HEADER HYDROLASE 14-MAY-12 4F66 TITLE THE CRYSTAL STRUCTURE OF 6-PHOSPHO-BETA-GLUCOSIDASE FROM STREPTOCOCCUS TITLE 2 MUTANS UA159 IN COMPLEX WITH BETA-D-GLUCOSE-6-PHOSPHATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHOSPHO-BETA-GLUCOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.86; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS MUTANS; SOURCE 3 ORGANISM_TAXID: 1309; SOURCE 4 STRAIN: UA159; SOURCE 5 GENE: BGL, SMU_1601; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,K.MICHALSKA,C.HATZOS-SKINTGES,J.BEARDEN,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 13-SEP-23 4F66 1 HETSYN REVDAT 3 29-JUL-20 4F66 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 SITE REVDAT 2 15-NOV-17 4F66 1 JRNL REVDAT 1 13-JUN-12 4F66 0 SPRSDE 13-JUN-12 4F66 4DDE JRNL AUTH K.MICHALSKA,K.TAN,H.LI,C.HATZOS-SKINTGES,J.BEARDEN, JRNL AUTH 2 G.BABNIGG,A.JOACHIMIAK JRNL TITL GH1-FAMILY 6-P-BETA-GLUCOSIDASES FROM HUMAN MICROBIOME JRNL TITL 2 LACTIC ACID BACTERIA. JRNL REF ACTA CRYSTALLOGR. D BIOL. V. 69 451 2013 JRNL REF 2 CRYSTALLOGR. JRNL REFN ESSN 1399-0047 JRNL PMID 23519420 JRNL DOI 10.1107/S0907444912049608 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 163661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 8214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.0805 - 4.5867 0.99 5231 297 0.1656 0.1627 REMARK 3 2 4.5867 - 3.6442 1.00 5239 279 0.1341 0.1530 REMARK 3 3 3.6442 - 3.1846 1.00 5251 282 0.1567 0.1693 REMARK 3 4 3.1846 - 2.8939 1.00 5266 224 0.1586 0.1819 REMARK 3 5 2.8939 - 2.6867 1.00 5185 285 0.1609 0.1880 REMARK 3 6 2.6867 - 2.5285 1.00 5222 278 0.1578 0.1844 REMARK 3 7 2.5285 - 2.4020 1.00 5240 260 0.1482 0.1818 REMARK 3 8 2.4020 - 2.2975 1.00 5214 272 0.1512 0.1746 REMARK 3 9 2.2975 - 2.2091 1.00 5199 275 0.1508 0.1784 REMARK 3 10 2.2091 - 2.1329 1.00 5218 247 0.1484 0.1824 REMARK 3 11 2.1329 - 2.0662 1.00 5207 278 0.1526 0.1792 REMARK 3 12 2.0662 - 2.0072 1.00 5190 264 0.1538 0.1939 REMARK 3 13 2.0072 - 1.9544 1.00 5220 239 0.1535 0.1825 REMARK 3 14 1.9544 - 1.9067 1.00 5188 301 0.1503 0.1821 REMARK 3 15 1.9067 - 1.8634 1.00 5206 250 0.1525 0.1828 REMARK 3 16 1.8634 - 1.8237 1.00 5161 285 0.1582 0.1845 REMARK 3 17 1.8237 - 1.7873 1.00 5226 271 0.1591 0.1911 REMARK 3 18 1.7873 - 1.7536 1.00 5188 276 0.1588 0.1940 REMARK 3 19 1.7536 - 1.7222 1.00 5146 305 0.1655 0.1808 REMARK 3 20 1.7222 - 1.6931 1.00 5225 250 0.1733 0.2115 REMARK 3 21 1.6931 - 1.6658 1.00 5197 281 0.1764 0.2016 REMARK 3 22 1.6658 - 1.6401 1.00 5158 282 0.1840 0.2389 REMARK 3 23 1.6401 - 1.6160 1.00 5175 286 0.1924 0.2186 REMARK 3 24 1.6160 - 1.5933 1.00 5123 293 0.1994 0.2446 REMARK 3 25 1.5933 - 1.5717 1.00 5190 271 0.2186 0.2631 REMARK 3 26 1.5717 - 1.5513 1.00 5165 277 0.2246 0.2346 REMARK 3 27 1.5513 - 1.5319 1.00 5250 271 0.2442 0.2959 