data_4F5E # _entry.id 4F5E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4F5E RCSB RCSB072476 WWPDB D_1000072476 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4F5D _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4F5E _pdbx_database_status.recvd_initial_deposition_date 2012-05-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Huang, Y.H.' 1 'Liu, X.Y.' 2 'Su, X.D.' 3 # _citation.id primary _citation.title 'The structural basis for the sensing and binding of cyclic di-GMP by STING' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 19 _citation.page_first 728 _citation.page_last 730 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22728659 _citation.pdbx_database_id_DOI 10.1038/nsmb.2333 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Huang, Y.H.' 1 primary 'Liu, X.Y.' 2 primary 'Du, X.X.' 3 primary 'Jiang, Z.F.' 4 primary 'Su, X.D.' 5 # _cell.entry_id 4F5E _cell.length_a 60.820 _cell.length_b 60.820 _cell.length_c 120.200 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4F5E _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transmembrane protein 173' 28623.375 1 ? G230A 'UNP residues 141-379' ? 2 non-polymer syn '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 238.305 1 ? ? ? ? 3 water nat water 18.015 31 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Endoplasmic reticulum interferon stimulator, ERIS, Mediator of IRF3 activation, hMITA, Stimulator of interferon genes protein, hSTING ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMASMTGGMGRGSMMPAEISAVCEKGNFNVAHGLAWSYYIGYLRLILPELQARIRTYNQHYNNLLRGAVSQRLYILLP LDCGVPDNLSMADPNIRFLDKLPQQTADRAGIKDRVYSNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSRED RLEQAKLFCRTLEDILADAPESQNNCRLIAYQEPADDSSFSLSQEVLRHLRQEEKEEVTVGSLKTSAVPSTSTMSQEPEL LISGMEKPLPLRTDFS ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMASMTGGMGRGSMMPAEISAVCEKGNFNVAHGLAWSYYIGYLRLILPELQARIRTYNQHYNNLLRGAVSQRLYILLP LDCGVPDNLSMADPNIRFLDKLPQQTADRAGIKDRVYSNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSRED RLEQAKLFCRTLEDILADAPESQNNCRLIAYQEPADDSSFSLSQEVLRHLRQEEKEEVTVGSLKTSAVPSTSTMSQEPEL LISGMEKPLPLRTDFS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ALA n 1 6 SER n 1 7 MET n 1 8 THR n 1 9 GLY n 1 10 GLY n 1 11 MET n 1 12 GLY n 1 13 ARG n 1 14 GLY n 1 15 SER n 1 16 MET n 1 17 MET n 1 18 PRO n 1 19 ALA n 1 20 GLU n 1 21 ILE n 1 22 SER n 1 23 ALA n 1 24 VAL n 1 25 CYS n 1 26 GLU n 1 27 LYS n 1 28 GLY n 1 29 ASN n 1 30 PHE n 1 31 ASN n 1 32 VAL n 1 33 ALA n 1 34 HIS n 1 35 GLY n 1 36 LEU n 1 37 ALA n 1 38 TRP n 1 39 SER n 1 40 TYR n 1 41 TYR n 1 42 ILE n 1 43 GLY n 1 44 TYR n 1 45 LEU n 1 46 ARG n 1 47 LEU n 1 48 ILE n 1 49 LEU n 1 50 PRO n 1 51 GLU n 1 52 LEU n 1 53 GLN n 1 54 ALA n 1 55 ARG n 1 56 ILE n 1 57 ARG n 1 58 THR n 1 59 TYR n 1 60 ASN n 1 61 GLN n 1 62 HIS n 1 63 TYR n 1 64 ASN n 1 65 ASN n 1 66 LEU n 1 67 LEU n 1 68 ARG n 1 69 GLY n 1 70 ALA n 1 71 VAL n 1 72 SER n 1 73 GLN n 1 74 ARG n 1 75 LEU n 1 76 TYR n 1 77 ILE n 1 78 LEU n 1 79 LEU n 1 80 PRO n 1 81 LEU n 1 82 ASP n 1 83 CYS n 1 84 GLY n 1 85 VAL n 1 86 PRO n 1 87 ASP n 1 88 ASN n 1 89 LEU n 1 90 SER n 1 91 MET n 1 92 ALA n 1 93 ASP n 1 94 PRO n 1 95 ASN n 1 96 ILE n 1 97 ARG n 1 98 PHE n 1 99 LEU n 1 100 ASP n 1 101 LYS n 1 102 LEU n 1 103 PRO n 1 104 GLN n 1 105 GLN n 1 106 THR n 1 107 