data_4F3Q # _entry.id 4F3Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4F3Q RCSB RCSB072416 WWPDB D_1000072416 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4F3Q _pdbx_database_status.recvd_initial_deposition_date 2012-05-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Franklin, M.C.' 1 'Cheung, J.' 2 'Rudolph, M.' 3 'Cassidy, M.' 4 'Gary, E.' 5 'Burshteyn, F.' 6 'Love, J.' 7 # _citation.id primary _citation.title 'Structural genomics for drug design against the pathogen Coxiella burnetii.' _citation.journal_abbrev Proteins _citation.journal_volume 83 _citation.page_first 2124 _citation.page_last 2136 _citation.year 2015 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26033498 _citation.pdbx_database_id_DOI 10.1002/prot.24841 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Franklin, M.C.' 1 primary 'Cheung, J.' 2 primary 'Rudolph, M.J.' 3 primary 'Burshteyn, F.' 4 primary 'Cassidy, M.' 5 primary 'Gary, E.' 6 primary 'Hillerich, B.' 7 primary 'Yao, Z.K.' 8 primary 'Carlier, P.R.' 9 primary 'Totrov, M.' 10 primary 'Love, J.D.' 11 # _cell.entry_id 4F3Q _cell.length_a 53.062 _cell.length_b 53.062 _cell.length_c 167.538 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4F3Q _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional regulatory protein CBU_1566' 27206.361 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 64 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)AGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAAN(MSE)PKDTITRA IKRGAGSGAGDNLVEVRYEGYGPSGVAV(MSE)VDCLTDNKNRTVAEVRHAFSKCDGNLGTEGSVAYLFKQRGLITFPPN SDEEKI(MSE)EIALEVGAEDVTTNDDGSIDVTTLPEDFEKIRNA(MSE)KAADLNPSHAEVTVLASTEVGLDKDSAEQ (MSE)LRLTE(MSE)LEDLDDVQNVYSNADYPEEVL ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMAGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANMPKDTITRAIKRGAGSG AGDNLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVRHAFSKCDGNLGTEGSVAYLFKQRGLITFPPNSDEEKIMEIALE VGAEDVTTNDDGSIDVTTLPEDFEKIRNAMKAADLNPSHAEVTVLASTEVGLDKDSAEQMLRLTEMLEDLDDVQNVYSNA DYPEEVL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 ALA n 1 6 GLY n 1 7 HIS n 1 8 SER n 1 9 LYS n 1 10 TRP n 1 11 ALA n 1 12 ASN n 1 13 ILE n 1 14 LYS n 1 15 HIS n 1 16 ALA n 1 17 LYS n 1 18 ALA n 1 19 ARG n 1 20 GLN n 1 21 ASP n 1 22 ALA n 1 23 LYS n 1 24 ARG n 1 25 GLY n 1 26 LYS n 1 27 VAL n 1 28 PHE n 1 29 THR n 1 30 LYS n 1 31 LEU n 1 32 ILE n 1 33 ARG n 1 34 GLU n 1 35 ILE n 1 36 THR n 1 37 VAL n 1 38 ALA n 1 39 ALA n 1 40 ARG n 1 41 LEU n 1 42 GLY n 1 43 GLY n 1 44 GLU n 1 45 ASP n 1 46 ILE n 1 47 ASP n 1 48 SER n 1 49 ASN n 1 50 PRO n 1 51 ARG n 1 52 LEU n 1 53 ARG n 1 54 ALA n 1 55 VAL n 1 56 VAL n 1 57 ASP n 1 58 LYS n 1 59 ALA n 1 60 PHE n 1 61 ALA n 1 62 ALA n 1 63 ASN n 1 64 MSE n 1 65 PRO n 1 66 LYS n 1 67 ASP n 1 68 THR n 1 69 ILE n 1 70 THR n 1 71 ARG n 1 72 ALA n 1 73 ILE n 1 74 LYS n 1 75 ARG n 1 76 GLY n 1 77 ALA n 1 78 GLY n 1 79 SER n 1 80 GLY n 1 81 ALA n 1 82 GLY n 1 83 ASP n 1 84 ASN n 1 85 LEU n 1 86 VAL n 1 87 GLU n 1 88 VAL n 1 89 ARG n 1 90 TYR n 1 91 GLU n 1 92 GLY n 1 93 TYR n 1 94 GLY n 1 95 PRO n 1 96 SER n 1 97 GLY n 1 98 VAL n 1 99 ALA n 1 100 VAL n 1 101 MSE n 1 102 VAL n 1 103 ASP n 1 104 CYS n 1 105 LEU n 1 106 THR n 1 107 ASP n 1 108 ASN n 1 109 LYS n 1 110 ASN n 