REMARK 3 28 1.5319 - 1.5135 1.00 5150 295 0.2494 0.2608 REMARK 3 29 1.5135 - 1.4959 0.99 5098 274 0.2615 0.2673 REMARK 3 30 1.4959 - 1.4791 0.92 4719 266 0.2813 0.3208 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 45.19 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.32770 REMARK 3 B22 (A**2) : -1.36780 REMARK 3 B33 (A**2) : -1.95990 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.70110 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 8233 REMARK 3 ANGLE : 1.060 11173 REMARK 3 CHIRALITY : 0.076 1120 REMARK 3 PLANARITY : 0.005 1456 REMARK 3 DIHEDRAL : 13.091 2999 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 0:50) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3207 0.9515 22.2931 REMARK 3 T TENSOR REMARK 3 T11: 0.1344 T22: 0.1191 REMARK 3 T33: 0.0860 T12: -0.0343 REMARK 3 T13: -0.0023 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 2.3084 L22: 0.8966 REMARK 3 L33: 1.0499 L12: -0.0719 REMARK 3 L13: 0.2793 L23: -0.1282 REMARK 3 S TENSOR REMARK 3 S11: 0.0323 S12: 0.1368 S13: 0.1376 REMARK 3 S21: -0.1905 S22: 0.0340 S23: 0.0672 REMARK 3 S31: 0.0401 S32: -0.1442 S33: -0.0527 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 51:79) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0656 -1.1968 12.2396 REMARK 3 T TENSOR REMARK 3 T11: 0.2128 T22: 0.2477 REMARK 3 T33: 0.1096 T12: -0.0446 REMARK 3 T13: -0.0322 T23: 0.0339 REMARK 3 L TENSOR REMARK 3 L11: 1.8677 L22: 1.9353 REMARK 3 L33: 1.0943 L12: -0.5399 REMARK 3 L13: -0.1163 L23: 0.0977 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: 0.5847 S13: 0.0512 REMARK 3 S21: -0.3773 S22: -0.0286 S23: 0.1826 REMARK 3 S31: 0.0582 S32: -0.2577 S33: -0.0283 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 80:120) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5312 -11.2921 21.0500 REMARK 3 T TENSOR REMARK 3 T11: 0.1838 T22: 0.1764 REMARK 3 T33: 0.1294 T12: -0.0554 REMARK 3 T13: -0.0201 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 1.4532 L22: 0.6436 REMARK 3 L33: 0.5629 L12: 0.0670 REMARK 3 L13: -0.3350 L23: -0.0340 REMARK 3 S TENSOR REMARK 3 S11: -0.1181 S12: 0.2281 S13: -0.2317 REMARK 3 S21: -0.1675 S22: 0.0537 S23: 0.1151 REMARK 3 S31: 0.1364 S32: -0.1744 S33: 0.0567 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 121:181) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2540 -6.0567 30.9735 REMARK 3 T TENSOR REMARK 3 T11: 0.0709 T22: 0.0978 REMARK 3 T33: 0.0936 T12: -0.0333 REMARK 3 T13: -0.0287 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.8617 L22: 0.5704 REMARK 3 L33: 0.5666 L12: 0.0694 REMARK 3 L13: -0.4079 L23: -0.0931 REMARK 3 S TENSOR REMARK 3 S11: -0.0268 S12: 0.1270 S13: -0.0698 REMARK 3 S21: -0.0922 S22: 0.0121 S23: 0.0793 REMARK 3 S31: 0.0705 S32: -0.1293 S33: 0.0110 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 