ALA n 1 108 ASP n 1 109 ARG n 1 110 ALA n 1 111 GLY n 1 112 ILE n 1 113 LYS n 1 114 ASP n 1 115 ARG n 1 116 VAL n 1 117 TYR n 1 118 SER n 1 119 ASN n 1 120 SER n 1 121 ILE n 1 122 TYR n 1 123 GLU n 1 124 LEU n 1 125 LEU n 1 126 GLU n 1 127 ASN n 1 128 GLY n 1 129 GLN n 1 130 ARG n 1 131 ALA n 1 132 GLY n 1 133 THR n 1 134 CYS n 1 135 VAL n 1 136 LEU n 1 137 GLU n 1 138 TYR n 1 139 ALA n 1 140 THR n 1 141 PRO n 1 142 LEU n 1 143 GLN n 1 144 THR n 1 145 LEU n 1 146 PHE n 1 147 ALA n 1 148 MET n 1 149 SER n 1 150 GLN n 1 151 TYR n 1 152 SER n 1 153 GLN n 1 154 ALA n 1 155 GLY n 1 156 PHE n 1 157 SER n 1 158 ARG n 1 159 GLU n 1 160 ASP n 1 161 ARG n 1 162 LEU n 1 163 GLU n 1 164 GLN n 1 165 ALA n 1 166 LYS n 1 167 LEU n 1 168 PHE n 1 169 CYS n 1 170 ARG n 1 171 THR n 1 172 LEU n 1 173 GLU n 1 174 ASP n 1 175 ILE n 1 176 LEU n 1 177 ALA n 1 178 ASP n 1 179 ALA n 1 180 PRO n 1 181 GLU n 1 182 SER n 1 183 GLN n 1 184 ASN n 1 185 ASN n 1 186 CYS n 1 187 ARG n 1 188 LEU n 1 189 ILE n 1 190 ALA n 1 191 TYR n 1 192 GLN n 1 193 GLU n 1 194 PRO n 1 195 ALA n 1 196 ASP n 1 197 ASP n 1 198 SER n 1 199 SER n 1 200 PHE n 1 201 SER n 1 202 LEU n 1 203 SER n 1 204 GLN n 1 205 GLU n 1 206 VAL n 1 207 LEU n 1 208 ARG n 1 209 HIS n 1 210 LEU n 1 211 ARG n 1 212 GLN n 1 213 GLU n 1 214 GLU n 1 215 LYS n 1 216 GLU n 1 217 GLU n 1 218 VAL n 1 219 THR n 1 220 VAL n 1 221 GLY n 1 222 SER n 1 223 LEU n 1 224 LYS n 1 225 THR n 1 226 SER n 1 227 ALA n 1 228 VAL n 1 229 PRO n 1 230 SER n 1 231 THR n 1 232 SER n 1 233 THR n 1 234 MET n 1 235 SER n 1 236 GLN n 1 237 GLU n 1 238 PRO n 1 239 GLU n 1 240 LEU n 1 241 LEU n 1 242 ILE n 1 243 SER n 1 244 GLY n 1 245 MET n 1 246 GLU n 1 247 LYS n 1 248 PRO n 1 249 LEU n 1 250 PRO n 1 251 LEU n 1 252 ARG n 1 253 THR n 1 254 ASP n 1 255 PHE n 1 256 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TMEM173, ERIS, MITA, STING' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TM173_HUMAN _struct_ref.pdbx_db_accession Q86WV6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PAEISAVCEKGNFNVAHGLAWSYYIGYLRLILPELQARIRTYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIR FLDKLPQQTGDHAGIKDRVYSNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILA DAPESQNNCRLIAYQEPADDSSFSLSQEVLRHLRQEEKEEVTVGSLKTSAVPSTSTMSQEPELLISGMEKPLPLRTDFS ; _struct_ref.pdbx_align_begin 141 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4F5E _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 18 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 256 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q86WV6 _struct_ref_seq.db_align_beg 141 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 379 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 141 _struct_ref_seq.pdbx_auth_seq_align_end 379 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4F5E GLY A 1 ? UNP Q86WV6 ? ? 'EXPRESSION TAG' 124 1 1 4F5E SER A 2 ? UNP Q86WV6 ? ? 'EXPRESSION TAG' 125 2 1 4F5E HIS A 3 ? UNP Q86WV6 ? ? 'EXPRESSION TAG' 126 3 1 4F5E MET A 4 ? UNP Q86WV6 ? ? 'EXPRESSION TAG' 127 4 1 4F5E ALA A 5 ? UNP Q86WV6 ? ? 'EXPRESSION TAG' 128 5 1 4F5E SER A 6 ? UNP Q86WV6 ? ? 'EXPRESSION TAG' 129 6 1 4F5E MET A 7 ? UNP Q86WV6 ? ? 'EXPRESSION TAG' 130 7 1 4F5E THR A 8 ? UNP Q86WV6 ? ? 'EXPRESSION TAG' 131 8 1 4F5E GLY A 9 ? UNP Q86WV6 ? ? 