 2.0241 0.99 6775 239 0.1691 0.1750 REMARK 3 15 2.0241 - 1.9781 0.98 6767 256 0.1779 0.2130 REMARK 3 16 1.9781 - 1.9360 0.91 5010 263 0.1834 0.2319 REMARK 3 17 1.8972 - 1.8614 0.83 5187 273 0.1859 0.2171 REMARK 3 18 1.8614 - 1.8282 0.96 6464 340 0.1870 0.2248 REMARK 3 19 1.8282 - 1.7972 0.96 6482 342 0.1874 0.2263 REMARK 3 20 1.7972 - 1.7682 0.95 6417 337 0.1891 0.2142 REMARK 3 21 1.7682 - 1.7410 0.95 6423 338 0.2009 0.2199 REMARK 3 22 1.7410 - 1.7154 0.94 6358 335 0.2069 0.2446 REMARK 3 23 1.7154 - 1.6912 0.94 6324 333 0.2112 0.2454 REMARK 3 24 1.6912 - 1.6684 0.93 6254 329 0.2107 0.2424 REMARK 3 25 1.6684 - 1.6467 0.92 6178 325 0.2171 0.2490 REMARK 3 26 1.6467 - 1.6261 0.91 6161 324 0.2223 0.2392 REMARK 3 27 1.6261 - 1.6065 0.89 5999 316 0.2265 0.2589 REMARK 3 28 1.6065 - 1.5878 0.89 5984 315 0.2379 0.2388 REMARK 3 29 1.5878 - 1.5700 0.86 5800 305 0.2580 0.2784 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 10418 REMARK 3 ANGLE : 1.357 14282 REMARK 3 CHIRALITY : 0.076 1599 REMARK 3 PLANARITY : 0.007 1700 REMARK 3 DIHEDRAL : 15.236 4040 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 297:467) REMARK 3 ORIGIN FOR THE GROUP (A): 117.7938 -57.3868 22.6268 REMARK 3 T TENSOR REMARK 3 T11: 0.4526 T22: 0.3371 REMARK 3 T33: 0.2698 T12: 0.0689 REMARK 3 T13: 0.1385 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.7851 L22: 1.9075 REMARK 3 L33: 1.2684 L12: 1.0143 REMARK 3 L13: -0.2699 L23: -0.2062 REMARK 3 S TENSOR REMARK 3 S11: -0.2143 S12: 0.3901 S13: -0.3013 REMARK 3 S21: -0.4539 S22: 0.1230 S23: -0.1399 REMARK 3 S31: 0.3451 S32: 0.1246 S33: 0.0868 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 468:630) REMARK 3 ORIGIN FOR THE GROUP (A): 111.4563 -31.1492 46.5685 REMARK 3 T TENSOR REMARK 3 T11: 0.2123 T22: 0.1661 REMARK 3 T33: 0.1513 T12: -0.0628 REMARK 3 T13: 0.0032 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.7994 L22: 2.2374 REMARK 3 L33: 1.3643 L12: -0.6727 REMARK 3 L13: -0.0643 L23: 0.0360 REMARK 3 S TENSOR REMARK 3 S11: -0.0899 S12: -0.0844 S13: 0.0316 REMARK 3 S21: 0.2545 S22: 0.0032 S23: 0.0823 REMARK 3 S31: -0.1275 S32: 0.1402 S33: 0.0830 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 631:875) REMARK 3 ORIGIN FOR THE GROUP (A): 131.4998 -28.0065 37.7497 REMARK 3 T TENSOR REMARK 3 T11: 0.3265 T22: 0.6393 REMARK 3 T33: 0.3810 T12: -0.1540 REMARK 3 T13: -0.0104 T23: 0.0507 REMARK 3 L TENSOR REMARK 3 L11: 0.4712 L22: 1.6318 REMARK 3 L33: 2.6154 L12: 0.1097 REMARK 3 L13: -0.5491 L23: -0.3124 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: -0.2723 S13: 0.1219 REMARK 3 S21: 0.1409 S22: -0.1548 S23: -0.5687 REMARK 3 S31: -0.5541 S32: 0.8658 S33: 0.1186 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 298:467) REMARK 3 ORIGIN FOR THE GROUP (A): 138.3239 -47.8477 -9.4905 REMARK 3 T TENSOR REMARK 3 T11: 0.0925 T22: 0.0936 REMARK 3 T33: 0.0881 T12: 0.0276 REMARK 3 T13: -0.0081 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.6462 L22: 1.7505 REMARK 3 L33: 1.4760 L12: -0.1180 REMARK 3 L13: 0.4431 L23: 0.5421 REMARK 3 S TENSOR REMARK 3 S11: 0.0431 S12: 0.0418 S13: -0.1244 REMARK 3 S21: -0.0495 S22: 0.0076 S23: -0.0853 REMARK 3 S31: 0.1367 S32: 0.0869 S33: -0.0428 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 468:604) REMARK 3 ORIGIN FOR THE GROUP (A): 122.6348 -20.4868 -30.6283 REMARK 3 T TENSOR REMARK 3 T11: 0.2387 