182:272) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9939 4.6853 41.2201 REMARK 3 T TENSOR REMARK 3 T11: 0.0737 T22: 0.0913 REMARK 3 T33: 0.1072 T12: -0.0072 REMARK 3 T13: -0.0061 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.5951 L22: 0.4042 REMARK 3 L33: 0.2957 L12: 0.2411 REMARK 3 L13: 0.0484 L23: 0.1717 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: 0.0360 S13: 0.0427 REMARK 3 S21: -0.0332 S22: 0.0105 S23: 0.0712 REMARK 3 S31: -0.0167 S32: -0.0517 S33: 0.0112 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 273:318) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5398 1.9852 47.3617 REMARK 3 T TENSOR REMARK 3 T11: 0.0719 T22: 0.0944 REMARK 3 T33: 0.1000 T12: -0.0095 REMARK 3 T13: -0.0052 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.1015 L22: 0.8778 REMARK 3 L33: 0.5211 L12: 0.2853 REMARK 3 L13: -0.1368 L23: 0.2734 REMARK 3 S TENSOR REMARK 3 S11: -0.0106 S12: -0.1328 S13: 0.0648 REMARK 3 S21: 0.0623 S22: -0.0296 S23: 0.1707 REMARK 3 S31: 0.0846 S32: -0.0697 S33: 0.0308 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 319:375) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3706 10.7650 39.8840 REMARK 3 T TENSOR REMARK 3 T11: 0.0656 T22: 0.0929 REMARK 3 T33: 0.1097 T12: 0.0001 REMARK 3 T13: -0.0125 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.2356 L22: 0.5802 REMARK 3 L33: 0.7104 L12: 0.0891 REMARK 3 L13: -0.2717 L23: 0.2031 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: 0.0270 S13: 0.0849 REMARK 3 S21: -0.0631 S22: 0.0392 S23: 0.0136 REMARK 3 S31: -0.0525 S32: -0.0319 S33: -0.0433 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 376:411) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2999 4.2866 21.0508 REMARK 3 T TENSOR REMARK 3 T11: 0.1399 T22: 0.1161 REMARK 3 T33: 0.0992 T12: -0.0201 REMARK 3 T13: 0.0361 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.4233 L22: 0.5633 REMARK 3 L33: 1.9736 L12: -0.0608 REMARK 3 L13: -0.2730 L23: -0.2675 REMARK 3 S TENSOR REMARK 3 S11: 0.0559 S12: 0.1337 S13: 0.0583 REMARK 3 S21: -0.2340 S22: -0.0114 S23: -0.0880 REMARK 3 S31: 0.0197 S32: 0.1580 S33: -0.0079 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 412:456) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0991 3.1547 18.9004 REMARK 3 T TENSOR REMARK 3 T11: 0.1529 T22: 0.1289 REMARK 3 T33: 0.0936 T12: -0.0137 REMARK 3 T13: 0.0141 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.1519 L22: 0.8357 REMARK 3 L33: 1.0993 L12: -0.1431 REMARK 3 L13: 0.2808 L23: -0.0912 REMARK 3 S TENSOR REMARK 3 S11: 0.0315 S12: 0.2411 S13: 0.1054 REMARK 3 S21: -0.2495 S22: -0.0008 S23: 0.0452 REMARK 3 S31: -0.0405 S32: -0.0137 S33: -0.0449 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 457:477) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7283 -5.0240 