HEADER TRANSFERASE/DNA 11-MAY-12 4F4X TITLE Y-FAMILY DNA POLYMERASE CHIMERA DBH-DPO4-DPO4 #2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*GP*GP*GP*C)-3'); COMPND 9 CHAIN: P; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: PRIMER DNA; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*TP*TP*AP*CP*GP*CP*CP*CP*TP*GP*AP*TP*CP*AP*GP*TP*GP*CP*C)-3'); COMPND 15 CHAIN: T; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: TEMPLATE DNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS ACIDOCALDARIUS, SULFOLOBUS SOURCE 3 SOLFATARICUS; SOURCE 4 ORGANISM_TAXID: 330779, 273057; SOURCE 5 STRAIN: ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770; SOURCE 6 GENE: DBH, DPO4 (S. SOLFATARICUS) AND DBH (S. ACIDOCALDARIUS), SOURCE 7 SACI_0554, DPO4, SSO24 48; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BLR(DE3)PLYSS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PKKT7-H; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: CHEMICALLY SYNTHESIZED; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS Y-FAMILY POLYMERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.PATA,R.C.WILSON REVDAT 4 28-FEB-24 4F4X 1 REMARK SEQADV LINK REVDAT 3 16-AUG-17 4F4X 1 SOURCE REMARK REVDAT 2 13-FEB-13 4F4X 1 JRNL REVDAT 1 02-JAN-13 4F4X 0 JRNL AUTH R.C.WILSON,M.A.JACKSON,J.D.PATA JRNL TITL Y-FAMILY POLYMERASE CONFORMATION IS A MAJOR DETERMINANT OF JRNL TITL 2 FIDELITY AND TRANSLESION SPECIFICITY. JRNL REF STRUCTURE V. 21 20 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23245850 JRNL DOI 10.1016/J.STR.2012.11.005 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 35101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7385 - 4.8127 1.00 2747 143 0.1968 0.1880 REMARK 3 2 4.8127 - 3.8225 1.00 2630 142 0.1717 0.2088 REMARK 3 3 3.8225 - 3.3401 1.00 2587 138 0.1918 0.2370 REMARK 3 4 3.3401 - 3.0350 1.00 2597 137 0.2020 0.2273 REMARK 3 5 3.0350 - 2.8177 1.00 2551 133 0.2085 0.2561 REMARK 3 6 2.8177 - 2.6516 1.00 2557 136 0.2271 0.2639 REMARK 3 7 2.6516 - 2.5189 1.00 2538 137 0.2426 0.2747 REMARK 3 8 2.5189 - 2.4093 1.00 2551 132 0.2716 0.3352 REMARK 3 9 2.4093 - 2.3166 1.00 2557 135 0.2860 0.3744 REMARK 3 10 2.3166 - 2.2367 1.00 2527 129 0.3390 0.4182 REMARK 3 11 2.2367 - 2.1668 0.99 2523 135 0.3481 0.3572 REMARK 3 12 2.1668 - 2.1049 0.99 2509 132 0.3643 0.3878 REMARK 3 13 2.1049 - 2.0495 0.98 2467 131 0.3713 0.4169 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 58.76 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.72860 REMARK 3 B22 (A**2) : -4.71880 REMARK 3 B33 (A**2) : -8.00980 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3584 REMARK 3 ANGLE : 1.323 4980 REMARK 3 CHIRALITY : 0.072 569 REMARK 3 PLANARITY : 0.006 521 REMARK 3 DIHEDRAL : 18.268 1456 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN P AND RESID 1:14 ) OR ( CHAIN T AND RESID REMARK 3 2:19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4215 -28.0889 -1.5257 REMARK 3 T TENSOR REMARK 3 T11: 0.3229 T22: 0.1559 REMARK 3 T33: 0.1617 T12: -0.1363 