T22: 0.1547 REMARK 3 T33: 0.1378 T12: 0.0015 REMARK 3 T13: 0.0002 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.5216 L22: 1.3515 REMARK 3 L33: 1.1285 L12: 0.2534 REMARK 3 L13: -0.0839 L23: -0.5435 REMARK 3 S TENSOR REMARK 3 S11: -0.0605 S12: 0.1816 S13: 0.1108 REMARK 3 S21: -0.3214 S22: 0.1612 S23: 0.1192 REMARK 3 S31: -0.1867 S32: -0.0603 S33: -0.1034 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 605:876) REMARK 3 ORIGIN FOR THE GROUP (A): 118.3793 -18.2895 -8.7147 REMARK 3 T TENSOR REMARK 3 T11: 0.0750 T22: 0.1019 REMARK 3 T33: 0.1242 T12: 0.0091 REMARK 3 T13: 0.0096 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.9797 L22: 1.1190 REMARK 3 L33: 1.1399 L12: -0.1105 REMARK 3 L13: -0.0950 L23: 0.5721 REMARK 3 S TENSOR REMARK 3 S11: 0.0513 S12: 0.1108 S13: 0.1985 REMARK 3 S21: -0.1036 S22: -0.0486 S23: 0.0738 REMARK 3 S31: -0.1700 S32: -0.0597 S33: -0.0024 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 21:29) REMARK 3 ORIGIN FOR THE GROUP (A): 108.9703 -28.2009 40.0404 REMARK 3 T TENSOR REMARK 3 T11: 0.4015 T22: 0.1453 REMARK 3 T33: 0.2437 T12: -0.0722 REMARK 3 T13: -0.0962 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 6.0430 L22: 2.2921 REMARK 3 L33: 4.6638 L12: -0.4021 REMARK 3 L13: 0.2996 L23: -0.0560 REMARK 3 S TENSOR REMARK 3 S11: -0.2425 S12: 0.1384 S13: -0.1296 REMARK 3 S21: -0.7113 S22: 0.0410 S23: 0.3875 REMARK 3 S31: -0.2805 S32: -0.2207 S33: 0.1911 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 1:12) REMARK 3 ORIGIN FOR THE GROUP (A): 110.6011 -27.1010 37.1051 REMARK 3 T TENSOR REMARK 3 T11: 0.2621 T22: 0.2120 REMARK 3 T33: 0.2694 T12: -0.0318 REMARK 3 T13: -0.0610 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 4.0791 L22: 3.0443 REMARK 3 L33: 2.0999 L12: 0.9771 REMARK 3 L13: -1.3044 L23: 0.5742 REMARK 3 S TENSOR REMARK 3 S11: -0.0974 S12: 0.2487 S13: 0.6534 REMARK 3 S21: -0.4004 S22: 0.0516 S23: 0.5122 REMARK 3 S31: -0.3119 S32: -0.0326 S33: 0.0364 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'E' AND (RESSEQ 21:29) REMARK 3 ORIGIN FOR THE GROUP (A): 129.8098 -18.4697 -26.8714 REMARK 3 T TENSOR REMARK 3 T11: 0.1659 T22: 0.1525 REMARK 3 T33: 0.2326 T12: 0.0222 REMARK 3 T13: 0.0227 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 4.1148 L22: 2.2649 REMARK 3 L33: 5.5084 L12: 1.5796 REMARK 3 L13: -1.6385 L23: -0.5823 REMARK 3 S TENSOR REMARK 3 S11: -0.0797 S12: 0.3228 S13: 0.0118 REMARK 3 S21: -0.1753 S22: 0.0763 S23: -0.4439 REMARK 3 S31: -0.0346 S32: 0.3613 S33: -0.0269 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'F' AND (RESSEQ 1:12) REMARK 3 ORIGIN FOR THE GROUP (A): 131.3157 -17.4136 -23.8788 REMARK 3 T TENSOR REMARK 3 T11: 0.2139 T22: 0.1825 REMARK 3 T33: 0.1763 T12: -0.0252 REMARK 3 T13: 0.0993 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.1297 L22: 0.4869 REMARK 3 L33: 2.3899 L12: -0.6122 REMARK 3 L13: -0.7538 L23: -0.1126 REMARK 3 S TENSOR REMARK 3 S11: 0.1727 S12: 0.1870 S13: 0.2160 REMARK 3 S21: -0.4814 S22: 0.1192 S23: -0.4299 REMARK 3 S31: -0.3854 S32: 0.2051 S33: -0.2310 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4F3O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1158 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 199455 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2HVI WITH INSERTION SITE BASE PAIR, REMARK 200 METAL IONS, AND PROTEIN RESIDUES 681-721 DELETED REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 49%-51% SATURATED AMMONIUM SULFATE, REMARK 280 2.5% MPD, 10MM MNSO4, 100MM MES, PH 5.