18.0929 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.1414 REMARK 3 T33: 0.1264 T12: 0.0006 REMARK 3 T13: 0.0620 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.7265 L22: 1.8225 REMARK 3 L33: 2.1185 L12: -0.0332 REMARK 3 L13: -0.2148 L23: -0.8706 REMARK 3 S TENSOR REMARK 3 S11: -0.0645 S12: 0.1574 S13: -0.0874 REMARK 3 S21: -0.2065 S22: -0.0332 S23: -0.2827 REMARK 3 S31: 0.1177 S32: 0.2789 S33: 0.1182 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 0:181) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4654 -2.5921 81.4585 REMARK 3 T TENSOR REMARK 3 T11: 0.1759 T22: 0.1533 REMARK 3 T33: 0.0770 T12: 0.0509 REMARK 3 T13: -0.0113 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.8947 L22: 1.6808 REMARK 3 L33: 1.3660 L12: -0.6038 REMARK 3 L13: -0.2779 L23: 0.5420 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: -0.1853 S13: 0.0123 REMARK 3 S21: 0.2719 S22: 0.0682 S23: -0.1293 REMARK 3 S31: 0.1222 S32: 0.2262 S33: -0.0179 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 182:318) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9965 -4.9400 59.8059 REMARK 3 T TENSOR REMARK 3 T11: 0.1085 T22: 0.1252 REMARK 3 T33: 0.1070 T12: 0.0403 REMARK 3 T13: 0.0028 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.3164 L22: 0.4504 REMARK 3 L33: 0.8510 L12: -0.1407 REMARK 3 L13: -0.1486 L23: -0.2812 REMARK 3 S TENSOR REMARK 3 S11: -0.0498 S12: -0.0749 S13: -0.0481 REMARK 3 S21: 0.0196 S22: 0.0024 S23: -0.0458 REMARK 3 S31: 0.1399 S32: 0.1865 S33: 0.0020 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 319:477) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7074 14.1193 70.5254 REMARK 3 T TENSOR REMARK 3 T11: 0.1263 T22: 0.1189 REMARK 3 T33: 0.1243 T12: 0.0177 REMARK 3 T13: -0.0116 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 0.3490 L22: 0.4550 REMARK 3 L33: 1.1926 L12: 0.1541 REMARK 3 L13: -0.1318 L23: 0.0694 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: -0.1103 S13: 0.0661 REMARK 3 S21: 0.1415 S22: 0.0317 S23: -0.0776 REMARK 3 S31: -0.1502 S32: 0.1591 S33: -0.0478 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4F66 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 163713 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 25.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.58900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY: 3PN8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM FORMAT, 20% (W/V) PEG3350, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.22450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. IT IS PREDICTED THAT THE MOLECULE REMARK 300 IS MONOMERIC. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 62 -127.11 45.25 REMARK 500 GLU A 132 36.35 -152.61 REMARK 500 THR A 173 -74.29 -87.52 REMARK 500 GLU A 176 58.41 35.56 REMARK 500 GLU A 334 -30.90 -133.49 REMARK 500 ALA B 62 -127.98 43.32 REMARK 500 GLU B 132 35.68 -151.36 REMARK 500 GLU B 176 60.12 35.76 REMARK 500 GLU B 334 -30.81 -137.