REMARK 3 T13: 0.0887 T23: 0.1780 REMARK 3 L TENSOR REMARK 3 L11: 0.0355 L22: 0.0044 REMARK 3 L33: 0.0383 L12: -0.0020 REMARK 3 L13: 0.0368 L23: 0.0004 REMARK 3 S TENSOR REMARK 3 S11: 0.0445 S12: 0.0420 S13: -0.0697 REMARK 3 S21: -0.0302 S22: -0.0136 S23: 0.0676 REMARK 3 S31: 0.0246 S32: 0.0148 S33: 0.0778 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3512 -7.7427 -19.0497 REMARK 3 T TENSOR REMARK 3 T11: 0.1324 T22: 0.1727 REMARK 3 T33: 0.2112 T12: 0.0059 REMARK 3 T13: -0.0219 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 0.0634 L22: 0.0290 REMARK 3 L33: 0.0442 L12: -0.0394 REMARK 3 L13: 0.0445 L23: -0.0330 REMARK 3 S TENSOR REMARK 3 S11: 0.0805 S12: 0.0644 S13: 0.0765 REMARK 3 S21: -0.1826 S22: -0.0852 S23: 0.1223 REMARK 3 S31: -0.0058 S32: 0.1082 S33: -0.0039 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 169:231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9213 -34.3538 -17.5807 REMARK 3 T TENSOR REMARK 3 T11: 0.3284 T22: 0.3003 REMARK 3 T33: 0.4072 T12: -0.1140 REMARK 3 T13: 0.0275 T23: -0.1131 REMARK 3 L TENSOR REMARK 3 L11: 0.0052 L22: 0.0091 REMARK 3 L33: 0.0018 L12: 0.0064 REMARK 3 L13: 0.0034 L23: 0.0037 REMARK 3 S TENSOR REMARK 3 S11: 0.0322 S12: 0.0238 S13: -0.0498 REMARK 3 S21: 0.0050 S22: 0.0144 S23: 0.0071 REMARK 3 S31: 0.0517 S32: -0.0003 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 232:246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9441 -19.1376 -4.0459 REMARK 3 T TENSOR REMARK 3 T11: 0.2428 T22: 0.3220 REMARK 3 T33: 0.2156 T12: -0.0654 REMARK 3 T13: 0.0491 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.0019 L22: -0.0002 REMARK 3 L33: 0.0020 L12: 0.0000 REMARK 3 L13: -0.0027 L23: 0.0006 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: -0.0015 S13: -0.0033 REMARK 3 S21: 0.0160 S22: -0.0074 S23: 0.0235 REMARK 3 S31: 0.0240 S32: -0.0009 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 247:342 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9992 -17.8037 2.4849 REMARK 3 T TENSOR REMARK 3 T11: 0.1852 T22: 0.2166 REMARK 3 T33: 0.1826 T12: 0.0208 REMARK 3 T13: -0.0263 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.0112 L22: 0.0132 REMARK 3 L33: 0.0106 L12: 0.0049 REMARK 3 L13: 0.0017 L23: -0.0107 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: 0.0143 S13: 0.0167 REMARK 3 S21: 0.1065 S22: -0.0675 S23: -0.0430 REMARK 3 S31: -0.0481 S32: 0.0523 S33: -0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4F4X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072459. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.33300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER IN PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG-3350, 100 MM CA(OAC)2, 100 MM REMARK 280 MES/TRIS, 2.5% GLYCEROL, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 50.56100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.15300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.56100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.15300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 