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.91500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.05500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.66500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.05500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.91500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.66500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 285 REMARK 465 GLU A 286 REMARK 465 SER A 287 REMARK 465 PRO A 288 REMARK 465 SER A 289 REMARK 465 SER A 290 REMARK 465 GLU A 291 REMARK 465 GLU A 292 REMARK 465 GLU A 293 REMARK 465 LYS A 294 REMARK 465 PRO A 295 REMARK 465 LEU A 296 REMARK 465 MET A 687 REMARK 465 ASP A 688 REMARK 465 ILE A 689 REMARK 465 PHE A 690 REMARK 465 GLN A 691 REMARK 465 VAL A 692 REMARK 465 SER A 693 REMARK 465 GLU A 694 REMARK 465 ASP A 695 REMARK 465 GLU A 696 REMARK 465 VAL A 697 REMARK 465 THR A 698 REMARK 465 PRO A 699 REMARK 465 LYS A 876 REMARK 465 MET D 285 REMARK 465 GLU D 286 REMARK 465 SER D 287 REMARK 465 PRO D 288 REMARK 465 SER D 289 REMARK 465 SER D 290 REMARK 465 GLU D 291 REMARK 465 GLU D 292 REMARK 465 GLU D 293 REMARK 465 LYS D 294 REMARK 465 PRO D 295 REMARK 465 LEU D 296 REMARK 465 ALA D 297 REMARK 465 DC C 0 REMARK 465 DC F 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA C 1 P OP1 OP2 REMARK 470 DA F 1 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH E 217 O HOH E 232 1.80 REMARK 500 O HOH A 1175 O HOH A 1216 1.83 REMARK 500 OP1 DG F 11 O HOH F 149 1.84 REMARK 500 O HOH D 1595 O HOH D 1632 1.88 REMARK 500 O HOH A 1278 O HOH A 1348 1.88 REMARK 500 O HOH D 1573 O HOH D 1695 1.92 REMARK 500 NH2 ARG D 702 O2G D3T D 901 1.96 REMARK 500 O HOH D 1232 O HOH D 1355 1.96 REMARK 500 O HOH B 226 O HOH C 130 1.97 REMARK 500 O HOH A 1262 O HOH A 1313 1.98 REMARK 500 OD1 ASN A 607 O HOH A 1172 1.99 REMARK 500 O HOH C 159 O HOH C 160 2.00 REMARK 500 O HOH D 1353 O HOH D 1600 2.03 REMARK 500 O HOH D 1422 O HOH D 1697 2.03 REMARK 500 O HOH D 1629 O HOH D 1670 2.03 REMARK 500 O HOH D 1176 O HOH E 226 2.04 REMARK 500 O HOH A 1328 O HOH A 1349 2.04 REMARK 500 O HOH D 1201 O HOH D 1441 2.04 REMARK 500 O HOH D 1407 O HOH D 1505 2.05 REMARK 500 O HOH D 1347 O HOH D 1423 2.07 REMARK 500 O HOH D 1088 O HOH D 1350 2.07 REMARK 500 O HOH A 1309 O HOH D 1526 2.08 REMARK 500 O HOH A 1379 O HOH A 1380 2.09 REMARK 500 O HOH D 1188 O HOH D 1358 2.09 REMARK 500 O HOH D 1330 O HOH D 1379 2.10 REMARK 500 OD1 ASP A 408 O HOH A 1116 2.11 REMARK 500 O HOH D 1751 O HOH D 1753 2.12 REMARK 500 O HOH A 1103 O HOH D 1606 2.12 REMARK 500 O HOH D 1725 O HOH D 1727 2.12 REMARK 500 O HOH D 1372 O HOH D 1532 2.12 REMARK 500 OD1 ASP D 408 O HOH D 1174 2.13 REMARK 500 O HOH D 1287 O HOH D 1601 2.13 REMARK 500 O HOH D 1521 O HOH D 1621 2.13 REMARK 500 O HOH A 1284 O HOH A 1291 2.14 REMARK 500 O1 SO4 D 903 O HOH D 1610 2.15 REMARK 500 O MET A 311 O HOH A 1134 2.16 REMARK 500 O HOH D 1672 O HOH D 1676 2.18 REMARK 500 O HOH A 1356 O HOH A 1370 2.18 REMARK 500 OD1 ASP D 305 O HOH D 1564 2.18 REMARK 500 O HOH D 1279 O HOH D 1584 2.18 REMARK 500 O HOH D 1347 O HOH D 1527 2.18 REMARK 500 NH1 ARG A 676 O HOH A 1141 2.19 REMARK 500 NH2 ARG A 459 O HOH A 1070 