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC100193 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4F79 RELATED DB: PDB REMARK 900 A COMPLEX WITH SALICIN 6-PHOSPHATE DBREF 4F66 A 1 477 UNP Q8DT00 Q8DT00_STRMU 1 477 DBREF 4F66 B 1 477 UNP Q8DT00 Q8DT00_STRMU 1 477 SEQADV 4F66 SER A -2 UNP Q8DT00 EXPRESSION TAG SEQADV 4F66 ASN A -1 UNP Q8DT00 EXPRESSION TAG SEQADV 4F66 ALA A 0 UNP Q8DT00 EXPRESSION TAG SEQADV 4F66 SER B -2 UNP Q8DT00 EXPRESSION TAG SEQADV 4F66 ASN B -1 UNP Q8DT00 EXPRESSION TAG SEQADV 4F66 ALA B 0 UNP Q8DT00 EXPRESSION TAG SEQRES 1 A 480 SER ASN ALA MET SER LYS LEU PRO GLU ASN PHE LEU TRP SEQRES 2 A 480 GLY GLY ALA VAL ALA ALA HIS GLN LEU GLU GLY GLY TRP SEQRES 3 A 480 GLN GLU GLY GLY LYS GLY ILE SER VAL ALA ASP VAL MET SEQRES 4 A 480 THR ALA GLY ARG HIS GLY VAL ALA ARG GLU ILE THR ALA SEQRES 5 A 480 GLY VAL LEU GLU GLY LYS TYR TYR PRO ASN HIS GLU ALA SEQRES 6 A 480 ILE ASP PHE TYR HIS HIS TYR LYS GLU ASP VAL LYS LEU SEQRES 7 A 480 PHE ALA GLU MET GLY PHE LYS CYS PHE ARG THR SER ILE SEQRES 8 A 480 ALA TRP THR ARG ILE PHE PRO LYS GLY ASP GLU ALA GLU SEQRES 9 A 480 PRO ASN GLU ALA GLY LEU GLN PHE TYR ASP ASP LEU PHE SEQRES 10 A 480 ASP GLU CYS LEU LYS TYR GLY ILE GLU PRO VAL VAL THR SEQRES 11 A 480 LEU SER HIS PHE GLU LEU PRO TYR HIS LEU VAL THR GLU SEQRES 12 A 480 TYR GLY GLY PHE THR ASN ARG LYS VAL ILE ASP PHE PHE SEQRES 13 A 480 VAL HIS PHE ALA GLU VAL CYS PHE ARG ARG TYR LYS ASP SEQRES 14 A 480 LYS VAL LYS TYR TRP MET THR PHE ASN GLU ILE ASN ASN SEQRES 15 A 480 GLN ALA ASN TYR GLN GLU ASP PHE ALA PRO PHE THR ASN SEQRES 16 A 480 SER GLY ILE VAL TYR LYS GLU GLY ASP ASP ARG GLU ALA SEQRES 17 A 480 ILE MET TYR GLN ALA ALA HIS TYR GLU LEU VAL ALA SER SEQRES 18 A 480 ALA ARG ALA VAL LYS ILE GLY HIS ALA ILE ASN PRO ASN SEQRES 19 A 480 LEU ASN ILE GLY CYS MET VAL ALA MET CYS PRO ILE TYR SEQRES 20 A 480 PRO ALA THR CYS ASN PRO LYS ASP ILE LEU MET ALA GLN SEQRES 21 A 480 LYS ALA MET GLN LYS ARG TYR TYR PHE ALA ASP VAL HIS SEQRES 22 A 480 VAL HIS GLY PHE TYR PRO GLU HIS ILE PHE LYS TYR TRP SEQRES 23 A 480 GLU ARG LYS ALA ILE LYS VAL ASP PHE THR GLU ARG ASP SEQRES 24 A 480 LYS LYS ASP LEU PHE GLU GLY THR VAL ASP TYR ILE GLY SEQRES 25 A 480 PHE SER TYR TYR MET SER PHE VAL ILE ASP ALA HIS ARG SEQRES 26 A 480 GLU ASN ASN PRO TYR TYR ASP TYR LEU GLU THR GLU ASP SEQRES 27 A 480 LEU VAL LYS ASN PRO TYR VAL LYS ALA SER ASP TRP ASP SEQRES 28 A 480 TRP GLN ILE ASP PRO GLN GLY LEU ARG TYR ALA LEU ASN SEQRES 29 A 480 TRP PHE THR ASP MET TYR HIS LEU PRO LEU PHE ILE VAL SEQRES 30 A 480 GLU ASN GLY PHE GLY ALA ILE ASP GLN VAL GLU ALA ASP SEQRES 31 A 480 GLY MET VAL HIS ASP ASP TYR ARG