HEADER TRANSPORT PROTEIN 09-MAY-12 4F3P TITLE CRYSTAL STRUCTURE OF A GLUTAMINE-BINDING PERIPLASMIC PROTEIN FROM TITLE 2 BURKHOLDERIA PSEUDOMALLEI IN COMPLEX WITH GLUTAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMINE-BINDING PERIPLASMIC PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 25-250; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 320372; SOURCE 4 STRAIN: 1710B; SOURCE 5 GENE: BURPS1710B_A1487, GLNH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, STRUCTURAL GENOMICS, BURKHOLDERIA PSEUDOMALLEI, GLUTAMINE, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, TRANSPORT KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 13-SEP-23 4F3P 1 SEQADV REVDAT 3 11-OCT-17 4F3P 1 REMARK REVDAT 2 17-FEB-16 4F3P 1 JRNL REVDAT 1 23-MAY-12 4F3P 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID),J.ABENDROTH,B.SANKARAN,J.W.FAIRMAN,B.STAKER, JRNL AUTH 3 P.MYLER,L.STEWART JRNL TITL CRYSTAL STRUCTURE OF A GLUTAMINE-BINDING PERIPLASMIC PROTEIN JRNL TITL 2 FROM BURKHOLDERIA PSEUDOMALLEI IN COMPLEX WITH GLUTAMINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 986 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1283 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3345 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.50000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.388 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.829 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3430 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2260 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4662 ; 1.588 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5524 ; 1.166 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 443 ; 6.272 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;42.528 ;24.722 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 533 ;13.939 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.630 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 515 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3891 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 702 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 0 A 26 A 244 0 REMARK 3 0 B 26 B 244 0 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 300 REMARK 3 RESIDUE RANGE : A 401 A 468 REMARK 3 ORIGIN FOR THE GROUP (A): -8.8230 -19.9240 -24.0210 REMARK 3 T TENSOR REMARK 3 T11: 0.0879 T22: 0.2261 REMARK 3 T33: 0.1104 T12: 0.0088 REMARK 3 T13: 0.0980 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.9225 L22: 3.2034 REMARK 3 L33: 0.9554 L12: -0.8487 REMARK 3 L13: -0.0264 L23: 0.0088 REMARK 3 S TENSOR REMARK 3 S11: -0.0473 S12: -0.1074 S13: -0.0295 REMARK 3 S21: 0.0453 S22: 0.0564 S23: 0.0192 REMARK 3 S31: 0.0006 S32: 0.1341 S33: -0.0091 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 300 REMARK 3 RESIDUE RANGE : B 401 B 460 REMARK 3 ORIGIN FOR THE GROUP (A): -29.5600 7.3860 -4.9280 REMARK 3 T TENSOR REMARK 3 T11: 0.1770 T22: 0.1603 REMARK 3 T33: 0.0478 T12: 0.0008 REMARK 3 T13: 0.0822 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 2.8268 L22: 1.0914 REMARK 3 L33: 1.3597 L12: -0.2397 REMARK 3 L13: -0.3317 L23: -0.2067 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: -0.0876 S13: 0.0560 REMARK 3 S21: 0.2473 S22: 0.0692 S23: 0.0484 REMARK 3 S31: -0.1274 S32: -0.0077 S33: -0.0649 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4F3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : ASYMMETRIC CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19249 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.52400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: PDB ENTRY 1GGG MODIFIED WITH CCP4 PROGRAM CHAINSAW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MD MORPHEUS SCREEN C12: 12.5% PEG REMARK 280 3350, 12.5% PEG 1000, 12.5% MPD, 30MM SODIUM NITRATE, 30MM REMARK 280 DISODIUM HYDRGON PHOSPHATE, 30MM AMMONIUM SULPHATE, 100MM BICINE/ REMARK 280 TRIZMA; BUPSA.17285.B.A2 PW PS01148 20MG/ML, TRAY 232242C12, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.25000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 3 REMARK 465 ALA A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 MET A 11 REMARK 465 GLY A 12 REMARK 465 THR A 13 REMARK 465 LEU A 14 REMARK 465 GLU A 15 REMARK 465 ALA A 16 REMARK 465 GLN A 17 REMARK 465 THR A 18 REMARK 465 GLN A 19 REMARK 465 GLY A 20 REMARK 465 PRO A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 MET A 24 REMARK 465 ALA A 25 REMARK 465 PRO A 297 REMARK 465 LYS A 298 REMARK 465 SER A 299 REMARK 465 MET B 3 REMARK 465 ALA B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 MET B 11 REMARK 465 GLY B 12 REMARK 465 THR B 13 REMARK 465 LEU B 14 REMARK 465 GLU B 15 REMARK 465 ALA B 16 REMARK 465 GLN B 17 REMARK 465 THR B 18 REMARK 465 GLN B 19 REMARK 465 GLY B 20 REMARK 465 PRO B 21 REMARK 465 GLY B 22 REMARK 465 SER B 23 REMARK 465 MET B 24 REMARK 465 ALA B 25 REMARK 465 SER B 294 REMARK 465 GLU B 295 REMARK 465 PRO B 296 REMARK 465 PRO B 297 REMARK 465 LYS B 298 REMARK 465 SER B 299 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 37 CG SD CE REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 ASP A 128 CG OD1 OD2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 SER A 245 OG REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 LYS B 42 CG CD CE NZ REMARK 470 ASP B 45 CG OD1 OD2 REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 LYS B 125 CG CD CE NZ REMARK 470 ASP B 128 CG OD1 OD2 REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 GLU B 191 CG CD OE1 OE2 REMARK 470 ARG B 195 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 221 CG CD CE NZ REMARK 470 LYS B 237 CG CD CE NZ REMARK 470 LYS B 240 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 40 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 GLU B 40 CB - CA - C ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 35 101.20 -165.85 REMARK 500 SER A 90 31.70 -161.98 REMARK 500 ASN A 120 -43.11 -27.44 REMARK 500 ASN A 190 -102.39 -113.91 REMARK 500 SER B 35 99.42 -166.18 REMARK 500 SER B 90 31.31 -160.87 REMARK 500 ASN B 120 -32.74 -39.25 REMARK 500 ASN B 190 -102.32 -112.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BUPSA.17285.B RELATED DB: TARGETTRACK DBREF 4F3P A 25 299 UNP Q3JIF9 Q3JIF9_BURP1 25 250 DBREF 4F3P B 25 299 UNP Q3JIF9 Q3JIF9_BURP1 25 250 SEQADV 4F3P MET A 3 UNP Q3JIF9 INITIATING METHIONINE SEQADV 4F3P ALA A 4 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P HIS A 5 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P HIS A 6 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P HIS A 7 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P HIS A 8 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P HIS A 9 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P HIS A 10 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P MET A 11 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P GLY A 12 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P THR A 13 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P LEU A 14 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P GLU A 15 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P ALA A 16 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P