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 1161 O HOH D 1195 4445 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 634 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG D 634 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 DC B 21 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT B 23 O4' - C1' - N1 ANGL. DEV. = -7.1 DEGREES REMARK 500 DC B 26 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT B 27 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DT B 27 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT C 2 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT C 8 O4' - C1' - N1 ANGL. DEV. = -6.6 DEGREES REMARK 500 DC E 22 O4' - C1' - N1 ANGL. DEV. = -4.5 DEGREES REMARK 500 DT E 23 O4' - C1' - N1 ANGL. DEV. = -4.6 DEGREES REMARK 500 DA E 25 O5' - P - OP2 ANGL. DEV. = -7.7 DEGREES REMARK 500 DA E 25 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC E 26 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 DT E 27 C4' - C3' - C2' ANGL. DEV. = -4.7 DEGREES REMARK 500 DT E 27 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT E 27 N3 - C4 - O4 ANGL. DEV. = 5.3 DEGREES REMARK 500 DT F 2 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 DG F 3 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA F 4 O4' - C4' - C3' ANGL. DEV. = 3.8 DEGREES REMARK 500 DT F 8 O4' - C1' - N1 ANGL. DEV. = -6.7 DEGREES REMARK 500 DG F 11 O4' - C1' - N9 ANGL. DEV. = -4.9 DEGREES REMARK 500 DG F 12 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 372 63.94 61.86 REMARK 500 ASP A 402 101.78 -162.84 REMARK 500 ASP A 408 17.03 -142.49 REMARK 500 ALA A 421 39.98 -79.02 REMARK 500 ILE A 588 -70.24 -106.29 REMARK 500 LEU A 610 -51.30 -121.93 REMARK 500 ILE A 628 -25.18 -146.89 REMARK 500 ASN A 726 23.10 49.48 REMARK 500 HIS A 829 -52.31 71.00 REMARK 500 LEU A 858 -168.51 -107.44 REMARK 500 ASP D 372 61.70 61.89 REMARK 500 ASP D 402 96.04 -170.48 REMARK 500 ALA D 421 46.64 -89.06 REMARK 500 LEU D 477 -66.43 -120.48 REMARK 500 GLU D 540 -60.43 -107.78 REMARK 500 ILE D 588 -66.38 -108.37 REMARK 500 LEU D 610 -53.14 -123.80 REMARK 500 ILE D 628 -25.22 -144.74 REMARK 500 GLN D 691 57.28 39.74 REMARK 500 HIS D 768 18.98 84.01 REMARK 500 HIS D 829 -52.80 71.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 904 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR D 654 O REMARK 620 2 ASP D 830 OD2 112.4 REMARK 620 3 D3T D 901 O2B 111.4 113.8 REMARK 620 4 HOH D1034 O 92.4 62.9 68.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D3T D 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 904 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EZ6 RELATED DB: PDB REMARK 900 RELATED ID: 4F2R RELATED DB: PDB REMARK 900 RELATED ID: 4F2S RELATED DB: PDB REMARK 900 RELATED ID: 4EZ9 RELATED DB: PDB REMARK 900 RELATED ID: 4F4K RELATED DB: PDB REMARK 900 RELATED ID: 4F8R RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE PROTEIN WAS ISOLATED FROM A STRAIN OF REMARK 999 GEOBACILLUS SPECIES WHOSE SEQUENCE IS NOT AVAILABLE IN THE UNIPROT REMARK 999 DATABASE. IT DIFFERS FROM UNP Q5KWC1 BY THIS SINGLE RESIDUE DBREF 4F3O A 285 876 UNP Q5KWC1 Q5KWC1_GEOKA 287 878 DBREF 4F3O D 285 876 UNP Q5KWC1 Q5KWC1_GEOKA 287 878 DBREF 4F3O B 21 29 PDB 4F3O 4F3O 21 29 DBREF 4F3O E 21 29 PDB 4F3O 4F3O 21 29 DBREF 4F3O C 0 12 PDB 4F3O 4F3O 0 12 DBREF 4F3O F 0 12 PDB 