ILE ASP TYR LEU GLY SEQRES 32 A 480 ALA HIS ILE LYS GLU MET ILE LYS ALA VAL ASP GLU ASP SEQRES 33 A 480 GLY VAL GLU LEU MET GLY TYR THR PRO TRP GLY CYS ILE SEQRES 34 A 480 ASP LEU VAL SER ALA GLY THR GLY GLU MET ARG LYS ARG SEQRES 35 A 480 TYR GLY PHE ILE TYR VAL ASP LYS ASP ASP GLU GLY LYS SEQRES 36 A 480 GLY THR LEU LYS ARG SER PRO LYS LEU SER PHE ASN TRP SEQRES 37 A 480 TYR LYS GLU VAL ILE ALA SER ASN GLY ASP ASP ILE SEQRES 1 B 480 SER ASN ALA MET SER LYS LEU PRO GLU ASN PHE LEU TRP SEQRES 2 B 480 GLY GLY ALA VAL ALA ALA HIS GLN LEU GLU GLY GLY TRP SEQRES 3 B 480 GLN GLU GLY GLY LYS GLY ILE SER VAL ALA ASP VAL MET SEQRES 4 B 480 THR ALA GLY ARG HIS GLY VAL ALA ARG GLU ILE THR ALA SEQRES 5 B 480 GLY VAL LEU GLU GLY LYS TYR TYR PRO ASN HIS GLU ALA SEQRES 6 B 480 ILE ASP PHE TYR HIS HIS TYR LYS GLU ASP VAL LYS LEU SEQRES 7 B 480 PHE ALA GLU MET GLY PHE LYS CYS PHE ARG THR SER ILE SEQRES 8 B 480 ALA TRP THR ARG ILE PHE PRO LYS GLY ASP GLU ALA GLU SEQRES 9 B 480 PRO ASN GLU ALA GLY LEU GLN PHE TYR ASP ASP LEU PHE SEQRES 10 B 480 ASP GLU CYS LEU LYS TYR GLY ILE GLU PRO VAL VAL THR SEQRES 11 B 480 LEU SER HIS PHE GLU LEU PRO TYR HIS LEU VAL THR GLU SEQRES 12 B 480 TYR GLY GLY PHE THR ASN ARG LYS VAL ILE ASP PHE PHE SEQRES 13 B 480 VAL HIS PHE ALA GLU VAL CYS PHE ARG ARG TYR LYS ASP SEQRES 14 B 480 LYS VAL LYS TYR TRP MET THR PHE ASN GLU ILE ASN ASN SEQRES 15 B 480 GLN ALA ASN TYR GLN GLU ASP PHE ALA PRO PHE THR ASN SEQRES 16 B 480 SER GLY ILE VAL TYR LYS GLU GLY ASP ASP ARG GLU ALA SEQRES 17 B 480 ILE MET TYR GLN ALA ALA HIS TYR GLU LEU VAL ALA SER SEQRES 18 B 480 ALA ARG ALA VAL LYS ILE GLY HIS ALA ILE ASN PRO ASN SEQRES 19 B 480 LEU ASN ILE GLY CYS MET VAL ALA MET CYS PRO ILE TYR SEQRES 20 B 480 PRO ALA THR CYS ASN PRO LYS ASP ILE LEU MET ALA GLN SEQRES 21 B 480 LYS ALA MET GLN LYS ARG TYR TYR PHE ALA ASP VAL HIS SEQRES 22 B 480 VAL HIS GLY PHE TYR PRO GLU HIS ILE PHE LYS TYR TRP SEQRES 23 B 480 GLU ARG LYS ALA ILE LYS VAL ASP PHE THR GLU ARG ASP SEQRES 24 B 480 LYS LYS ASP LEU PHE GLU GLY THR VAL ASP TYR ILE GLY SEQRES 25 B 480 PHE SER TYR TYR MET SER PHE VAL ILE ASP ALA HIS ARG SEQRES 26 B 480 GLU ASN ASN PRO TYR TYR ASP TYR LEU GLU THR GLU ASP SEQRES 27 B 480 LEU VAL LYS ASN PRO TYR VAL LYS ALA SER ASP TRP ASP SEQRES 28 B 480 TRP GLN ILE ASP PRO GLN GLY LEU ARG TYR ALA LEU ASN SEQRES 29 B 480 TRP PHE THR ASP MET TYR HIS LEU PRO LEU PHE ILE VAL SEQRES 30 B 480 GLU ASN GLY PHE GLY ALA ILE ASP GLN VAL GLU ALA ASP SEQRES 31 B 480 GLY MET VAL HIS ASP ASP TYR ARG ILE ASP TYR LEU GLY SEQRES 32 B 480 ALA HIS ILE LYS GLU MET ILE LYS ALA VAL ASP GLU ASP SEQRES 33 B 480 GLY VAL GLU LEU MET GLY TYR THR PRO TRP GLY CYS ILE SEQRES 34 B 480 ASP LEU VAL SER ALA GLY THR GLY GLU MET ARG LYS ARG SEQRES 35 B 480 TYR GLY PHE ILE TYR VAL ASP LYS ASP ASP GLU GLY LYS