HEADER PROTEIN TRANSPORT 09-MAY-12 4F3V TITLE CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF ECCA1 ATPASE FROM ESX-1 TITLE 2 SECRETION SYSTEM OF MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESX-1 SECRETION SYSTEM PROTEIN ECCA1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-280; COMPND 5 SYNONYM: ESX CONSERVED COMPONENT A1, TYPE VII SECRETION SYSTEM COMPND 6 PROTEIN ECCA1, T7SS PROTEIN ECCA1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: ECCA1, MT3981, MTV027.03, RV3868; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TETRATRICOPEPTIDE REPEAT, TPR DOMAIN, ATPASE, PROTEIN SECRETION, KEYWDS 2 PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR K.V.KOROTKOV,T.J.EVANS REVDAT 4 28-FEB-24 4F3V 1 REMARK SEQADV LINK REVDAT 3 25-DEC-13 4F3V 1 JRNL REVDAT 2 10-JUL-13 4F3V 1 JRNL REVDAT 1 06-JUN-12 4F3V 0 JRNL AUTH J.M.WAGNER,T.J.EVANS,K.V.KOROTKOV JRNL TITL CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF ECCA1 ATPASE JRNL TITL 2 FROM THE ESX-1 SECRETION SYSTEM OF MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS. JRNL REF PROTEINS V. 82 159 2014 JRNL REFN ISSN 0887-3585 JRNL PMID 23818233 JRNL DOI 10.1002/PROT.24351 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 49226 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2525 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3192 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 171 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4135 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 453 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.11000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : -0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.378 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4249 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2784 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5789 ; 1.286 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6743 ; 1.149 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 546 ; 5.311 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;28.700 ;23.222 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 645 ;13.612 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;16.354 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 648 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4816 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 906 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 0 A 0 A 271 0 REMARK 3 0 B 0 B 271 0 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1630 4.7700 22.0060 REMARK 3 T TENSOR REMARK 3 T11: 0.0661 T22: 0.0599 REMARK 3 T33: 0.0326 T12: -0.0062 REMARK 3 T13: -0.0310 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 2.0622 L22: 4.3486 REMARK 3 L33: 3.4498 L12: 0.7570 REMARK 3 L13: 0.0804 L23: 1.0342 REMARK 3 S TENSOR REMARK 3 S11: -0.1005 S12: 0.0303 S13: 0.0624 REMARK 3 S21: -0.3086 S22: -0.0192 S23: 0.2446 REMARK 3 S31: -0.0095 S32: -0.2462 S33: 0.1197 