GLN A 17 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P THR A 18 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P GLN A 19 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P GLY A 20 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P PRO A 21 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P GLY A 22 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P SER A 23 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P MET A 24 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P GLN A 300 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P MET B 3 UNP Q3JIF9 INITIATING METHIONINE SEQADV 4F3P ALA B 4 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P HIS B 5 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P HIS B 6 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P HIS B 7 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P HIS B 8 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P HIS B 9 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P HIS B 10 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P MET B 11 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P GLY B 12 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P THR B 13 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P LEU B 14 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P GLU B 15 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P ALA B 16 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P GLN B 17 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P THR B 18 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P GLN B 19 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P GLY B 20 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P PRO B 21 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P GLY B 22 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P SER B 23 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P MET B 24 UNP Q3JIF9 EXPRESSION TAG SEQADV 4F3P GLN B 300 UNP Q3JIF9 EXPRESSION TAG SEQRES 1 A 249 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 249 ALA GLN THR GLN GLY PRO GLY SER MET ALA LYS GLU LEU SEQRES 3 A 249 VAL VAL GLY THR ASP THR SER PHE MET PRO PHE GLU PHE SEQRES 4 A 249 LYS GLN GLY ASP LYS TYR VAL GLY PHE ASP LEU ASP LEU SEQRES 5 A 249 TRP ALA GLU ILE ALA LYS GLY ALA GLY TRP THR TYR LYS SEQRES 6 A 249 ILE GLN PRO MET ASP PHE ALA GLY LEU ILE PRO ALA LEU SEQRES 7 A 249 GLN THR GLN ASN ILE ASP VAL ALA LEU SER GLY MET THR SEQRES 8 A 249 ILE LYS GLU GLU ARG ARG LYS ALA ILE ASP PHE SER ASP SEQRES 9 A 249 PRO TYR TYR ASP SER GLY LEU ALA ALA MET VAL GLN ALA SEQRES 10 A 249 ASN ASN THR THR ILE LYS SER ILE ASP ASP LEU ASN GLY SEQRES 11 A 249 LYS VAL ILE ALA ALA LYS THR GLY THR ALA THR ILE ASP SEQRES 12 A 249 TRP ILE LYS ALA HIS LEU LYS PRO LYS GLU ILE ARG GLN SEQRES 13 A 249 PHE PRO ASN ILE ASP GLN ALA TYR LEU ALA LEU GLU ALA SEQRES 14 A 249 GLY ARG VAL ASP ALA ALA MET HIS ASP THR PRO ASN VAL SEQRES 15 A 249 LEU PHE PHE VAL ASN ASN GLU GLY LYS GLY ARG VAL LYS SEQRES 16 A 249 VAL ALA GLY ALA PRO VAL SER GLY ASP LYS TYR GLY ILE SEQRES 17 A 249 GLY PHE PRO LYS GLY SER PRO LEU VAL ALA LYS VAL ASN SEQRES 18 A 249 ALA GLU LEU ALA ARG MET LYS ALA ASP GLY ARG TYR ALA SEQRES 19 A 249 LYS ILE TYR LYS LYS TRP PHE GLY SER GLU PRO PRO LYS SEQRES 20 A 249 SER GLN SEQRES 1 B 249 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 249 ALA GLN THR GLN GLY PRO GLY SER MET ALA LYS GLU LEU SEQRES 3 B 249 VAL VAL GLY THR ASP THR SER PHE MET PRO PHE GLU PHE SEQRES 4 B 249 LYS GLN GLY ASP LYS TYR VAL GLY PHE ASP LEU ASP LEU SEQRES 5 B 249 TRP ALA