'EXPRESSION TAG' 132 9 1 4F5E GLY A 10 ? UNP Q86WV6 ? ? 'EXPRESSION TAG' 133 10 1 4F5E MET A 11 ? UNP Q86WV6 ? ? 'EXPRESSION TAG' 134 11 1 4F5E GLY A 12 ? UNP Q86WV6 ? ? 'EXPRESSION TAG' 135 12 1 4F5E ARG A 13 ? UNP Q86WV6 ? ? 'EXPRESSION TAG' 136 13 1 4F5E GLY A 14 ? UNP Q86WV6 ? ? 'EXPRESSION TAG' 137 14 1 4F5E SER A 15 ? UNP Q86WV6 ? ? 'EXPRESSION TAG' 138 15 1 4F5E MET A 16 ? UNP Q86WV6 ? ? 'EXPRESSION TAG' 139 16 1 4F5E MET A 17 ? UNP Q86WV6 ? ? 'EXPRESSION TAG' 140 17 1 4F5E ALA A 107 ? UNP Q86WV6 GLY 230 'ENGINEERED MUTATION' 230 18 1 4F5E ARG A 109 ? UNP Q86WV6 HIS 232 'SEE REMARK 999' 232 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EPE non-polymer . '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' HEPES 'C8 H18 N2 O4 S' 238.305 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4F5E _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.94 _exptl_crystal.density_percent_sol 36.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;25.0% PEG 3350, 0.1M Bis-tris pH 6.5, 0.2M NH4-acetate, 5% Glycerol, 0.025% Dichloromethane, VAPOR DIFFUSION, HANGING DROP, temperature 289K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-02-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.pdbx_synchrotron_site SSRF _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 # _reflns.entry_id 4F5E _reflns.observed_criterion_sigma_I 3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.6 _reflns.number_obs 7343 _reflns.number_all 7431 _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4F5E _refine.ls_number_reflns_obs 7324 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.991 _refine.ls_d_res_high 2.601 _refine.ls_percent_reflns_obs 98.91 _refine.ls_R_factor_obs 0.2158 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2115 _refine.ls_R_factor_R_free 0.2548 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.99 _refine.ls_number_reflns_R_free 732 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 84.2933 _refine.aniso_B[1][1] 1.7143 _refine.aniso_B[2][2] 1.7143 _refine.aniso_B[3][3] -3.4286 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.354 _refine.solvent_model_param_bsol 65.910 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.95 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.32 _refine.overall_FOM_work_R_set 0.8194 _refine.B_iso_max 199.780 _refine.B_iso_min 36.900 _refine.pdbx_overall_phase_error 23.5600 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1497 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 31 _refine_hist.number_atoms_total 1543 _refine_hist.d_res_high 2.601 _refine_hist.d_res_low 19.991 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.013 ? ? 1541 ? 'X-RAY DIFFRACTION' f_angle_d 0.963 ? ? 2089 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 17.764 ? ? 588 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.082 ? ? 225 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 276 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs 'X-RAY DIFFRACTION' 5 2.6006 2.8009 1287 0.3057 100.00 0.3378 . . 143 . . . . 'X-RAY DIFFRACTION' 5 2.8009 3.0818 1306 0.2689 100.00 0.3022 . . 144 . . . . 'X-RAY DIFFRACTION' 5 3.0818 3.5257 1296 0.2206 100.00 0.3171 . . 144 . . . . 'X-RAY DIFFRACTION' 5 3.5257 4.4340 1323 0.1810 99.00 0.1967 . . 147 . . . . 'X-RAY DIFFRACTION' 5 4.4340 19.9916 1380 0.2037 97.00 0.2500 . . 