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9250 15.8490 20.4080 REMARK 3 T TENSOR REMARK 3 T11: 0.0840 T22: 0.0456 REMARK 3 T33: 0.0163 T12: 0.0111 REMARK 3 T13: 0.0141 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.0137 L22: 2.0466 REMARK 3 L33: 0.7852 L12: 0.9748 REMARK 3 L13: -0.8115 L23: -0.9125 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: -0.0799 S13: -0.0446 REMARK 3 S21: -0.1909 S22: -0.0264 S23: -0.1085 REMARK 3 S31: 0.0285 S32: 0.0307 S33: 0.0400 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 166 A 250 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9630 17.9200 0.6690 REMARK 3 T TENSOR REMARK 3 T11: 0.1573 T22: 0.0325 REMARK 3 T33: 0.0862 T12: 0.0557 REMARK 3 T13: 0.1053 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 1.0570 L22: 2.3672 REMARK 3 L33: 3.4297 L12: -0.0069 REMARK 3 L13: -0.9453 L23: 1.5721 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 0.0685 S13: 0.0127 REMARK 3 S21: -0.3195 S22: -0.0628 S23: -0.1015 REMARK 3 S31: -0.1218 S32: -0.0694 S33: 0.0447 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 251 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0000 35.6130 8.1420 REMARK 3 T TENSOR REMARK 3 T11: 0.1864 T22: 0.0128 REMARK 3 T33: 0.0797 T12: 0.0313 REMARK 3 T13: 0.0636 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 4.5923 L22: 4.3421 REMARK 3 L33: 4.0000 L12: -2.7616 REMARK 3 L13: -2.1536 L23: 1.1309 REMARK 3 S TENSOR REMARK 3 S11: 0.2697 S12: 0.0691 S13: 0.4151 REMARK 3 S21: -0.4482 S22: -0.1955 S23: -0.3685 REMARK 3 S31: -0.2610 S32: -0.1021 S33: -0.0742 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 7 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5170 -3.2590 33.2810 REMARK 3 T TENSOR REMARK 3 T11: 0.1604 T22: 0.1575 REMARK 3 T33: 0.1931 T12: 0.0478 REMARK 3 T13: 0.1062 T23: -0.0529 REMARK 3 L TENSOR REMARK 3 L11: 41.3256 L22: 41.2172 REMARK 3 L33: 49.4021 L12: 23.9727 REMARK 3 L13: -30.3476 L23: -14.4953 REMARK 3 S TENSOR REMARK 3 S11: 0.7942 S12: -0.2158 S13: -0.2240 REMARK 3 S21: -1.0659 S22: -0.0495 S23: -1.8140 REMARK 3 S31: -0.7760 S32: 1.7491 S33: -0.7447 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 78 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1780 2.4110 41.5270 REMARK 3 T TENSOR REMARK 3 T11: 0.0349 T22: 0.0487 REMARK 3 T33: 0.0378 T12: 0.0141 REMARK 3 T13: -0.0110 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.3917 L22: 2.9617 REMARK 3 L33: 2.0280 L12: -0.2489 REMARK 3 L13: 0.4776 L23: -0.0982 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: 0.0283 S13: -0.0599 REMARK 3 S21: 0.1991 S22: 0.0075 S23: -0.1692 REMARK 3 S31: 0.0860 S32: 0.0758 S33: -0.0162 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 79 B 204 REMARK 3 ORIGIN FOR THE GROUP (A): -12.9410 16.8940 48.5410 REMARK 3 T TENSOR REMARK 3 T11: 0.0348 T22: 0.0610 REMARK 3 T33: 0.0500 T12: -0.0006 REMARK 3 T13: 0.0018 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.8801 L22: 1.0104 REMARK 3 L33: 2.6441 L12: -1.0977 REMARK 3 L13: -1.6428 