1 111 ARG n 1 112 THR n 1 113 VAL n 1 114 ALA n 1 115 GLU n 1 116 VAL n 1 117 ARG n 1 118 HIS n 1 119 ALA n 1 120 PHE n 1 121 SER n 1 122 LYS n 1 123 CYS n 1 124 ASP n 1 125 GLY n 1 126 ASN n 1 127 LEU n 1 128 GLY n 1 129 THR n 1 130 GLU n 1 131 GLY n 1 132 SER n 1 133 VAL n 1 134 ALA n 1 135 TYR n 1 136 LEU n 1 137 PHE n 1 138 LYS n 1 139 GLN n 1 140 ARG n 1 141 GLY n 1 142 LEU n 1 143 ILE n 1 144 THR n 1 145 PHE n 1 146 PRO n 1 147 PRO n 1 148 ASN n 1 149 SER n 1 150 ASP n 1 151 GLU n 1 152 GLU n 1 153 LYS n 1 154 ILE n 1 155 MSE n 1 156 GLU n 1 157 ILE n 1 158 ALA n 1 159 LEU n 1 160 GLU n 1 161 VAL n 1 162 GLY n 1 163 ALA n 1 164 GLU n 1 165 ASP n 1 166 VAL n 1 167 THR n 1 168 THR n 1 169 ASN n 1 170 ASP n 1 171 ASP n 1 172 GLY n 1 173 SER n 1 174 ILE n 1 175 ASP n 1 176 VAL n 1 177 THR n 1 178 THR n 1 179 LEU n 1 180 PRO n 1 181 GLU n 1 182 ASP n 1 183 PHE n 1 184 GLU n 1 185 LYS n 1 186 ILE n 1 187 ARG n 1 188 ASN n 1 189 ALA n 1 190 MSE n 1 191 LYS n 1 192 ALA n 1 193 ALA n 1 194 ASP n 1 195 LEU n 1 196 ASN n 1 197 PRO n 1 198 SER n 1 199 HIS n 1 200 ALA n 1 201 GLU n 1 202 VAL n 1 203 THR n 1 204 VAL n 1 205 LEU n 1 206 ALA n 1 207 SER n 1 208 THR n 1 209 GLU n 1 210 VAL n 1 211 GLY n 1 212 LEU n 1 213 ASP n 1 214 LYS n 1 215 ASP n 1 216 SER n 1 217 ALA n 1 218 GLU n 1 219 GLN n 1 220 MSE n 1 221 LEU n 1 222 ARG n 1 223 LEU n 1 224 THR n 1 225 GLU n 1 226 MSE n 1 227 LEU n 1 228 GLU n 1 229 ASP n 1 230 LEU n 1 231 ASP n 1 232 ASP n 1 233 VAL n 1 234 GLN n 1 235 ASN n 1 236 VAL n 1 237 TYR n 1 238 SER n 1 239 ASN n 1 240 ALA n 1 241 ASP n 1 242 TYR n 1 243 PRO n 1 244 GLU n 1 245 GLU n 1 246 VAL n 1 247 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CBU_1566 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'RSA 493 Nine Mile Phase I' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Coxiella burnetii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 227377 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y1566_COXBU _struct_ref.pdbx_db_accession Q83BE4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANMPKDTITRAIKRGAGSGAGD NLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVRHAFSKCDGNLGTEGSVAYLFKQRGLITFPPNSDEEKIMEIALEVGA EDVTTNDDGSIDVTTLPEDFEKIRNAMKAADLNPSHAEVTVLASTEVGLDKDSAEQMLRLTEMLEDLDDVQNVYSNADYP EEVL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4F3Q _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 247 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q83BE4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 244 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 244 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4F3Q SER A 1 ? UNP Q83BE4 ? ? 'EXPRESSION TAG' -2 1 1 4F3Q ASN A 2 ? UNP Q83BE4 ? ? 'EXPRESSION TAG' -1 2 1 4F3Q ALA A 3 ? UNP Q83BE4 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4F3Q _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_percent_sol 43.25 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.1 M Na HEPES, 2.4 M ammonium sulfate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-10-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979 # _reflns.entry_id 4F3Q _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 100 _reflns.d_resolution_high 2.15 _reflns.number_obs 13933 _reflns.number_all 13955 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rsym_value 0.096 _reflns.pdbx_netI_over_sigmaI 48.