154 . . . . # _struct.entry_id 4F5E _struct.title 'Crystal structure of ERIS/STING' _struct.pdbx_descriptor 'Transmembrane protein 173' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4F5E _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'Receptor, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 32 ? TYR A 44 ? VAL A 155 TYR A 167 1 ? 13 HELX_P HELX_P2 2 TYR A 44 ? LEU A 49 ? TYR A 167 LEU A 172 1 ? 6 HELX_P HELX_P3 3 GLU A 51 ? HIS A 62 ? GLU A 174 HIS A 185 1 ? 12 HELX_P HELX_P4 4 ASN A 88 ? ASP A 93 ? ASN A 211 ASP A 216 1 ? 6 HELX_P HELX_P5 5 THR A 140 ? GLN A 150 ? THR A 263 GLN A 273 1 ? 11 HELX_P HELX_P6 6 TYR A 151 ? GLY A 155 ? TYR A 274 GLY A 278 5 ? 5 HELX_P HELX_P7 7 SER A 157 ? ALA A 179 ? SER A 280 ALA A 302 1 ? 23 HELX_P HELX_P8 8 SER A 182 ? ASN A 184 ? SER A 305 ASN A 307 5 ? 3 HELX_P HELX_P9 9 SER A 201 ? GLU A 213 ? SER A 324 GLU A 336 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLN 105 A . ? GLN 228 A THR 106 A ? THR 229 A 1 3.64 2 ARG 115 A . ? ARG 238 A VAL 116 A ? VAL 239 A 1 11.39 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 96 ? LYS A 101 ? ILE A 219 LYS A 224 A 2 SER A 120 ? LEU A 125 ? SER A 243 LEU A 248 A 3 ARG A 130 ? TYR A 138 ? ARG A 253 TYR A 261 A 4 LEU A 75 ? PRO A 80 ? LEU A 198 PRO A 203 A 5 CYS A 186 ? TYR A 191 ? CYS A 309 TYR A 314 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 100 ? N ASP A 223 O ILE A 121 ? O ILE A 244 A 2 3 N TYR A 122 ? N TYR A 245 O CYS A 134 ? O CYS A 257 A 3 4 O GLU A 137 ? O GLU A 260 N LEU A 78 ? N LEU A 201 A 4 5 N ILE A 77 ? N ILE A 200 O ILE A 189 ? O ILE A 312 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE EPE A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 SER A 39 ? SER A 162 . ? 1_555 ? 2 AC1 7 TYR A 40 ? TYR A 163 . ? 1_555 ? 3 AC1 7 GLY A 43 ? GLY A 166 . ? 1_555 ? 4 AC1 7 TYR A 44 ? TYR A 167 . ? 1_555 ? 5 AC1 7 GLU A 137 ? GLU A 260 . ? 1_555 ? 6 AC1 7 THR A 140 ? THR A 263 . ? 1_555 ? 7 AC1 7 HOH C . ? HOH A 528 . ? 1_555 ? # _database_PDB_matrix.entry_id 4F5E _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4F5E _atom_sites.fract_transf_matrix[1][1] 0.016442 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016442 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008319 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 124 ? ? ? A . n A 1 2 SER 2 125 ? ? ? A . n A 1 3 HIS 3 126 ? ? ? A . n A 1 4 MET 4 127 ? ? ? A . n A 1 5 ALA 5 128 ? ? ? A . n A 1 6 SER 6 129 ? ? ? A . n A 1 7 MET 7 130 ? ? ? A . n A 1 8 THR 8 131 ? ? ? A . n A 1 9 GLY 9 132 ? ? ? A . n A 1 10 GLY 10 133 ? ? ? A . n A 1 11 MET 11 134 ? ? ? A . n A 1 12 GLY 12 135 ? ? ? A . n A 1 13 ARG 13 136 ? ? ? A . n A 1 14 GLY 14 137 ? ? ? A . n A 1 15 SER 15 138 ? ? ? A . n A 1 16 MET 16 139 ? ? ? A . n A 1 17 MET 17 140 ? ? ? A . n A 1 18 PRO 18 141 ? ? ? A . n A 1 19 ALA 19 142 ? ? ? A . n A 1 20 GLU 20 143 ? ? ? A . n A 1 21 ILE 21 144 ? ? ? A . n A 1 22 SER 22 145 ? ? ? A . n A 1 23 ALA 23 146 ? ? ? A . n A 1 24 VAL 24 147 ? ? ? A . n A 1 25 CYS 25 148 ? ? ? A . n A 1 26 GLU 26 149 ? ? ? A . n A 1 27 LYS 27 150 ? ? ? A . n A 1 28 GLY 28 151 151 GLY GLY A . n A 1 29 ASN 29 152 152 ASN ASN A . n A 1 30 PHE 30 153 153 PHE PHE A . n A 1 31 ASN 31 154 154 ASN ASN A . n A 1 32 VAL 32 155 155 VAL