343 REMARK 465 ALA A 344 REMARK 465 ILE A 345 REMARK 465 GLY A 346 REMARK 465 LEU A 347 REMARK 465 ASP A 348 REMARK 465 LYS A 349 REMARK 465 PHE A 350 REMARK 465 PHE A 351 REMARK 465 ASP A 352 REMARK 465 THR A 353 REMARK 465 GLY A 354 REMARK 465 GLY A 355 REMARK 465 HIS A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 DT T 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH T 132 O HOH T 133 1.95 REMARK 500 O2 DC T 7 O HOH T 129 2.05 REMARK 500 O THR A 170 O HOH A 610 2.06 REMARK 500 O HOH A 597 O HOH A 604 2.13 REMARK 500 O HOH P 211 O HOH P 230 2.14 REMARK 500 OP1 DT P 9 O HOH P 231 2.14 REMARK 500 O ARG A 280 O HOH A 523 2.14 REMARK 500 N3 DG P 11 O HOH P 214 2.16 REMARK 500 OD2 ASP A 157 O HOH A 566 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG P 2 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 DG P 2 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA P 4 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC P 10 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 DC P 10 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG P 12 C1' - O4' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG P 12 C3' - C2' - C1' ANGL. DEV. = -6.5 DEGREES REMARK 500 DG P 12 O4' - C1' - N9 ANGL. DEV. = 6.5 DEGREES REMARK 500 DG P 13 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DG P 13 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DG P 13 O4' - C1' - N9 ANGL. DEV. = -5.7 DEGREES REMARK 500 DT T 2 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG T 5 O4' - C1' - N9 ANGL. DEV. = -7.9 DEGREES REMARK 500 DC T 6 O5' - C5' - C4' ANGL. DEV. = -5.3 DEGREES REMARK 500 DT T 9 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG T 10 O5' - P - OP1 ANGL. DEV. = -8.0 DEGREES REMARK 500 DG T 10 C5' - C4' - O4' ANGL. DEV. = 6.7 DEGREES REMARK 500 DG T 10 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 DC T 13 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT T 16 O4' - C4' - C3' ANGL. DEV. = -3.6 DEGREES REMARK 500 DT T 16 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 53.19 29.60 REMARK 500 THR A 37 -162.22 -124.32 REMARK 500 SER A 103 -177.72 -173.28 REMARK 500 ASN A 235 19.21 -149.70 REMARK 500 ASP A 278 -105.58 60.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD2 REMARK 620 2 PHE A 8 O 88.1 REMARK 620 3 ASP A 105 OD2 115.3 81.1 REMARK 620 4 ASP A 105 OD1 75.7 102.5 46.1 REMARK 620 5 DCP A 404 O1B 165.3 90.3 78.8 118.9 REMARK 620 6 DCP A 404 O3G 85.7 103.1 158.8 147.6 80.4 REMARK 620 7 DCP A 404 O2A 107.9 164.0 92.6 82.9 74.1 77.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 ASP A 105 OD1 89.3 REMARK 620 3 GLU A 106 OE1 79.0 99.0 REMARK 620 4 DCP A 404 O2A 110.3 85.2 170.0 REMARK 620 5 HOH A 537 O 85.0 159.3 99.5 78.2 REMARK 620 6 DC P 14 OP1 168.4 99.7 92.2 78.1 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 295 OD2 REMARK 620 2 ASP A 295 OD1 43.0 REMARK 620 3 DC P 10 OP2 106.1 74.