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 26.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.15 _reflns_shell.d_res_low 2.19 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.681 _reflns_shell.meanI_over_sigI_obs 5.3 _reflns_shell.pdbx_redundancy 27.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 666 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4F3Q _refine.ls_number_reflns_obs 13165 _refine.ls_number_reflns_all 13193 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.83 _refine.ls_d_res_high 2.15 _refine.ls_percent_reflns_obs 99.79 _refine.ls_R_factor_obs 0.22122 _refine.ls_R_factor_R_work 0.21935 _refine.ls_R_factor_R_free 0.25893 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 691 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.929 _refine.B_iso_mean 50.555 _refine.aniso_B[1][1] 0.63 _refine.aniso_B[2][2] 0.63 _refine.aniso_B[3][3] -1.27 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.276 _refine.pdbx_overall_ESU_R_Free 0.213 _refine.overall_SU_ML 0.163 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 14.422 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.ls_R_factor_all ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1806 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 64 _refine_hist.number_atoms_total 1875 _refine_hist.d_res_high 2.15 _refine_hist.d_res_low 44.83 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.007 0.022 ? 1832 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.001 0.020 ? 1232 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 0.946 1.973 ? 2477 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.764 3.000 ? 3015 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 4.695 5.000 ? 232 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 32.672 25.114 ? 88 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 15.134 15.000 ? 328 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 14.615 15.000 ? 14 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.051 0.200 ? 285 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.002 0.020 ? 2052 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 341 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 0.315 1.500 ? 1163 ? 'X-RAY DIFFRACTION' r_mcbond_other 0.057 1.500 ? 473 ? 'X-RAY DIFFRACTION' r_mcangle_it 0.643 2.000 ? 1872 ? 'X-RAY DIFFRACTION' r_scbond_it 1.189 3.000 ? 669 ? 'X-RAY DIFFRACTION' r_scangle_it 2.070 4.500 ? 605 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.15 _refine_ls_shell.d_res_low 2.202 _refine_ls_shell.number_reflns_R_work 959 _refine_ls_shell.R_factor_R_work 0.249 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.305 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 46 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4F3Q _struct.title 'Structure of a YebC family protein (CBU_1566) from Coxiella burnetii' _struct.pdbx_descriptor 'Transcriptional regulatory protein CBU_1566' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4F3Q _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'YebC family, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details 'AS PER THE AUTHORS THE BIOLOGICAL ASSEMBLY IS UNKNOWN' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 9 ? GLY A 43 ? LYS A 6 GLY A 40 1 ? 