VAL A . n A 1 33 ALA 33 156 156 ALA ALA A . n A 1 34 HIS 34 157 157 HIS HIS A . n A 1 35 GLY 35 158 158 GLY GLY A . n A 1 36 LEU 36 159 159 LEU LEU A . n A 1 37 ALA 37 160 160 ALA ALA A . n A 1 38 TRP 38 161 161 TRP TRP A . n A 1 39 SER 39 162 162 SER SER A . n A 1 40 TYR 40 163 163 TYR TYR A . n A 1 41 TYR 41 164 164 TYR TYR A . n A 1 42 ILE 42 165 165 ILE ILE A . n A 1 43 GLY 43 166 166 GLY GLY A . n A 1 44 TYR 44 167 167 TYR TYR A . n A 1 45 LEU 45 168 168 LEU LEU A . n A 1 46 ARG 46 169 169 ARG ARG A . n A 1 47 LEU 47 170 170 LEU LEU A . n A 1 48 ILE 48 171 171 ILE ILE A . n A 1 49 LEU 49 172 172 LEU LEU A . n A 1 50 PRO 50 173 173 PRO PRO A . n A 1 51 GLU 51 174 174 GLU GLU A . n A 1 52 LEU 52 175 175 LEU LEU A . n A 1 53 GLN 53 176 176 GLN GLN A . n A 1 54 ALA 54 177 177 ALA ALA A . n A 1 55 ARG 55 178 178 ARG ARG A . n A 1 56 ILE 56 179 179 ILE ILE A . n A 1 57 ARG 57 180 180 ARG ARG A . n A 1 58 THR 58 181 181 THR THR A . n A 1 59 TYR 59 182 182 TYR TYR A . n A 1 60 ASN 60 183 183 ASN ASN A . n A 1 61 GLN 61 184 184 GLN GLN A . n A 1 62 HIS 62 185 185 HIS HIS A . n A 1 63 TYR 63 186 186 TYR TYR A . n A 1 64 ASN 64 187 187 ASN ASN A . n A 1 65 ASN 65 188 188 ASN ASN A . n A 1 66 LEU 66 189 189 LEU LEU A . n A 1 67 LEU 67 190 190 LEU LEU A . n A 1 68 ARG 68 191 191 ARG ARG A . n A 1 69 GLY 69 192 192 GLY GLY A . n A 1 70 ALA 70 193 193 ALA ALA A . n A 1 71 VAL 71 194 194 VAL VAL A . n A 1 72 SER 72 195 195 SER SER A . n A 1 73 GLN 73 196 196 GLN GLN A . n A 1 74 ARG 74 197 197 ARG ARG A . n A 1 75 LEU 75 198 198 LEU LEU A . n A 1 76 TYR 76 199 199 TYR TYR A . n A 1 77 ILE 77 200 200 ILE ILE A . n A 1 78 LEU 78 201 201 LEU LEU A . n A 1 79 LEU 79 202 202 LEU LEU A . n A 1 80 PRO 80 203 203 PRO PRO A . n A 1 81 LEU 81 204 204 LEU LEU A . n A 1 82 ASP 82 205 205 ASP ASP A . n A 1 83 CYS 83 206 206 CYS CYS A . n A 1 84 GLY 84 207 207 GLY GLY A . n A 1 85 VAL 85 208 208 VAL VAL A . n A 1 86 PRO 86 209 209 PRO PRO A . n A 1 87 ASP 87 210 210 ASP ASP A . n A 1 88 ASN 88 211 211 ASN ASN A . n A 1 89 LEU 89 212 212 LEU LEU A . n A 1 90 SER 90 213 213 SER SER A . n A 1 91 MET 91 214 214 MET MET A . n A 1 92 ALA 92 215 215 ALA ALA A . n A 1 93 ASP 93 216 216 ASP ASP A . n A 1 94 PRO 94 217 217 PRO PRO A . n A 1 95 ASN 95 218 218 ASN ASN A . n A 1 96 ILE 96 219 219 ILE ILE A . n A 1 97 ARG 97 220 220 ARG ARG A . n A 1 98 PHE 98 221 221 PHE PHE A . n A 1 99 LEU 99 222 222 LEU LEU A . n A 1 100 ASP 100 223 223 ASP ASP A . n A 1 101 LYS 101 224 224 LYS LYS A . n A 1 102 LEU 102 225 225 LEU LEU A . n A 1 103 PRO 103 226 226 PRO PRO A . n A 1 104 GLN 104 227 227 GLN GLN A . n A 1 105 GLN 105 228 228 GLN GLN A . n A 1 106 THR 106 229 229 THR THR A . n A 1 107 ALA 107 230 230 ALA ALA A . n A 1 108 ASP 108 231 231 ASP ASP A . n A 1 109 ARG 109 232 232 ARG ARG A . n A 1 110 ALA 110 233 233 ALA ALA A . n A 1 111 GLY 111 234 234 GLY GLY A . n A 1 112 ILE 112 235 235 ILE ILE A . n A 1 113 LYS 113 236 236 LYS LYS A . n A 1 114 ASP 114 237 237 ASP ASP A . n A 1 115 ARG 115 238 238 ARG ARG A . n A 1 116 VAL 116 239 239 VAL VAL A . n A 1 117 TYR 117 240 240 TYR TYR A . n A 1 118 SER 118 241 241 SER SER A . n A 1 119 ASN 119 242 242 ASN ASN A . n A 1 120 SER 120 243 243 SER SER A . n A 1 121 ILE 121 244 244 ILE ILE A . n A 1 122 TYR 122 245 245 TYR TYR