L23: 1.3419 REMARK 3 S TENSOR REMARK 3 S11: 0.0826 S12: 0.1080 S13: 0.0094 REMARK 3 S21: -0.0676 S22: -0.0571 S23: 0.0491 REMARK 3 S31: -0.0124 S32: -0.1077 S33: -0.0255 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 205 B 272 REMARK 3 ORIGIN FOR THE GROUP (A): -14.9070 20.0540 66.7650 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.0604 REMARK 3 T33: 0.0848 T12: 0.0004 REMARK 3 T13: 0.0338 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.2096 L22: 2.9507 REMARK 3 L33: 2.6586 L12: 0.2474 REMARK 3 L13: -1.5319 L23: -1.5107 REMARK 3 S TENSOR REMARK 3 S11: -0.0616 S12: -0.2145 S13: 0.0279 REMARK 3 S21: 0.1319 S22: 0.0762 S23: -0.2885 REMARK 3 S31: -0.1242 S32: 0.2278 S33: -0.0146 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 4F3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49283 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.79300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE PH 5.6, 1.0M REMARK 280 LITHIUM SULFATE, 0.5M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.61500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.85500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.25500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.85500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.61500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.25500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 274 REMARK 465 ASP A 275 REMARK 465 ASN A 276 REMARK 465 SER A 277 REMARK 465 GLY A 278 REMARK 465 ARG A 279 REMARK 465 GLU A 280 REMARK 465 GLY B -1 REMARK 465 VAL B 273 REMARK 465 THR B 274 REMARK 465 ASP B 275 REMARK 465 ASN B 276 REMARK 465 SER B 277 REMARK 465 GLY B 278 REMARK 465 ARG B 279 REMARK 465 GLU B 280 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 133 CG HIS B 133 CD2 0.058 REMARK 500 HIS B 236 CG HIS B 236 CD2 0.057 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 19 105.55 -162.70 REMARK 500 ASN A 115 70.32 -102.17 REMARK 500 ALA A 129 70.13 28.52 REMARK 500 THR A 255 -169.58 -129.17 REMARK 500 SER B 19 106.55 -160.25 REMARK 500 ASN B 115 72.70 -101.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 128 ALA A 129 123.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SM A1001 SM REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 109 O REMARK 620 2 HOH A1311 O 100.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SM B1001 SM REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 109 O REMARK 620 2 HOH B1250 O 134.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SM B1002 SM REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 109 O REMARK 620 2 GLU B 110 OE2 106.2 REMARK 620 3 GLU B 110 N 40.4 81.0 REMARK 620 4 HOH B1222 O 133.4 92.3 105.