35 HELX_P HELX_P2 2 ASP A 45 ? SER A 48 ? ASP A 42 SER A 45 5 ? 4 HELX_P HELX_P3 3 ASN A 49 ? ALA A 62 ? ASN A 46 ALA A 59 1 ? 14 HELX_P HELX_P4 4 PRO A 65 ? GLY A 76 ? PRO A 62 GLY A 73 1 ? 12 HELX_P HELX_P5 5 PRO A 95 ? GLY A 97 ? PRO A 92 GLY A 94 5 ? 3 HELX_P HELX_P6 6 ASN A 108 ? CYS A 123 ? ASN A 105 CYS A 120 1 ? 16 HELX_P HELX_P7 7 VAL A 133 ? TYR A 135 ? VAL A 130 TYR A 132 5 ? 3 HELX_P HELX_P8 8 ASP A 150 ? GLY A 162 ? ASP A 147 GLY A 159 1 ? 13 HELX_P HELX_P9 9 LEU A 179 ? GLU A 181 ? LEU A 176 GLU A 178 5 ? 3 HELX_P HELX_P10 10 ASP A 182 ? ALA A 193 ? ASP A 179 ALA A 190 1 ? 12 HELX_P HELX_P11 11 ASP A 213 ? ASP A 229 ? ASP A 210 ASP A 226 1 ? 17 HELX_P HELX_P12 12 PRO A 243 ? LEU A 247 ? PRO A 240 LEU A 244 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ASN 63 C ? ? ? 1_555 A MSE 64 N ? ? A ASN 60 A MSE 61 1_555 ? ? ? ? ? ? ? 1.334 ? covale2 covale ? ? A MSE 64 C ? ? ? 1_555 A PRO 65 N ? ? A MSE 61 A PRO 62 1_555 ? ? ? ? ? ? ? 1.346 ? covale3 covale ? ? A VAL 100 C ? ? ? 1_555 A MSE 101 N ? ? A VAL 97 A MSE 98 1_555 ? ? ? ? ? ? ? 1.331 ? covale4 covale ? ? A MSE 101 C ? ? ? 1_555 A VAL 102 N ? ? A MSE 98 A VAL 99 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale ? ? A ILE 154 C ? ? ? 1_555 A MSE 155 N ? ? A ILE 151 A MSE 152 1_555 ? ? ? ? ? ? ? 1.333 ? covale6 covale ? ? A MSE 155 C ? ? ? 1_555 A GLU 156 N ? ? A MSE 152 A GLU 153 1_555 ? ? ? ? ? ? ? 1.333 ? covale7 covale ? ? A ALA 189 C ? ? ? 1_555 A MSE 190 N ? ? A ALA 186 A MSE 187 1_555 ? ? ? ? ? ? ? 1.325 ? covale8 covale ? ? A MSE 190 C ? ? ? 1_555 A LYS 191 N ? ? A MSE 187 A LYS 188 1_555 ? ? ? ? ? ? ? 1.330 ? covale9 covale ? ? A GLN 219 C ? ? ? 1_555 A MSE 220 N ? ? A GLN 216 A MSE 217 1_555 ? ? ? ? ? ? ? 1.330 ? covale10 covale ? ? A MSE 220 C ? ? ? 1_555 A LEU 221 N ? ? A MSE 217 A LEU 218 1_555 ? ? ? ? ? ? ? 1.327 ? covale11 covale ? ? A GLU 225 C ? ? ? 1_555 A MSE 226 N ? ? A GLU 222 A MSE 223 1_555 ? ? ? ? ? ? ? 1.330 ? covale12 covale ? ? A MSE 226 C ? ? ? 1_555 A LEU 227 N ? ? A MSE 223 A LEU 224 1_555 ? ? ? ? ? ? ? 1.327 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASN A 126 ? LEU A 127 ? ASN A 123 LEU A 124 A 2 VAL A 86 ? TYR A 93 ? VAL A 83 TYR A 90 A 3 ALA A 99 ? THR A 106 ? ALA A 96 THR A 103 A 4 VAL A 233 ? SER A 238 ? VAL A 230 SER A 235 B 1 ASP A 165 ? THR A 168 ? ASP A 162 THR A 165 B 2 ILE A 174 ? THR A 178 ? ILE A 171 THR A 175 B 3 PHE A 137 ? PHE A 145 ? PHE A 134 PHE A 142 B 4 HIS A 199 ? ALA A 206 ? HIS A 196 ALA A 203 C 1 VAL A 210 ? GLY A 211 ? VAL A 207 GLY A 208 C 2 ALA A 240 ? ASP A 241 ? ALA A 237 ASP A 238 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASN A 126 ? O ASN A 123 N TYR A 93 ? N TYR A 90 A 2 3 N VAL A 88 ? N VAL A 85 O CYS A 104 ? O CYS A 101 A 3 4 N MSE A 101 ? N MSE A 98 O TYR A 237 ? O TYR A 234 B 1 2 N THR A 167 ? N THR A 164 O ASP A 175 ? O ASP A 172 B 2 3 O ILE A 174 ? O ILE A 171 N PHE A 145 ? N PHE A 142 B 3 4 N THR A 144 ? N THR A 141 O HIS A 199 ? O HIS A 196 C 1 2 N VAL A 210 ? N VAL A 207 O ASP A 241 ? O ASP A 238 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 PRO A 65 ? PRO A 62 . ? 1_555 ? 