A . n A 1 123 GLU 123 246 246 GLU GLU A . n A 1 124 LEU 124 247 247 LEU LEU A . n A 1 125 LEU 125 248 248 LEU LEU A . n A 1 126 GLU 126 249 249 GLU GLU A . n A 1 127 ASN 127 250 250 ASN ASN A . n A 1 128 GLY 128 251 251 GLY GLY A . n A 1 129 GLN 129 252 252 GLN GLN A . n A 1 130 ARG 130 253 253 ARG ARG A . n A 1 131 ALA 131 254 254 ALA ALA A . n A 1 132 GLY 132 255 255 GLY GLY A . n A 1 133 THR 133 256 256 THR THR A . n A 1 134 CYS 134 257 257 CYS CYS A . n A 1 135 VAL 135 258 258 VAL VAL A . n A 1 136 LEU 136 259 259 LEU LEU A . n A 1 137 GLU 137 260 260 GLU GLU A . n A 1 138 TYR 138 261 261 TYR TYR A . n A 1 139 ALA 139 262 262 ALA ALA A . n A 1 140 THR 140 263 263 THR THR A . n A 1 141 PRO 141 264 264 PRO PRO A . n A 1 142 LEU 142 265 265 LEU LEU A . n A 1 143 GLN 143 266 266 GLN GLN A . n A 1 144 THR 144 267 267 THR THR A . n A 1 145 LEU 145 268 268 LEU LEU A . n A 1 146 PHE 146 269 269 PHE PHE A . n A 1 147 ALA 147 270 270 ALA ALA A . n A 1 148 MET 148 271 271 MET MET A . n A 1 149 SER 149 272 272 SER SER A . n A 1 150 GLN 150 273 273 GLN GLN A . n A 1 151 TYR 151 274 274 TYR TYR A . n A 1 152 SER 152 275 275 SER SER A . n A 1 153 GLN 153 276 276 GLN GLN A . n A 1 154 ALA 154 277 277 ALA ALA A . n A 1 155 GLY 155 278 278 GLY GLY A . n A 1 156 PHE 156 279 279 PHE PHE A . n A 1 157 SER 157 280 280 SER SER A . n A 1 158 ARG 158 281 281 ARG ARG A . n A 1 159 GLU 159 282 282 GLU GLU A . n A 1 160 ASP 160 283 283 ASP ASP A . n A 1 161 ARG 161 284 284 ARG ARG A . n A 1 162 LEU 162 285 285 LEU LEU A . n A 1 163 GLU 163 286 286 GLU GLU A . n A 1 164 GLN 164 287 287 GLN GLN A . n A 1 165 ALA 165 288 288 ALA ALA A . n A 1 166 LYS 166 289 289 LYS LYS A . n A 1 167 LEU 167 290 290 LEU LEU A . n A 1 168 PHE 168 291 291 PHE PHE A . n A 1 169 CYS 169 292 292 CYS CYS A . n A 1 170 ARG 170 293 293 ARG ARG A . n A 1 171 THR 171 294 294 THR THR A . n A 1 172 LEU 172 295 295 LEU LEU A . n A 1 173 GLU 173 296 296 GLU GLU A . n A 1 174 ASP 174 297 297 ASP ASP A . n A 1 175 ILE 175 298 298 ILE ILE A . n A 1 176 LEU 176 299 299 LEU LEU A . n A 1 177 ALA 177 300 300 ALA ALA A . n A 1 178 ASP 178 301 301 ASP ASP A . n A 1 179 ALA 179 302 302 ALA ALA A . n A 1 180 PRO 180 303 303 PRO PRO A . n A 1 181 GLU 181 304 304 GLU GLU A . n A 1 182 SER 182 305 305 SER SER A . n A 1 183 GLN 183 306 306 GLN GLN A . n A 1 184 ASN 184 307 307 ASN ASN A . n A 1 185 ASN 185 308 308 ASN ASN A . n A 1 186 CYS 186 309 309 CYS CYS A . n A 1 187 ARG 187 310 310 ARG ARG A . n A 1 188 LEU 188 311 311 LEU LEU A . n A 1 189 ILE 189 312 312 ILE ILE A . n A 1 190 ALA 190 313 313 ALA ALA A . n A 1 191 TYR 191 314 314 TYR TYR A . n A 1 192 GLN 192 315 315 GLN GLN A . n A 1 193 GLU 193 316 316 GLU GLU A . n A 1 194 PRO 194 317 317 PRO PRO A . n A 1 195 ALA 195 318 318 ALA ALA A . n A 1 196 ASP 196 319 319 ASP ASP A . n A 1 197 ASP 197 320 320 ASP ASP A . n A 1 198 SER 198 321 321 SER SER A . n A 1 199 SER 199 322 322 SER SER A . n A 1 200 PHE 200 323 323 PHE PHE A . n A 1 201 SER 201 324 324 SER SER A . n A 1 202 LEU 202 325 325 LEU LEU A . n A 1 203 SER 203 326 326 SER SER A . n A 1 204 GLN 204 327 327 GLN GLN A . n A 1 205 GLU 205 328 328 GLU GLU A . n A 1 206 VAL 206 329 329 VAL VAL A . n A 1 207 LEU 207 330 330 LEU LEU A . n A 1 208 ARG 208 331 331 ARG ARG A . n A 1 209 HIS 