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SM A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SM B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SM B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1004 DBREF 4F3V A 1 280 UNP O69733 ECCA1_MYCTU 1 280 DBREF 4F3V B 1 280 UNP O69733 ECCA1_MYCTU 1 280 SEQADV 4F3V GLY A -1 UNP O69733 EXPRESSION TAG SEQADV 4F3V HIS A 0 UNP O69733 EXPRESSION TAG SEQADV 4F3V GLY B -1 UNP O69733 EXPRESSION TAG SEQADV 4F3V HIS B 0 UNP O69733 EXPRESSION TAG SEQRES 1 A 282 GLY HIS MET THR ASP ARG LEU ALA SER LEU PHE GLU SER SEQRES 2 A 282 ALA VAL SER MET LEU PRO MET SER GLU ALA ARG SER LEU SEQRES 3 A 282 ASP LEU PHE THR GLU ILE THR ASN TYR ASP GLU SER ALA SEQRES 4 A 282 CYS ASP ALA TRP ILE GLY ARG ILE ARG CYS GLY ASP THR SEQRES 5 A 282 ASP ARG VAL THR LEU PHE ARG ALA TRP TYR SER ARG ARG SEQRES 6 A 282 ASN PHE GLY GLN LEU SER GLY SER VAL GLN ILE SER MET SEQRES 7 A 282 SER THR LEU ASN ALA ARG ILE ALA ILE GLY GLY LEU TYR SEQRES 8 A 282 GLY ASP ILE THR TYR PRO VAL THR SER PRO LEU ALA ILE SEQRES 9 A 282 THR MET GLY PHE ALA ALA CYS GLU ALA ALA GLN GLY ASN SEQRES 10 A 282 TYR ALA ASP ALA MET GLU ALA LEU GLU ALA ALA PRO VAL SEQRES 11 A 282 ALA GLY SER GLU HIS LEU VAL ALA TRP MET LYS ALA VAL SEQRES 12 A 282 VAL TYR GLY ALA ALA GLU ARG TRP THR ASP VAL ILE ASP SEQRES 13 A 282 GLN VAL LYS SER ALA GLY LYS TRP PRO ASP LYS PHE LEU SEQRES 14 A 282 ALA GLY ALA ALA GLY VAL ALA HIS GLY VAL ALA ALA ALA SEQRES 15 A 282 ASN LEU ALA LEU PHE THR GLU ALA GLU ARG ARG LEU THR SEQRES 16 A 282 GLU ALA ASN ASP SER PRO ALA GLY GLU ALA CYS ALA ARG SEQRES 17 A 282 ALA ILE ALA TRP TYR LEU ALA MET ALA ARG ARG SER GLN SEQRES 18 A 282 GLY ASN GLU SER ALA ALA VAL ALA LEU LEU GLU TRP LEU SEQRES 19 A 282 GLN THR THR HIS PRO GLU PRO LYS VAL ALA ALA ALA LEU SEQRES 20 A 282 LYS ASP PRO SER TYR ARG LEU LYS THR THR THR ALA GLU SEQRES 21 A 282 GLN ILE ALA SER ARG ALA ASP PRO TRP ASP PRO GLY SER SEQRES 22 A 282 VAL VAL THR ASP ASN SER GLY ARG GLU SEQRES 1 B 282 GLY HIS MET THR ASP ARG LEU ALA SER LEU PHE GLU SER SEQRES 2 B 282 ALA VAL SER MET LEU PRO MET SER GLU ALA ARG SER LEU SEQRES 3 B 282 ASP LEU PHE THR GLU ILE THR ASN TYR ASP GLU SER ALA SEQRES 4 B 282 CYS ASP ALA TRP ILE GLY ARG ILE ARG CYS GLY ASP THR SEQRES 5 B 282 ASP ARG VAL THR LEU PHE ARG ALA TRP TYR SER ARG ARG SEQRES 6 B 282 ASN PHE GLY GLN LEU SER GLY SER VAL GLN ILE SER MET SEQRES 7 B 282 SER THR LEU ASN ALA ARG ILE ALA ILE GLY GLY LEU TYR SEQRES 8 B 282 GLY ASP ILE THR TYR PRO VAL THR SER PRO LEU ALA ILE SEQRES 9 B 282 THR MET GLY PHE ALA ALA CYS GLU ALA ALA GLN GLY ASN SEQRES 10 B 282 TYR ALA ASP ALA MET GLU ALA LEU GLU ALA ALA PRO VAL SEQRES 11 B 282 ALA GLY SER GLU HIS LEU VAL ALA TRP MET LYS ALA VAL SEQRES 12 B 282 VAL TYR GLY ALA ALA GLU ARG TRP THR ASP VAL ILE ASP SEQRES 13 B 282 GLN VAL LYS SER ALA GLY LYS TRP PRO ASP LYS PHE LEU SEQRES 14 B 282 ALA GLY ALA ALA GLY VAL ALA HIS GLY VAL ALA ALA ALA SEQRES 15 B 282 ASN LEU ALA LEU PHE THR GLU ALA GLU ARG ARG LEU THR SEQRES 16 B 282 GLU ALA ASN ASP SER PRO ALA GLY GLU ALA CYS ALA ARG SEQRES 17 B 282 ALA ILE ALA TRP TYR LEU ALA MET ALA ARG ARG SER GLN SEQRES 18 B 282 GLY ASN GLU SER ALA ALA VAL ALA LEU LEU GLU TRP LEU SEQRES 19 B 282 GLN THR THR HIS PRO GLU PRO LYS VAL ALA ALA ALA LEU