2 AC1 6 LYS A 66 ? LYS A 63 . ? 1_555 ? 3 AC1 6 HOH C . ? HOH A 402 . ? 1_555 ? 4 AC1 6 HOH C . ? HOH A 408 . ? 1_555 ? 5 AC1 6 HOH C . ? HOH A 419 . ? 1_555 ? 6 AC1 6 HOH C . ? HOH A 430 . ? 1_555 ? # _database_PDB_matrix.entry_id 4F3Q _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4F3Q _atom_sites.fract_transf_matrix[1][1] 0.018846 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018846 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005969 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 ALA 5 2 ? ? ? A . n A 1 6 GLY 6 3 ? ? ? A . n A 1 7 HIS 7 4 ? ? ? A . n A 1 8 SER 8 5 ? ? ? A . n A 1 9 LYS 9 6 6 LYS LYS A . n A 1 10 TRP 10 7 7 TRP TRP A . n A 1 11 ALA 11 8 8 ALA ALA A . n A 1 12 ASN 12 9 9 ASN ASN A . n A 1 13 ILE 13 10 10 ILE ILE A . n A 1 14 LYS 14 11 11 LYS LYS A . n A 1 15 HIS 15 12 12 HIS HIS A . n A 1 16 ALA 16 13 13 ALA ALA A . n A 1 17 LYS 17 14 14 LYS LYS A . n A 1 18 ALA 18 15 15 ALA ALA A . n A 1 19 ARG 19 16 16 ARG ARG A . n A 1 20 GLN 20 17 17 GLN GLN A . n A 1 21 ASP 21 18 18 ASP ASP A . n A 1 22 ALA 22 19 19 ALA ALA A . n A 1 23 LYS 23 20 20 LYS LYS A . n A 1 24 ARG 24 21 21 ARG ARG A . n A 1 25 GLY 25 22 22 GLY GLY A . n A 1 26 LYS 26 23 23 LYS LYS A . n A 1 27 VAL 27 24 24 VAL VAL A . n A 1 28 PHE 28 25 25 PHE PHE A . n A 1 29 THR 29 26 26 THR THR A . n A 1 30 LYS 30 27 27 LYS LYS A . n A 1 31 LEU 31 28 28 LEU LEU A . n A 1 32 ILE 32 29 29 ILE ILE A . n A 1 33 ARG 33 30 30 ARG ARG A . n A 1 34 GLU 34 31 31 GLU GLU A . n A 1 35 ILE 35 32 32 ILE ILE A . n A 1 36 THR 36 33 33 THR THR A . n A 1 37 VAL 37 34 34 VAL VAL A . n A 1 38 ALA 38 35 35 ALA ALA A . n A 1 39 ALA 39 36 36 ALA ALA A . n A 1 40 ARG 40 37 37 ARG ARG A . n A 1 41 LEU 41 38 38 LEU LEU A . n A 1 42 GLY 42 39 39 GLY GLY A . n A 1 43 GLY 43 40 40 GLY GLY A . n A 1 44 GLU 44 41 41 GLU GLU A . n A 1 45 ASP 45 42 42 ASP ASP A . n A 1 46 ILE 46 43 43 ILE ILE A . n A 1 47 ASP 47 44 44 ASP ASP A . n A 1 48 SER 48 45 45 SER SER A . n A 1 49 ASN 49 46 46 ASN ASN A . n A 1 50 PRO 50 47 47 PRO PRO A . n A 1 51 ARG 51 48 48 ARG ARG A . n A 1 52 LEU 52 49 49 LEU LEU A . n A 1 53 ARG 53 50 50 ARG ARG A . n A 1 54 ALA 54 51 51 ALA ALA A . n A 1 55 VAL 55 52 52 VAL VAL A . n A 1 56 VAL 56 53 53 VAL VAL A . n A 1 57 ASP 57 54 54 ASP ASP A . n A 1 58 LYS 58 55 55 LYS LYS A . n A 1 59 ALA 59 56 56 ALA ALA A . n A 1 60 PHE 60 57 57 PHE PHE A . n A 1 61 ALA 61 58 58 ALA ALA A . n A 1 62 ALA 62 59 59 ALA ALA A . n A 1 63 ASN 63 60 60 ASN ASN A . n A 1 64 MSE 64 61 61 MSE MSE A . n A 1 65 PRO 65 62 62 PRO PRO A . n A 1 66 LYS 66 63 63 LYS LYS A . n A 1 67 ASP 67 64 64 ASP ASP A . n A 1 68 THR 68 65 65 THR THR A . n A 1 69 ILE 69 66 66 ILE ILE A . n A 1 70 THR 70 67 67 THR THR A . n A 1 71 ARG 71 68 68 ARG ARG A . n A 1 72 ALA 72 69 69 ALA ALA A . n A 1 73 ILE 73 70 70 ILE ILE A . n A 1 74 LYS 74 71 71 LYS LYS A . n A 1 75 ARG 75 72 72 ARG ARG A . n A 1 76 GLY 76 73 73 GLY GLY A . n A 1 77 ALA 77 74 74 ALA ALA A . n A 1 78 GLY 78 75 ? ? ? A . n A 1 79 SER 79 76 ? ? ? A . n A 1 80 GLY 80 77 ? ? ? A . n A 1 81 ALA 81 78 ? ? ? A . n A 1 82 GLY 82 79 ? ? ? A . n A 1 83 ASP 83 80 80 ASP ASP A . n A 1 84 ASN 84 81 81 ASN ASN A . n A 1 85 LEU 85 82 82 LEU LEU A . n A 1 86 VAL 86 83 83 VAL VAL A . n A 1 87 GLU 