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH P 204 O REMARK 620 2 HOH P 205 O 75.1 REMARK 620 3 HOH P 214 O 83.7 76.9 REMARK 620 4 HOH T 130 O 145.9 71.3 93.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F4W RELATED DB: PDB REMARK 900 RELATED ID: 4F4Y RELATED DB: PDB REMARK 900 RELATED ID: 4F4Z RELATED DB: PDB REMARK 900 RELATED ID: 4F50 RELATED DB: PDB DBREF 4F4X A 1 231 UNP Q4JB80 DPO4_SULAC 1 231 DBREF 4F4X A 232 353 UNP Q97W02 DPO4_SULSO 231 352 DBREF 4F4X P 1 14 PDB 4F4X 4F4X 1 14 DBREF 4F4X T 1 19 PDB 4F4X 4F4X 1 19 SEQADV 4F4X GLY A 354 UNP Q97W02 EXPRESSION TAG SEQADV 4F4X GLY A 355 UNP Q97W02 EXPRESSION TAG SEQADV 4F4X HIS A 356 UNP Q97W02 EXPRESSION TAG SEQADV 4F4X HIS A 357 UNP Q97W02 EXPRESSION TAG SEQADV 4F4X HIS A 358 UNP Q97W02 EXPRESSION TAG SEQADV 4F4X HIS A 359 UNP Q97W02 EXPRESSION TAG SEQADV 4F4X HIS A 360 UNP Q97W02 EXPRESSION TAG SEQADV 4F4X HIS A 361 UNP Q97W02 EXPRESSION TAG SEQRES 1 A 361 MET ILE VAL ILE PHE VAL ASP PHE ASP TYR PHE PHE ALA SEQRES 2 A 361 GLN VAL GLU GLU VAL LEU ASN PRO GLN TYR LYS GLY LYS SEQRES 3 A 361 PRO LEU VAL VAL CYS VAL TYR SER GLY ARG THR LYS THR SEQRES 4 A 361 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 361 LEU GLY VAL LYS ALA GLY MET PRO ILE ILE LYS ALA MET SEQRES 6 A 361 GLN ILE ALA PRO SER ALA ILE TYR VAL PRO MET ARG LYS SEQRES 7 A 361 PRO ILE TYR GLU ALA PHE SER ASN ARG ILE MET ASN LEU SEQRES 8 A 361 LEU ASN LYS HIS ALA ASP LYS ILE GLU VAL ALA SER ILE SEQRES 9 A 361 ASP GLU ALA TYR LEU ASP VAL THR ASN LYS VAL GLU GLY SEQRES 10 A 361 ASN PHE GLU ASN GLY ILE GLU LEU ALA ARG LYS ILE LYS SEQRES 11 A 361 GLN GLU ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL SEQRES 12 A 361 GLY VAL ALA PRO ASN LYS ILE LEU ALA LYS ILE ILE ALA SEQRES 13 A 361 ASP LYS SER LYS PRO ASN GLY LEU GLY VAL ILE ARG PRO SEQRES 14 A 361 THR GLU VAL GLN ASP PHE LEU ASN GLU LEU ASP ILE ASP SEQRES 15 A 361 GLU ILE PRO GLY ILE GLY SER VAL LEU ALA ARG ARG LEU SEQRES 16 A 361 ASN GLU LEU GLY ILE GLN LYS LEU ARG ASP ILE LEU SER SEQRES 17 A 361 LYS ASN TYR ASN GLU LEU GLU LYS ILE THR GLY LYS ALA SEQRES 18 A 361 LYS ALA LEU TYR LEU LEU LYS LEU ALA GLN ASP GLU TYR SEQRES 19 A 361 ASN GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY SEQRES 20 A 361 ARG ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU SEQRES 21 A 361 GLU ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER SEQRES 22 A 361 TYR TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS SEQRES 23 A 361 VAL VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG SEQRES 24 A 361 GLY ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA SEQRES 25 A 361 TYR SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU SEQRES 26 A 361 GLU ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SEQRES 27 A 361 SER LYS PHE ILE GLU ALA ILE GLY LEU ASP LYS PHE PHE SEQRES 28 A 361 ASP THR GLY GLY HIS HIS HIS HIS HIS HIS SEQRES 1 P 14 DG DG DC DA DC DT DG DA DT DC DG DG DG SEQRES 2 P 14 DC SEQRES 1 T 19 DT DT DA DC DG DC DC DC DT DG DA DT DC SEQRES 2 T 19 DA DG DT DG DC DC HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET DCP A 404 28 HET CA P 101 1 HETNAM CA CALCIUM ION HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE FORMUL 4 CA 4(CA 2+) FORMUL 7 DCP C9 H16 N3 O13 P3 FORMUL 9 HOH *186(H2 O) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 PRO A 21 LYS A 24 5 4 HELIX 3 3 ASN A 47 LEU A 53 1 7 HELIX 4 4 PRO A 60 ALA A 68 1 9 HELIX 5 5 ARG A 77 LYS A 94 1 18 HELIX 6 6 ASN A 118 LYS A 138 1 21 HELIX 7 7 ASN A 148 SER A 159 1 12 HELIX 8 8 ARG A 168 THR A 170 5 3 HELIX 9 9 GLU A 171 ASN A 177 1 7 HELIX 10 10 ASP A 180 ILE A 184 5 5 HELIX 11 11 GLY A 188 LEU A 198 1 11 HELIX 12 12 LYS A 202 LYS A 209 5 8 HELIX 13 13 ASN A 210 GLY A 219 1 10 HELIX 14 14 GLY A 219 GLN A 231 1 13 HELIX 15 15 ASN A 258 ASP A 278 1 21 HELIX 16 16 SER A 308 ASP A 327 1 20 SHEET 1 A 5 LYS A 98 SER A 103 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N ILE A 4 O LEU A 109 SHEET 4 A 5 VAL A 141 ALA A 146 -1 O GLY A 144 N PHE A 5 SHEET 5 A 5 LEU A 164 VAL A 166 1 O GLY A 165 N VAL A 143 SHEET 1 B 3 GLY A 41 ALA A 46 0 SHEET 2 B 3 LEU A 28 TYR A 33 -1 N VAL A 32 O ALA A 42 SHEET 3 B 3 ILE A 72 PRO A 75 1 O VAL A 74 N CYS A 31 SHEET 1 C 4 SER A 245 SER A 256 0 SHEET 2 C 4 ILE A 331 PHE A 341 -1 O PHE A 338 N ILE A 246 SHEET 3 C 4 PRO A 282 THR A 291 -1 N VAL A 290 O ARG A 332 SHEET 4 C 4 ILE A 296 THR A 302 -1 O VAL A 297 N ALA A 289 LINK OD2 ASP A 7 CA CA A 402 1555 1555 2.55 LINK OD1 ASP A 7 CA CA A 403 1555 1555 2.79 LINK O PHE A 8 CA CA A 402 1555 1555 2.51 LINK OD2 ASP A 105 CA CA A 402 1555 1555 2.71 LINK OD1 ASP A 105 CA CA A 402 1555 1555 2.83 LINK OD1 ASP A 105 CA CA A 403 1555 1555 2.70 LINK OE1 GLU A 106 CA CA A 403 1555 1555 2.62 LINK OD2 ASP A 295 CA CA A 401 1555 1555 2.96 LINK OD1 ASP A 295 CA CA A 401 1555 1555 3.06 LINK CA CA A 401 OP2 DC P 10 1555 1555 2.82 LINK CA CA A 402 O1B DCP A 404 1555 1555 2.60 LINK CA CA A 402 O3G DCP A 404 1555 1555 2.61 LINK CA CA A 402 O2A DCP A 404 1555 1555 2.62 LINK CA CA A 403 O2A DCP A 404 1555 1555 2.65 LINK CA CA A 403 O HOH A 537 1555 1555 2.32 LINK CA CA A 403 OP1 DC P 14 1555 1555 2.54 LINK CA CA P 101 O HOH P 204 1555 1555 2.60 LINK CA CA P 101 O HOH P 205 1555 1555 2.77 LINK CA CA P 101 O HOH P 214 1555 1555 2.74 LINK CA CA P 101 O HOH T 130 1555 1555 2.61 CISPEP 1 LYS A 160 PRO A 161 0 -2.58 SITE 1 AC1 2 ASP A 295 DC P 10 SITE 1 AC2 5 ASP A 7 PHE A 8 ASP A 105 CA A 403 SITE 2 AC2 5 DCP A 404 SITE 1 AC3 7 ASP A 7 ASP A 105 GLU A 106 CA A 402 SITE 2 AC3 7 DCP A 404 HOH A 537 DC P 14 SITE 1 AC4 21 ASP A 7 PHE A 8 ASP A 9 TYR A 10 SITE 2 AC4 21 PHE A 11 PHE A 12 ALA A 44 THR A 45 SITE 3 AC4 21 TYR A 48 ARG A 51 ASP A 105 LYS A 160 SITE 4 AC4 21 CA A 402 CA A 403 HOH A 511 HOH A 520 SITE 5 AC4 21 HOH A 531 HOH A 548 DG P 13 DC P 14 SITE 6 AC4 21 DG T 5 SITE 1 AC5 4 HOH P 204 HOH P 205 HOH P 214 HOH T 130 CRYST1 101.122 102.306 52.879 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009889 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009775 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018911 0.00000