209 332 332 HIS HIS A . n A 1 210 LEU 210 333 333 LEU LEU A . n A 1 211 ARG 211 334 334 ARG ARG A . n A 1 212 GLN 212 335 335 GLN GLN A . n A 1 213 GLU 213 336 336 GLU GLU A . n A 1 214 GLU 214 337 ? ? ? A . n A 1 215 LYS 215 338 ? ? ? A . n A 1 216 GLU 216 339 ? ? ? A . n A 1 217 GLU 217 340 ? ? ? A . n A 1 218 VAL 218 341 ? ? ? A . n A 1 219 THR 219 342 ? ? ? A . n A 1 220 VAL 220 343 ? ? ? A . n A 1 221 GLY 221 344 ? ? ? A . n A 1 222 SER 222 345 ? ? ? A . n A 1 223 LEU 223 346 ? ? ? A . n A 1 224 LYS 224 347 ? ? ? A . n A 1 225 THR 225 348 ? ? ? A . n A 1 226 SER 226 349 ? ? ? A . n A 1 227 ALA 227 350 ? ? ? A . n A 1 228 VAL 228 351 ? ? ? A . n A 1 229 PRO 229 352 ? ? ? A . n A 1 230 SER 230 353 ? ? ? A . n A 1 231 THR 231 354 ? ? ? A . n A 1 232 SER 232 355 ? ? ? A . n A 1 233 THR 233 356 ? ? ? A . n A 1 234 MET 234 357 ? ? ? A . n A 1 235 SER 235 358 ? ? ? A . n A 1 236 GLN 236 359 ? ? ? A . n A 1 237 GLU 237 360 ? ? ? A . n A 1 238 PRO 238 361 ? ? ? A . n A 1 239 GLU 239 362 ? ? ? A . n A 1 240 LEU 240 363 ? ? ? A . n A 1 241 LEU 241 364 ? ? ? A . n A 1 242 ILE 242 365 ? ? ? A . n A 1 243 SER 243 366 ? ? ? A . n A 1 244 GLY 244 367 ? ? ? A . n A 1 245 MET 245 368 ? ? ? A . n A 1 246 GLU 246 369 ? ? ? A . n A 1 247 LYS 247 370 ? ? ? A . n A 1 248 PRO 248 371 ? ? ? A . n A 1 249 LEU 249 372 ? ? ? A . n A 1 250 PRO 250 373 ? ? ? A . n A 1 251 LEU 251 374 ? ? ? A . n A 1 252 ARG 252 375 ? ? ? A . n A 1 253 THR 253 376 ? ? ? A . n A 1 254 ASP 254 377 ? ? ? A . n A 1 255 PHE 255 378 ? ? ? A . n A 1 256 SER 256 379 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1760 ? 1 MORE -17 ? 1 'SSA (A^2)' 20140 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 509 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-27 2 'Structure model' 1 1 2012-11-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -4.5757 -5.6560 15.0695 0.3513 0.4237 0.3524 -0.0137 -0.0977 -0.0014 7.4836 3.3449 5.1415 2.0232 -3.5237 -2.0077 0.1730 -0.3420 -0.0183 0.2732 -0.0188 0.1563 -0.3808 0.1222 -0.0000 'X-RAY DIFFRACTION' 2 ? refined -6.8835 -6.4955 5.7240 1.0658 1.5368 1.3882 -0.1301 -0.1104 -0.3491 4.8332 3.5928 2.0576 3.6044 -0.1160 1.2770 0.5711 0.0720 0.1054 0.6695 1.1912 0.7945 -0.6220 -0.7548 -1.2120 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 151 A 336 '( CHAIN A AND RESID 151:336 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 401 A 401 '( CHAIN A AND RESID 401:401 )' ? ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 AutoSol phasing . ? 2 PHENIX refinement '(phenix.refine: 1.6.4_486)' ? 3 XDS 'data reduction' . ? 4 XDS 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 4F5E _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'H232R IS BASED ON REF2 OF DATABASE Q86WV6 (TM173_HUMAN). IT CORRESPONDS TO VARIANT RS1131769.' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 309 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 CYS _pdbx_validate_rmsd_bond.auth_seq_id_2 309 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.713 _pdbx_validate_rmsd_bond.bond_target_value 1.812 _pdbx_validate_rmsd_bond.bond_deviation -0.099 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.016 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 167 ? ? -137.57 -73.74 2 1 ASN A 187 ? ? -175.55 131.74 3 1 ILE A 235 ? ? -49.72 154.23 4 1 ARG A 238 ? ? -39.61 136.63 5 1 GLU A 304 ? ? 