87 84 84 GLU GLU A . n A 1 88 VAL 88 85 85 VAL VAL A . n A 1 89 ARG 89 86 86 ARG ARG A . n A 1 90 TYR 90 87 87 TYR TYR A . n A 1 91 GLU 91 88 88 GLU GLU A . n A 1 92 GLY 92 89 89 GLY GLY A . n A 1 93 TYR 93 90 90 TYR TYR A . n A 1 94 GLY 94 91 91 GLY GLY A . n A 1 95 PRO 95 92 92 PRO PRO A . n A 1 96 SER 96 93 93 SER SER A . n A 1 97 GLY 97 94 94 GLY GLY A . n A 1 98 VAL 98 95 95 VAL VAL A . n A 1 99 ALA 99 96 96 ALA ALA A . n A 1 100 VAL 100 97 97 VAL VAL A . n A 1 101 MSE 101 98 98 MSE MSE A . n A 1 102 VAL 102 99 99 VAL VAL A . n A 1 103 ASP 103 100 100 ASP ASP A . n A 1 104 CYS 104 101 101 CYS CYS A . n A 1 105 LEU 105 102 102 LEU LEU A . n A 1 106 THR 106 103 103 THR THR A . n A 1 107 ASP 107 104 104 ASP ASP A . n A 1 108 ASN 108 105 105 ASN ASN A . n A 1 109 LYS 109 106 106 LYS LYS A . n A 1 110 ASN 110 107 107 ASN ASN A . n A 1 111 ARG 111 108 108 ARG ARG A . n A 1 112 THR 112 109 109 THR THR A . n A 1 113 VAL 113 110 110 VAL VAL A . n A 1 114 ALA 114 111 111 ALA ALA A . n A 1 115 GLU 115 112 112 GLU GLU A . n A 1 116 VAL 116 113 113 VAL VAL A . n A 1 117 ARG 117 114 114 ARG ARG A . n A 1 118 HIS 118 115 115 HIS HIS A . n A 1 119 ALA 119 116 116 ALA ALA A . n A 1 120 PHE 120 117 117 PHE PHE A . n A 1 121 SER 121 118 118 SER SER A . n A 1 122 LYS 122 119 119 LYS LYS A . n A 1 123 CYS 123 120 120 CYS CYS A . n A 1 124 ASP 124 121 121 ASP ASP A . n A 1 125 GLY 125 122 122 GLY GLY A . n A 1 126 ASN 126 123 123 ASN ASN A . n A 1 127 LEU 127 124 124 LEU LEU A . n A 1 128 GLY 128 125 125 GLY GLY A . n A 1 129 THR 129 126 126 THR THR A . n A 1 130 GLU 130 127 127 GLU GLU A . n A 1 131 GLY 131 128 128 GLY GLY A . n A 1 132 SER 132 129 129 SER SER A . n A 1 133 VAL 133 130 130 VAL VAL A . n A 1 134 ALA 134 131 131 ALA ALA A . n A 1 135 TYR 135 132 132 TYR TYR A . n A 1 136 LEU 136 133 133 LEU LEU A . n A 1 137 PHE 137 134 134 PHE PHE A . n A 1 138 LYS 138 135 135 LYS LYS A . n A 1 139 GLN 139 136 136 GLN GLN A . n A 1 140 ARG 140 137 137 ARG ARG A . n A 1 141 GLY 141 138 138 GLY GLY A . n A 1 142 LEU 142 139 139 LEU LEU A . n A 1 143 ILE 143 140 140 ILE ILE A . n A 1 144 THR 144 141 141 THR THR A . n A 1 145 PHE 145 142 142 PHE PHE A . n A 1 146 PRO 146 143 143 PRO PRO A . n A 1 147 PRO 147 144 144 PRO PRO A . n A 1 148 ASN 148 145 145 ASN ASN A . n A 1 149 SER 149 146 146 SER SER A . n A 1 150 ASP 150 147 147 ASP ASP A . n A 1 151 GLU 151 148 148 GLU GLU A . n A 1 152 GLU 152 149 149 GLU GLU A . n A 1 153 LYS 153 150 150 LYS LYS A . n A 1 154 ILE 154 151 151 ILE ILE A . n A 1 155 MSE 155 152 152 MSE MSE A . n A 1 156 GLU 156 153 153 GLU GLU A . n A 1 157 ILE 157 154 154 ILE ILE A . n A 1 158 ALA 158 155 155 ALA ALA A . n A 1 159 LEU 159 156 156 LEU LEU A . n A 1 160 GLU 160 157 157 GLU GLU A . n A 1 161 VAL 161 158 158 VAL VAL A . n A 1 162 GLY 162 159 159 GLY GLY A . n A 1 163 ALA 163 160 160 ALA ALA A . n A 1 164 GLU 164 161 161 GLU GLU A . n A 1 165 ASP 165 162 162 ASP ASP A . n A 1 166 VAL 166 163 163 VAL VAL A . n A 1 167 THR 167 164 164 THR THR A . n A 1 168 THR 168 165 165 THR THR A . n A 1 169 ASN 169 166 166 ASN ASN A . n A 1 170 ASP 170 167 167 ASP ASP A . n A 1 171 ASP 171 168 168 ASP ASP A . n A 1 172 GLY 172 169 169 GLY GLY A . n A 1 173 SER 173 170 170 SER SER A . n A 1 174 