4F3O 4F3O 0 12 SEQADV 4F3O ALA A 598 UNP Q5KWC1 ASP 600 ENGINEERED MUTATION SEQADV 4F3O TYR A 710 UNP Q5KWC1 PHE 712 ENGINEERED MUTATION SEQADV 4F3O HIS A 823 UNP Q5KWC1 ARG 825 SEE REMARK 999 SEQADV 4F3O ALA D 598 UNP Q5KWC1 ASP 600 ENGINEERED MUTATION SEQADV 4F3O TYR D 710 UNP Q5KWC1 PHE 712 ENGINEERED MUTATION SEQADV 4F3O HIS D 823 UNP Q5KWC1 ARG 825 SEE REMARK 999 SEQRES 1 A 592 MET GLU SER PRO SER SER GLU GLU GLU LYS PRO LEU ALA SEQRES 2 A 592 LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU GLU SEQRES 3 A 592 MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL VAL SEQRES 4 A 592 GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE ALA SEQRES 5 A 592 VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO GLU SEQRES 6 A 592 THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU GLY SEQRES 7 A 592 ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS ARG SEQRES 8 A 592 ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU CYS SEQRES 9 A 592 GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU LEU SEQRES 10 A 592 ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA ALA SEQRES 11 A 592 LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU ALA SEQRES 12 A 592 VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP GLU SEQRES 13 A 592 PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA ALA SEQRES 14 A 592 ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU ARG SEQRES 15 A 592 ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU GLN SEQRES 16 A 592 PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA GLY SEQRES 17 A 592 VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY LYS SEQRES 18 A 592 GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG ILE SEQRES 19 A 592 TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER PRO SEQRES 20 A 592 LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN LEU SEQRES 21 A 592 PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SER SEQRES 22 A 592 ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU ILE SEQRES 23 A 592 VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS LEU SEQRES 24 A 592 GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL ARG SEQRES 25 A 592 PRO ALA THR LYS LYS VAL HIS THR ILE PHE ASN GLN ALA SEQRES 26 A 592 LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO ASN SEQRES 27 A 592 LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG LYS SEQRES 28 A 592 ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP LEU SEQRES 29 A 592 ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG VAL SEQRES 30 A 592 LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU ALA SEQRES 31 A 592 PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA MET SEQRES 32 A 592 ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO ASN SEQRES 33 A 592 MET ARG ARG GLN ALA LYS ALA VAL ASN TYR GLY ILE VAL SEQRES 34 A 592 TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU ASN SEQRES 35 A 592 ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG TYR SEQRES 36 A 592 PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU ASN SEQRES 37 A 592 ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR THR SEQRES 38 A 592 LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SER SEQRES 39 A 592 ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET ALA SEQRES 40 A 592 MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE ILE SEQRES 41 A 592 LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS GLU SEQRES 42 A 592 GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS ASP SEQRES 43 A 592 GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU ARG SEQRES 44 A 592 LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA VAL SEQRES 45 A 592 THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR GLY SEQRES 46 A 592 SER THR TRP TYR ASP ALA LYS SEQRES 1 D 592 MET GLU SER PRO SER SER GLU GLU GLU LYS PRO LEU ALA SEQRES 2 D 592 LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU GLU SEQRES 3 D 592 MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL VAL SEQRES 4 D 592 GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE ALA SEQRES 5 D 592 VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO GLU SEQRES 6 D 592 THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU GLY SEQRES 7 D 592 ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS ARG SEQRES 8 D 592 ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU CYS SEQRES 9 D 592 GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU LEU SEQRES 10 D 592 ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA ALA SEQRES 11 D 592 LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU ALA SEQRES 12 D 592 VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP GLU SEQRES 13 D 592 PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA ALA SEQRES 14 D 592 ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU ARG SEQRES 15 D 592 ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU GLN SEQRES 16 D 592 PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA GLY SEQRES 17 D 592 VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY LYS SEQRES 18 D 592 GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG ILE SEQRES 19 D 592 TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER PRO SEQRES 20 D 592 LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN LEU SEQRES 21 D 592 PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SER SEQRES 22 D 592 ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU ILE SEQRES 23 D 592 VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS LEU SEQRES 24 D 592 GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL ARG SEQRES 25 D 592 PRO ALA THR LYS LYS VAL HIS THR ILE PHE ASN GLN ALA SEQRES 26 D 592 LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO ASN SEQRES 27 D 592 LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG LYS SEQRES 28 D 592 ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP LEU SEQRES 29 D 592 ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG VAL SEQRES 30 D 592 LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU ALA SEQRES 31 D 592 PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA MET SEQRES 32 D 592 ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO ASN SEQRES 33 D 592 MET ARG ARG GLN ALA LYS ALA VAL ASN TYR GLY ILE VAL SEQRES 34 D 592 TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU ASN SEQRES 35 D 592 ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG TYR SEQRES 36 D 592 PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU ASN SEQRES 37 D 592 ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR THR SEQRES 38 D 592 LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SER SEQRES 39 D 592 ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET ALA SEQRES 40 D 592 MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE ILE SEQRES 41 D 592 LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS GLU SEQRES 42 D 592 GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS ASP SEQRES 43 D 592 GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU ARG SEQRES 44 D 592 LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA VAL SEQRES 45 D 592 THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR GLY SEQRES 46 D 592 SER THR TRP TYR ASP ALA LYS SEQRES 1 B 9 DC DC DT DG DA DC DT DC 2DT SEQRES 1 C 13 DC DA DT DG DA DG DA DG DT DC DA DG DG SEQRES 1 E 9 DC DC DT DG DA DC DT DC 2DT SEQRES 1 F 13 DC DA DT DG DA DG DA DG DT DC DA DG DG MODRES 4F3O 2DT B 29 DT 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE MODRES 4F3O 2DT E 29 DT 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE HET 2DT B 29 30 HET 2DT E 29 30 HET SO4 A 901 5 HET SO4 A 902 5 HET MPD A 903 22 HET MN A 904 1 HET D3T D 901 28 HET SO4 D 902 5 HET SO4 D 903 5 HET MN D 904 1 HETNAM 2DT 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE HETNAM SO4 SULFATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MN MANGANESE (II) ION HETNAM D3T 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE HETSYN 2DT 2',3'-DIDEOXYTHYMIDINE-5'-MONOPHOSPHATE FORMUL 3 2DT 2(C10 H15 N2 O7 P) FORMUL 7 SO4 4(O4 S 2-) FORMUL 9 MPD C6 H14 O2 FORMUL 10 MN 2(MN 2+) FORMUL 11 D3T C10 H17 N2 O13 P3 FORMUL 15 HOH *1365(H2 O) HELIX 1 1 THR A 308 LEU A 312 5 5 HELIX 2 2 ARG A 347 LEU A 352 1 6 HELIX 3 3 ASP A 354 ASP A 363 1 10 HELIX 4 4 ASP A 372 LYS A 383 1 12 HELIX 5 5 LEU A 394 ASP A 402 1 9 HELIX 6 6 PRO A 403 GLY A 406 5 4 HELIX 7 7 ASP A 409 MET A 416 1 8 HELIX 8 8 PRO A 424 GLY A 430 1 7 HELIX 9 9 LYS A 431 ARG A 435 5 5 HELIX 10 10 ASP A 439 ASN A 468 1 30 HELIX 11 11 GLN A 470 LEU A 477 1 8 HELIX 12 12 LEU A 477 GLY A 492 1 16 HELIX 13 13 ASP A 496 GLY A 523 1 28 HELIX 14 14 SER A 530 GLU A 540 1 11 HELIX 15 15 SER A 557 ALA A 565 1 9 HELIX 16 16 GLU A 569 TYR A 587 1 19 HELIX 17 17 ILE A 588 VAL A 595 1 8 HELIX 18 18 LEU A 630 LYS A 635 1 6 HELIX 19 19 ILE A 636 GLN A 638 5 3 HELIX 20 20 GLN A 656 GLU A 667 1 12 HELIX 21 21 ASP A 668 ARG A 677 1 10 HELIX 22 22 ASP A 680 ALA A 686 1 7 HELIX 23 23 MET A 701 TYR A 714 1 14 HELIX 24 24 SER A 717 ASN A 726 1 10 HELIX 25 25 SER A 728 PHE A 743 1 16 HELIX 26 26 PHE A 743 GLY A 761 1 19 HELIX 27 27 ASN A 780 GLU A 818 1 39 HELIX 28 28 GLU A 840 ALA A 855 1 16 HELIX 29 29 THR D 308 ALA D 313 5 6 HELIX 30 30 ARG D 347 LEU D 352 1 6 HELIX 31 31 ASP D 354 ASP D 363 1 10 HELIX 32 32 ASP D 372 LYS D 383 1 12 HELIX 33 33 LEU D 394 ASP D 402 1 9 HELIX 34 34 PRO D 403 GLY D 406 5 4 HELIX 35 35 ASP D 409 MET D 416 1 8 HELIX 36 36 PRO D 424 GLY D 430 1 7 HELIX 37 37 LYS D 431 ARG D 435 5 5 HELIX 38 38 ASP D 439 ASN D 468 1 30 HELIX 39 39 GLN D 470 GLU D 476 1 7 HELIX 40 40 LEU D 477 GLY D 492 1 16 HELIX 41 41 ASP D 496 GLY D 523 1 28 HELIX 42 42 SER D 530 GLU D 540 1 11 HELIX 43 43 SER D 557 ALA D 565 1 9 HELIX 44 44 GLU D 569 ILE D 588 1 20 HELIX 45 45 ILE D 588 VAL D 595 1 8 HELIX 46 46 LEU D 630 LYS D 635 1 6 HELIX 47 47 ILE D 636 GLN D 638 5 3 HELIX 48 48 GLN D 656 GLU D 667 1 12 HELIX 49 49 ASP D 668 ARG D 677 1 10 HELIX 50 50 ASP D 680 PHE D 690 1 11 HELIX 51 51 SER D 693 VAL D 697 5 5 