SEQRES 20 B 282 LYS ASP PRO SER TYR ARG LEU LYS THR THR THR ALA GLU SEQRES 21 B 282 GLN ILE ALA SER ARG ALA ASP PRO TRP ASP PRO GLY SER SEQRES 22 B 282 VAL VAL THR ASP ASN SER GLY ARG GLU HET SM A1001 1 HET SO4 A1002 5 HET SO4 A1003 5 HET SO4 A1004 5 HET SO4 A1005 5 HET SM B1001 1 HET SM B1002 1 HET SO4 B1003 5 HET SO4 B1004 5 HETNAM SM SAMARIUM (III) ION HETNAM SO4 SULFATE ION FORMUL 3 SM 3(SM 3+) FORMUL 4 SO4 6(O4 S 2-) FORMUL 12 HOH *453(H2 O) HELIX 1 1 GLY A -1 LEU A 16 1 18 HELIX 2 2 SER A 19 ASP A 34 1 16 HELIX 3 3 ALA A 37 CYS A 47 1 11 HELIX 4 4 ASP A 51 SER A 61 1 11 HELIX 5 5 ARG A 62 PHE A 65 5 4 HELIX 6 6 GLY A 66 SER A 71 1 6 HELIX 7 7 SER A 75 ASN A 80 5 6 HELIX 8 8 SER A 98 GLY A 114 1 17 HELIX 9 9 ASN A 115 GLU A 124 1 10 HELIX 10 10 SER A 131 ALA A 146 1 16 HELIX 11 11 ARG A 148 LYS A 157 1 10 HELIX 12 12 SER A 158 TRP A 162 5 5 HELIX 13 13 ASP A 164 LEU A 182 1 19 HELIX 14 14 LEU A 184 ASP A 197 1 14 HELIX 15 15 CYS A 204 GLY A 220 1 17 HELIX 16 16 ASN A 221 HIS A 236 1 16 HELIX 17 17 GLU A 238 ASP A 247 1 10 HELIX 18 18 THR A 256 SER A 262 1 7 HELIX 19 19 ASP A 268 VAL A 272 5 5 HELIX 20 20 MET B 1 LEU B 16 1 16 HELIX 21 21 SER B 19 ASP B 34 1 16 HELIX 22 22 ALA B 37 CYS B 47 1 11 HELIX 23 23 ASP B 51 SER B 61 1 11 HELIX 24 24 ARG B 62 PHE B 65 5 4 HELIX 25 25 GLY B 66 SER B 71 1 6 HELIX 26 26 SER B 75 ASN B 80 1 6 HELIX 27 27 SER B 98 GLY B 114 1 17 HELIX 28 28 ASN B 115 ALA B 125 1 11 HELIX 29 29 SER B 131 ALA B 146 1 16 HELIX 30 30 ARG B 148 LYS B 157 1 10 HELIX 31 31 SER B 158 TRP B 162 5 5 HELIX 32 32 ASP B 164 LEU B 182 1 19 HELIX 33 33 LEU B 184 ASP B 197 1 14 HELIX 34 34 CYS B 204 GLY B 220 1 17 HELIX 35 35 ASN B 221 HIS B 236 1 16 HELIX 36 36 GLU B 238 ASP B 247 1 10 HELIX 37 37 THR B 256 SER B 262 1 7 HELIX 38 38 ASP B 268 VAL B 272 5 5 SHEET 1 A 2 ARG A 82 ALA A 84 0 SHEET 2 A 2 THR A 93 PRO A 95 -1 O TYR A 94 N ILE A 83 SHEET 1 B 2 ARG B 82 ALA B 84 0 SHEET 2 B 2 THR B 93 PRO B 95 -1 O TYR B 94 N ILE B 83 LINK O CYS A 109 SM SM A1001 1555 1555 3.28 LINK SM SM A1001 O HOH A1311 1555 1555 3.08 LINK O CYS B 109 SM SM B1001 1555 1555 3.27 LINK O CYS B 109 SM SM B1002 1555 1555 3.21 LINK OE2 GLU B 110 SM SM B1002 1555 1555 2.63 LINK N GLU B 110 SM SM B1002 1555 1555 3.26 LINK SM SM B1001 O HOH B1250 1555 1555 3.28 LINK SM SM B1002 O HOH B1222 1555 1555 3.06 SITE 1 AC1 3 CYS A 109 GLN A 113 HOH A1311 SITE 1 AC2 2 ARG A 82 PRO A 95 SITE 1 AC3 3 ARG A 190 ARG A 191 HOH A1312 SITE 1 AC4 3 ARG A 148 TRP A 267 HOH A1216 SITE 1 AC5 6 ALA A 183 PHE A 185 THR A 186 GLN A 219 SITE 2 AC5 6 HOH A1134 HOH A1273 SITE 1 AC6 2 CYS B 109 GLN B 113 SITE 1 AC7 4 CYS B 109 GLU B 110 GLN B 113 HOH B1222 SITE 1 AC8 9 ARG A 62 ARG A 63 ARG B 62 ARG B 63 SITE 2 AC8 9 ALA B 125 ALA B 126 HOH B1228 HOH B1315 SITE 3 AC8 9 HOH B1320 SITE 1 AC9 3 SER B 19 GLU B 20 ALA B 21 CRYST1 73.230 92.510 105.710 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013656 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009460 0.00000