GLU ILE ALA LYS GLY ALA GLY TRP THR TYR LYS SEQRES 6 B 249 ILE GLN PRO MET ASP PHE ALA GLY LEU ILE PRO ALA LEU SEQRES 7 B 249 GLN THR GLN ASN ILE ASP VAL ALA LEU SER GLY MET THR SEQRES 8 B 249 ILE LYS GLU GLU ARG ARG LYS ALA ILE ASP PHE SER ASP SEQRES 9 B 249 PRO TYR TYR ASP SER GLY LEU ALA ALA MET VAL GLN ALA SEQRES 10 B 249 ASN ASN THR THR ILE LYS SER ILE ASP ASP LEU ASN GLY SEQRES 11 B 249 LYS VAL ILE ALA ALA LYS THR GLY THR ALA THR ILE ASP SEQRES 12 B 249 TRP ILE LYS ALA HIS LEU LYS PRO LYS GLU ILE ARG GLN SEQRES 13 B 249 PHE PRO ASN ILE ASP GLN ALA TYR LEU ALA LEU GLU ALA SEQRES 14 B 249 GLY ARG VAL ASP ALA ALA MET HIS ASP THR PRO ASN VAL SEQRES 15 B 249 LEU PHE PHE VAL ASN ASN GLU GLY LYS GLY ARG VAL LYS SEQRES 16 B 249 VAL ALA GLY ALA PRO VAL SER GLY ASP LYS TYR GLY ILE SEQRES 17 B 249 GLY PHE PRO LYS GLY SER PRO LEU VAL ALA LYS VAL ASN SEQRES 18 B 249 ALA GLU LEU ALA ARG MET LYS ALA ASP GLY ARG TYR ALA SEQRES 19 B 249 LYS ILE TYR LYS LYS TRP PHE GLY SER GLU PRO PRO LYS SEQRES 20 B 249 SER GLN FORMUL 3 HOH *128(H2 O) HELIX 1 1 GLY A 49 GLY A 63 1 15 HELIX 2 2 ASP A 72 ALA A 74 5 3 HELIX 3 3 GLY A 75 THR A 82 1 8 HELIX 4 4 LYS A 95 LYS A 100 1 6 HELIX 5 5 ILE A 127 ASN A 131 5 5 HELIX 6 6 THR A 141 LEU A 151 1 11 HELIX 7 7 ASN A 161 ALA A 171 1 11 HELIX 8 8 THR A 181 ASN A 190 1 10 HELIX 9 9 PRO A 217 GLY A 233 1 17 HELIX 10 10 GLY A 233 GLY A 244 1 12 HELIX 11 11 GLY B 49 GLY B 63 1 15 HELIX 12 12 ASP B 72 ALA B 74 5 3 HELIX 13 13 GLY B 75 THR B 82 1 8 HELIX 14 14 LYS B 95 LYS B 100 1 6 HELIX 15 15 ILE B 127 ASN B 131 5 5 HELIX 16 16 THR B 141 LEU B 151 1 11 HELIX 17 17 ASN B 161 ALA B 171 1 11 HELIX 18 18 THR B 181 ASN B 190 1 10 HELIX 19 19 LEU B 218 GLY B 233 1 16 HELIX 20 20 GLY B 233 GLY B 244 1 12 SHEET 1 A 5 TYR A 66 MET A 71 0 SHEET 2 A 5 LEU A 28 ASP A 33 1 N VAL A 30 O LYS A 67 SHEET 3 A 5 VAL A 87 THR A 93 1 O LEU A 89 N GLY A 31 SHEET 4 A 5 VAL A 196 PRO A 213 -1 O GLY A 209 N MET A 92 SHEET 5 A 5 ILE A 102 PHE A 104 -1 N ASP A 103 O PHE A 212 SHEET 1 B 8 TYR A 66 MET A 71 0 SHEET 2 B 8 LEU A 28 ASP A 33 1 N VAL A 30 O LYS A 67 SHEET 3 B 8 VAL A 87 THR A 93 1 O LEU A 89 N GLY A 31 SHEET 4 B 8 VAL A 196 PRO A 213 -1 O GLY A 209 N MET A 92 SHEET 5 B 8 TYR A 109 GLN A 118 -1 N VAL A 117 O LYS A 197 SHEET 6 B 8 ALA A 176 ASP A 180 -1 O ALA A 177 N MET A 116 SHEET 7 B 8 VAL A 134 LYS A 138 1 N ALA A 136 O ALA A 176 SHEET 8 B 8 GLU A 155 PHE A 159 1 O GLU A 155 N ILE A 135 SHEET 1 C 2 PHE A 41 GLN A 43 0 SHEET 2 C 2 LYS A 46 VAL A 48 -1 O LYS A 46 N GLN A 43 SHEET 1 D 5 THR B 65 MET B 71 0 SHEET 2 D 5 GLU B 27 ASP B 33 1 N VAL B 30 O LYS B 67 SHEET 3 D 5 VAL B 87 THR B 93 1 O LEU B 89 N GLY B 31 SHEET 4 D 5 VAL B 196 PRO B 213 -1 O GLY B 209 N MET B 92 SHEET 5 D 5 ILE B 102 PHE B 104 -1 N ASP B 103 O PHE B 212 SHEET 1 E 8 THR B 65 MET B 71 0 SHEET 2 E 8 GLU B 27 ASP B 33 1 N VAL B 30 O LYS B 67 SHEET 3 E 8 VAL B 87 THR B 93 1 O LEU B 89 N GLY B 31 SHEET 4 E 8 VAL B 196 PRO B 213 -1 O GLY B 209 N MET B 92 SHEET 5 E 8 TYR B 109 GLN B 118 -1 N VAL B 117 O LYS B 197 SHEET 6 E 8 ALA B 176 ASP B 180 -1 O ALA B 177 N MET B 116 SHEET 7 E 8 VAL B 134 LYS B 138 1 N ALA B 136 O ALA B 176 SHEET 8 E 8 GLU B 155 PHE B 159 1 O GLU B 155 N ILE B 135 SHEET 1 F 2 PHE B 41 GLN B 43 0 SHEET 2 F 2 LYS B 46 VAL B 48 -1 O LYS B 46 N GLN B 43 CISPEP 1 MET A 37 PRO A 38 0 -2.48 CISPEP 2 MET B 37 PRO B 38 0 -1.45 CRYST1 56.330 74.500 60.190 90.00 100.63 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017753 0.000000 0.003332 0.00000 SCALE2 0.000000 0.013423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016904 0.00000