ILE 174 171 171 ILE ILE A . n A 1 175 ASP 175 172 172 ASP ASP A . n A 1 176 VAL 176 173 173 VAL VAL A . n A 1 177 THR 177 174 174 THR THR A . n A 1 178 THR 178 175 175 THR THR A . n A 1 179 LEU 179 176 176 LEU LEU A . n A 1 180 PRO 180 177 177 PRO PRO A . n A 1 181 GLU 181 178 178 GLU GLU A . n A 1 182 ASP 182 179 179 ASP ASP A . n A 1 183 PHE 183 180 180 PHE PHE A . n A 1 184 GLU 184 181 181 GLU GLU A . n A 1 185 LYS 185 182 182 LYS LYS A . n A 1 186 ILE 186 183 183 ILE ILE A . n A 1 187 ARG 187 184 184 ARG ARG A . n A 1 188 ASN 188 185 185 ASN ASN A . n A 1 189 ALA 189 186 186 ALA ALA A . n A 1 190 MSE 190 187 187 MSE MSE A . n A 1 191 LYS 191 188 188 LYS LYS A . n A 1 192 ALA 192 189 189 ALA ALA A . n A 1 193 ALA 193 190 190 ALA ALA A . n A 1 194 ASP 194 191 191 ASP ASP A . n A 1 195 LEU 195 192 192 LEU LEU A . n A 1 196 ASN 196 193 193 ASN ASN A . n A 1 197 PRO 197 194 194 PRO PRO A . n A 1 198 SER 198 195 195 SER SER A . n A 1 199 HIS 199 196 196 HIS HIS A . n A 1 200 ALA 200 197 197 ALA ALA A . n A 1 201 GLU 201 198 198 GLU GLU A . n A 1 202 VAL 202 199 199 VAL VAL A . n A 1 203 THR 203 200 200 THR THR A . n A 1 204 VAL 204 201 201 VAL VAL A . n A 1 205 LEU 205 202 202 LEU LEU A . n A 1 206 ALA 206 203 203 ALA ALA A . n A 1 207 SER 207 204 204 SER SER A . n A 1 208 THR 208 205 205 THR THR A . n A 1 209 GLU 209 206 206 GLU GLU A . n A 1 210 VAL 210 207 207 VAL VAL A . n A 1 211 GLY 211 208 208 GLY GLY A . n A 1 212 LEU 212 209 209 LEU LEU A . n A 1 213 ASP 213 210 210 ASP ASP A . n A 1 214 LYS 214 211 211 LYS LYS A . n A 1 215 ASP 215 212 212 ASP ASP A . n A 1 216 SER 216 213 213 SER SER A . n A 1 217 ALA 217 214 214 ALA ALA A . n A 1 218 GLU 218 215 215 GLU GLU A . n A 1 219 GLN 219 216 216 GLN GLN A . n A 1 220 MSE 220 217 217 MSE MSE A . n A 1 221 LEU 221 218 218 LEU LEU A . n A 1 222 ARG 222 219 219 ARG ARG A . n A 1 223 LEU 223 220 220 LEU LEU A . n A 1 224 THR 224 221 221 THR THR A . n A 1 225 GLU 225 222 222 GLU GLU A . n A 1 226 MSE 226 223 223 MSE MSE A . n A 1 227 LEU 227 224 224 LEU LEU A . n A 1 228 GLU 228 225 225 GLU GLU A . n A 1 229 ASP 229 226 226 ASP ASP A . n A 1 230 LEU 230 227 227 LEU LEU A . n A 1 231 ASP 231 228 228 ASP ASP A . n A 1 232 ASP 232 229 229 ASP ASP A . n A 1 233 VAL 233 230 230 VAL VAL A . n A 1 234 GLN 234 231 231 GLN GLN A . n A 1 235 ASN 235 232 232 ASN ASN A . n A 1 236 VAL 236 233 233 VAL VAL A . n A 1 237 TYR 237 234 234 TYR TYR A . n A 1 238 SER 238 235 235 SER SER A . n A 1 239 ASN 239 236 236 ASN ASN A . n A 1 240 ALA 240 237 237 ALA ALA A . n A 1 241 ASP 241 238 238 ASP ASP A . n A 1 242 TYR 242 239 239 TYR TYR A . n A 1 243 PRO 243 240 240 PRO PRO A . n A 1 244 GLU 244 241 241 GLU GLU A . n A 1 245 GLU 245 242 242 GLU GLU A . n A 1 246 VAL 246 243 243 VAL VAL A . n A 1 247 LEU 247 244 244 LEU LEU A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 64 A MSE 61 ? MET SELENOMETHIONINE 2 A MSE 101 A MSE 98 ? MET SELENOMETHIONINE 3 A MSE 155 A MSE 152 ? MET SELENOMETHIONINE 4 A MSE 190 A MSE 187 ? MET SELENOMETHIONINE 5 A MSE 220 A MSE 217 ? MET SELENOMETHIONINE 6 A MSE 226 A MSE 223 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-27 2 'Structure model' 1 1 2015-06-24 3 'Structure model' 1 2 2015-10-21 4 'Structure model' 1 3 