69.55 -6.08 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 124 ? A GLY 1 2 1 Y 1 A SER 125 ? A SER 2 3 1 Y 1 A HIS 126 ? A HIS 3 4 1 Y 1 A MET 127 ? A MET 4 5 1 Y 1 A ALA 128 ? A ALA 5 6 1 Y 1 A SER 129 ? A SER 6 7 1 Y 1 A MET 130 ? A MET 7 8 1 Y 1 A THR 131 ? A THR 8 9 1 Y 1 A GLY 132 ? A GLY 9 10 1 Y 1 A GLY 133 ? A GLY 10 11 1 Y 1 A MET 134 ? A MET 11 12 1 Y 1 A GLY 135 ? A GLY 12 13 1 Y 1 A ARG 136 ? A ARG 13 14 1 Y 1 A GLY 137 ? A GLY 14 15 1 Y 1 A SER 138 ? A SER 15 16 1 Y 1 A MET 139 ? A MET 16 17 1 Y 1 A MET 140 ? A MET 17 18 1 Y 1 A PRO 141 ? A PRO 18 19 1 Y 1 A ALA 142 ? A ALA 19 20 1 Y 1 A GLU 143 ? A GLU 20 21 1 Y 1 A ILE 144 ? A ILE 21 22 1 Y 1 A SER 145 ? A SER 22 23 1 Y 1 A ALA 146 ? A ALA 23 24 1 Y 1 A VAL 147 ? A VAL 24 25 1 Y 1 A CYS 148 ? A CYS 25 26 1 Y 1 A GLU 149 ? A GLU 26 27 1 Y 1 A LYS 150 ? A LYS 27 28 1 Y 1 A GLU 337 ? A GLU 214 29 1 Y 1 A LYS 338 ? A LYS 215 30 1 Y 1 A GLU 339 ? A GLU 216 31 1 Y 1 A GLU 340 ? A GLU 217 32 1 Y 1 A VAL 341 ? A VAL 218 33 1 Y 1 A THR 342 ? A THR 219 34 1 Y 1 A VAL 343 ? A VAL 220 35 1 Y 1 A GLY 344 ? A GLY 221 36 1 Y 1 A SER 345 ? A SER 222 37 1 Y 1 A LEU 346 ? A LEU 223 38 1 Y 1 A LYS 347 ? A LYS 224 39 1 Y 1 A THR 348 ? A THR 225 40 1 Y 1 A SER 349 ? A SER 226 41 1 Y 1 A ALA 350 ? A ALA 227 42 1 Y 1 A VAL 351 ? A VAL 228 43 1 Y 1 A PRO 352 ? A PRO 229 44 1 Y 1 A SER 353 ? A SER 230 45 1 Y 1 A THR 354 ? A THR 231 46 1 Y 1 A SER 355 ? A SER 232 47 1 Y 1 A THR 356 ? A THR 233 48 1 Y 1 A MET 357 ? A MET 234 49 1 Y 1 A SER 358 ? A SER 235 50 1 Y 1 A GLN 359 ? A GLN 236 51 1 Y 1 A GLU 360 ? A GLU 237 52 1 Y 1 A PRO 361 ? A PRO 238 53 1 Y 1 A GLU 362 ? A GLU 239 54 1 Y 1 A LEU 363 ? A LEU 240 55 1 Y 1 A LEU 364 ? A LEU 241 56 1 Y 1 A ILE 365 ? A ILE 242 57 1 Y 1 A SER 366 ? A SER 243 58 1 Y 1 A GLY 367 ? A GLY 244 59 1 Y 1 A MET 368 ? A MET 245 60 1 Y 1 A GLU 369 ? A GLU 246 61 1 Y 1 A LYS 370 ? A LYS 247 62 1 Y 1 A PRO 371 ? A PRO 248 63 1 Y 1 A LEU 372 ? A LEU 249 64 1 Y 1 A PRO 373 ? A PRO 250 65 1 Y 1 A LEU 374 ? A LEU 251 66 1 Y 1 A ARG 375 ? A ARG 252 67 1 Y 1 A THR 376 ? A THR 253 68 1 Y 1 A ASP 377 ? A ASP 254 69 1 Y 1 A PHE 378 ? A PHE 255 70 1 Y 1 A SER 379 ? A SER 256 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' EPE 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE 1 401 1 EPE EPE A . C 3 HOH 1 501 2 HOH HOH A . C 3 HOH 2 502 3 HOH HOH A . C 3 HOH 3 503 5 HOH HOH A . C 3 HOH 4 504 9 HOH HOH A . C 3 HOH 5 505 10 HOH HOH A . C 3 HOH 6 506 11 HOH HOH A . C 3 HOH 7 507 12 HOH HOH A . C 3 HOH 8 508 13 HOH HOH A . C 3 HOH 9 509 14 HOH HOH A . C 3 HOH 10 510 15 HOH HOH A . C 3 HOH 11 511 16 HOH HOH A . C 3 HOH 12 512 17 HOH HOH A . C 3 HOH 13 513 18 HOH HOH A . C 3 HOH 14 514 19 HOH HOH A . C 3 HOH 15 515 20 HOH HOH A . C 3 HOH 16 516 21 HOH HOH A . C 3 HOH 17 517 23 HOH HOH A . C 3 HOH 18 518 24 HOH HOH A . C 3 HOH 19 519 25 HOH HOH A . C 3 HOH 20 520 26 HOH HOH A . C 3 HOH 21 521 27 HOH HOH A . C 3 HOH 22 522 28 HOH HOH A . C 3 HOH 23 523 29 HOH HOH A . C 3 HOH 24 524 31 HOH HOH A . C 3 HOH 25 525 32 HOH HOH A . C 3 HOH 26 526 33 HOH HOH A . C 3 HOH 27 527 34 HOH HOH A . C 3 HOH 28 528 35 HOH HOH A . C 3 HOH 29 529 36 HOH HOH A . C 3 HOH 30 530 37 HOH HOH A . C 3 HOH 31 531 38 HOH HOH A . #