HELIX 52 52 THR D 698 TYR D 714 1 17 HELIX 53 53 SER D 717 LEU D 725 1 9 HELIX 54 54 SER D 728 PHE D 743 1 16 HELIX 55 55 PHE D 743 GLY D 761 1 19 HELIX 56 56 PRO D 774 SER D 778 5 5 HELIX 57 57 ASN D 780 GLU D 818 1 39 HELIX 58 58 GLU D 840 GLN D 854 1 15 SHEET 1 A 6 THR A 302 LEU A 303 0 SHEET 2 A 6 GLY A 342 LEU A 346 1 O ARG A 343 N THR A 302 SHEET 3 A 6 GLY A 334 ASN A 339 -1 N VAL A 337 O PHE A 344 SHEET 4 A 6 LYS A 315 GLU A 321 -1 N ALA A 317 O VAL A 338 SHEET 5 A 6 LYS A 367 MET A 370 1 O SER A 369 N ALA A 316 SHEET 6 A 6 VAL A 390 ASP A 393 1 O PHE A 392 N MET A 370 SHEET 1 B 3 LYS A 601 VAL A 602 0 SHEET 2 B 3 VAL A 493 VAL A 495 -1 N VAL A 493 O VAL A 602 SHEET 3 B 3 PHE A 640 VAL A 641 -1 O VAL A 641 N LYS A 494 SHEET 1 C 2 ILE A 605 ASN A 607 0 SHEET 2 C 2 SER A 617 THR A 619 -1 O THR A 619 N ILE A 605 SHEET 1 D 4 HIS A 823 GLN A 827 0 SHEET 2 D 4 GLU A 831 PRO A 837 -1 O ILE A 833 N LEU A 825 SHEET 3 D 4 TRP A 647 TYR A 654 -1 N PHE A 650 O LEU A 834 SHEET 4 D 4 VAL A 864 GLY A 869 -1 O GLY A 869 N ILE A 649 SHEET 1 E 2 TYR A 762 THR A 764 0 SHEET 2 E 2 ARG A 770 TYR A 772 -1 O ARG A 771 N VAL A 763 SHEET 1 F 6 THR D 302 ALA D 304 0 SHEET 2 F 6 GLY D 342 LEU D 346 1 O PHE D 345 N THR D 302 SHEET 3 F 6 GLY D 334 ASN D 339 -1 N ILE D 335 O LEU D 346 SHEET 4 F 6 LYS D 315 GLU D 321 -1 N ALA D 317 O VAL D 338 SHEET 5 F 6 LYS D 367 MET D 370 1 O SER D 369 N ALA D 316 SHEET 6 F 6 VAL D 390 ASP D 393 1 O PHE D 392 N MET D 370 SHEET 1 G 3 LYS D 601 VAL D 602 0 SHEET 2 G 3 VAL D 493 VAL D 495 -1 N VAL D 493 O VAL D 602 SHEET 3 G 3 PHE D 640 VAL D 641 -1 O VAL D 641 N LYS D 494 SHEET 1 H 2 LYS D 549 THR D 550 0 SHEET 2 H 2 GLY D 553 TYR D 554 -1 O GLY D 553 N THR D 550 SHEET 1 I 2 ILE D 605 ASN D 607 0 SHEET 2 I 2 SER D 617 THR D 619 -1 O THR D 619 N ILE D 605 SHEET 1 J 4 HIS D 823 GLN D 827 0 SHEET 2 J 4 GLU D 831 PRO D 837 -1 O ILE D 833 N LEU D 825 SHEET 3 J 4 TRP D 647 TYR D 654 -1 N PHE D 650 O LEU D 834 SHEET 4 J 4 VAL D 864 GLY D 869 -1 O HIS D 867 N ALA D 651 SHEET 1 K 2 TYR D 762 THR D 764 0 SHEET 2 K 2 ARG D 770 TYR D 772 -1 O ARG D 771 N VAL D 763 LINK O3' DC B 28 P 2DT B 29 1555 1555 1.61 LINK O3' DC E 28 P 2DT E 29 1555 1555 1.60 LINK O TYR A 654 MN MN A 904 1555 1555 1.80 LINK O TYR D 654 MN MN D 904 1555 1555 2.10 LINK OD2 ASP D 830 MN MN D 904 1555 1555 2.79 LINK O2B D3T D 901 MN MN D 904 1555 1555 2.38 LINK MN MN D 904 O HOH D1034 1555 1555 2.25 CISPEP 1 GLU A 620 PRO A 621 0 3.53 CISPEP 2 GLU D 620 PRO D 621 0 -1.66 SITE 1 AC1 2 ARG A 517 ASN A 573 SITE 1 AC2 4 ARG A 779 ASN A 780 HOH A1311 PRO D 424 SITE 1 AC3 5 HOH A1011 HOH A1380 LEU D 352 LYS D 383 SITE 2 AC3 5 HOH D1072 SITE 1 AC4 3 ASP A 653 TYR A 654 ASP A 830 SITE 1 AC5 18 SER D 655 GLN D 656 HIS D 682 ARG D 702 SITE 2 AC5 18 LYS D 706 ALA D 707 TYR D 710 ASP D 830 SITE 3 AC5 18 MN D 904 HOH D1034 HOH D1078 HOH D1199 SITE 4 AC5 18 HOH D1223 HOH D1266 HOH D1309 HOH D1392 SITE 5 AC5 18 2DT E 29 DG F 3 SITE 1 AC6 4 MET D 299 ALA D 300 ARG D 343 ARG D 677 SITE 1 AC7 5 ARG D 306 THR D 308 GLU D 309 HOH D1205 SITE 2 AC7 5 HOH D1610 SITE 1 AC8 4 TYR D 654 ASP D 830 D3T D 901 HOH D1034 CRYST1 93.830 109.330 150.110 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010658 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009147 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006662 0.00000