2016-02-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 15.6085 7.5574 64.1781 0.1296 0.0696 0.1585 0.0453 0.0055 0.0482 2.9652 6.5775 7.1009 -0.1275 -0.1956 -1.2562 -0.0107 -0.0480 0.0744 -0.0119 0.2361 0.7032 -0.1006 -0.1333 -0.2253 'X-RAY DIFFRACTION' 2 ? refined 11.7398 18.8029 45.4252 0.1552 0.1169 0.0263 -0.0870 0.0081 0.0252 5.1337 3.0892 4.4978 -0.9477 1.2621 -0.8155 0.1459 0.1398 -0.0858 -0.1260 -0.0775 -0.0356 0.2625 0.0067 -0.0684 'X-RAY DIFFRACTION' 3 ? refined -1.9152 33.7270 66.6191 0.2072 0.0745 0.0951 0.0465 -0.0362 -0.0113 7.7967 3.6502 5.1373 1.4539 0.9521 1.5053 -0.3497 -0.2098 0.4472 0.1265 0.1634 0.2242 -0.3947 -0.0268 0.1863 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 6 ? ? A 74 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 80 ? ? A 136 ? ? ? ? 'X-RAY DIFFRACTION' 3 2 A 200 ? ? A 244 ? ? ? ? 'X-RAY DIFFRACTION' 4 3 A 137 ? ? A 199 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 SOLVE phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MSE 1 ? A MSE 4 5 1 Y 1 A ALA 2 ? A ALA 5 6 1 Y 1 A GLY 3 ? A GLY 6 7 1 Y 1 A HIS 4 ? A HIS 7 8 1 Y 1 A SER 5 ? A SER 8 9 1 Y 1 A GLY 75 ? A GLY 78 10 1 Y 1 A SER 76 ? A SER 79 11 1 Y 1 A GLY 77 ? A GLY 80 12 1 Y 1 A ALA 78 ? A ALA 81 13 1 Y 1 A GLY 79 ? A GLY 82 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 301 1 SO4 SO4 A . C 3 HOH 1 401 1 HOH HOH A . C 3 HOH 2 402 2 HOH HOH A . C 3 HOH 3 403 3 HOH HOH A . C 3 HOH 4 404 4 HOH HOH A . C 3 HOH 5 405 5 HOH HOH A . C 3 HOH 6 406 6 HOH HOH A . C 3 HOH 7 407 7 HOH HOH A . C 3 HOH 8 408 8 HOH HOH A . C 3 HOH 9 409 9 HOH HOH A . C 3 HOH 10 410 10 HOH HOH A . C 3 HOH 11 411 11 HOH HOH A . C 3 HOH 12 412 12 HOH HOH A . C 3 HOH 13 413 13 HOH HOH A . C 3 HOH 14 414 14 HOH HOH A . C 3 HOH 15 415 15 HOH HOH A . C 3 HOH 16 416 16 HOH HOH A . C 3 HOH 17 417 17 HOH HOH A . C 3 HOH 18 418 18 HOH HOH A . C 3 HOH 19 419 19 HOH HOH A . C 3 HOH 20 420 20 HOH HOH A . C 3 HOH 21 421 21 HOH HOH A . C 3 HOH 22 422 22 HOH HOH A . C 3 HOH 23 423 23 HOH HOH A . C 3 HOH 24 424 24 HOH HOH A . C 3 HOH 25 425 25 HOH HOH A . C 3 HOH 26 426 26 HOH HOH A . C 3 HOH 27 427 27 HOH HOH A . C 3 HOH 28 428 28 HOH HOH A . C 3 HOH 29 429 29 HOH HOH A . C 3 HOH 30 430 30 HOH HOH A . C 3 HOH 31 431 31 HOH HOH A . C 3 HOH 32 432 32 HOH HOH A . C 3 HOH 33 433 33 HOH HOH A . C 3 HOH 34 434 34 HOH HOH A . C 3 HOH 35 435 35 HOH HOH A . C 3 HOH 36 436 36 HOH HOH A . C 3 HOH 37 437 37 HOH HOH A . C 3 HOH 38 438 38 HOH HOH A . C 3 HOH 39 439 39 HOH HOH A . C 3 HOH 40 440 40 HOH HOH A . C 3 HOH 41 441 41 HOH HOH A . C 3 HOH 42 442 42 HOH HOH A . C 3 HOH 43 443 43 HOH HOH A . C 3 HOH 44 444 44 HOH HOH A . C 3 HOH 45 445 45 HOH HOH A . C 3 HOH 46 446 46 HOH HOH A . C 3 HOH 47 447 47 HOH HOH A . C 3 HOH 48 448 48 HOH HOH A . C 3 HOH 49 449 49 HOH HOH A . C 3 HOH 50 450 50 HOH HOH A . C 3 HOH 51 451 51 HOH HOH A . C 3 HOH 52 452 52 HOH HOH A . C 3 HOH 53 453 53 HOH HOH A . C 3 HOH 54 454 54 HOH HOH A . C 3 HOH 55 455 55 HOH HOH A . C 3 HOH 56 456 56 HOH HOH A . C 3 HOH 57 457 57 HOH HOH A . C 3 HOH 58 458 58 HOH HOH A . C 3 HOH 59 459 59 HOH HOH A . C 3 HOH 60 460 60 HOH HOH A . C 3 HOH 61 461 61 HOH HOH A . C 3 HOH 62 462 62 HOH HOH A . C 3 HOH 63 463 63 HOH HOH A . C 3 HOH 64 464 64 HOH HOH A . #