SEQRES 36 B 480 GLY THR LEU LYS ARG SER PRO LYS LEU SER PHE ASN TRP SEQRES 37 B 480 TYR LYS GLU VAL ILE ALA SER ASN GLY ASP ASP ILE HET BG6 A 501 16 HET EDO A 502 4 HET EDO A 503 4 HET FMT A 504 3 HET BG6 B 501 16 HET EDO B 502 8 HET EDO B 503 4 HET FMT B 504 3 HETNAM BG6 6-O-PHOSPHONO-BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM FMT FORMIC ACID HETSYN BG6 BETA-D-GLUCOSE-6-PHOSPHATE; 6-O-PHOSPHONO-BETA-D- HETSYN 2 BG6 GLUCOSE; 6-O-PHOSPHONO-D-GLUCOSE; 6-O-PHOSPHONO- HETSYN 3 BG6 GLUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 BG6 2(C6 H13 O9 P) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 6 FMT 2(C H2 O2) FORMUL 11 HOH *1145(H2 O) HELIX 1 1 ALA A 15 GLU A 20 1 6 HELIX 2 2 GLN A 24 LYS A 28 5 5 HELIX 3 3 SER A 31 MET A 36 5 6 HELIX 4 4 ASP A 64 GLY A 80 1 17 HELIX 5 5 ALA A 89 PHE A 94 1 6 HELIX 6 6 ASN A 103 TYR A 120 1 18 HELIX 7 7 PRO A 134 GLY A 142 1 9 HELIX 8 8 GLY A 143 ASN A 146 5 4 HELIX 9 9 ARG A 147 TYR A 164 1 18 HELIX 10 10 GLU A 176 ASN A 182 5 7 HELIX 11 11 ASP A 186 GLY A 194 1 9 HELIX 12 12 ASP A 202 ASN A 229 1 28 HELIX 13 13 ASN A 249 GLY A 273 1 25 HELIX 14 14 PRO A 276 ALA A 287 1 12 HELIX 15 15 THR A 293 GLY A 303 1 11 HELIX 16 16 PRO A 353 HIS A 368 1 16 HELIX 17 17 ASP A 392 GLU A 412 1 21 HELIX 18 18 LYS A 460 SER A 472 1 13 HELIX 19 19 ALA B 15 GLU B 20 1 6 HELIX 20 20 GLN B 24 LYS B 28 5 5 HELIX 21 21 SER B 31 MET B 36 5 6 HELIX 22 22 ASP B 64 GLY B 80 1 17 HELIX 23 23 ALA B 89 PHE B 94 1 6 HELIX 24 24 ASN B 103 TYR B 120 1 18 HELIX 25 25 PRO B 134 GLY B 142 1 9 HELIX 26 26 GLY B 143 THR B 145 5 3 HELIX 27 27 ASN B 146 TYR B 164 1 19 HELIX 28 28 ASN B 178 ASN B 182 5 5 HELIX 29 29 ASP B 186 GLY B 194 1 9 HELIX 30 30 ASP B 202 ASN B 229 1 28 HELIX 31 31 ASN B 249 GLY B 273 1 25 HELIX 32 32 PRO B 276 ALA B 287 1 12 HELIX 33 33 THR B 293 GLY B 303 1 11 HELIX 34 34 PRO B 353 HIS B 368 1 16 HELIX 35 35 ASP B 392 GLU B 412 1 21 HELIX 36 36 LYS B 460 SER B 472 1 13 SHEET 1 A 9 LEU A 9 ALA A 13 0 SHEET 2 A 9 CYS A 83 SER A 87 1 O ARG A 85 N GLY A 12 SHEET 3 A 9 GLU A 123 SER A 129 1 O VAL A 125 N PHE A 84 SHEET 4 A 9 TYR A 170 PHE A 174 1 O TYR A 170 N VAL A 126 SHEET 5 A 9 ASN A 233 ALA A 239 1 O GLY A 235 N TRP A 171 SHEET 6 A 9 ILE A 308 SER A 311 1 O GLY A 309 N CYS A 236 SHEET 7 A 9 LEU A 371 GLU A 375 1 O PHE A 372 N PHE A 310 SHEET 8 A 9 LEU A 417 TYR A 420 1 O MET A 418 N LEU A 371 SHEET 9 A 9 LEU A 9 ALA A 13 1 N LEU A 9 O MET A 418 SHEET 1 B 3 ILE A 243 PRO A 245 0 SHEET 2 B 3 PHE A 316 ILE A 318 1 O ILE A 318 N TYR A 244 SHEET 3 B 3 LEU A 336 VAL A 337 -1 O VAL A 337 N VAL A 317 SHEET 1 C 2 LYS A 343 ALA A 344 0 SHEET 2 C 2 GLN A 350 ILE A 351 -1 O ILE A 351 N LYS A 343 SHEET 1 D 2 ILE A 443 VAL A 445 0 SHEET 2 D 2 ARG A 457 PRO A 459 -1 O SER A 458 N TYR A 444 SHEET 1 E 9 LEU B 9 ALA B 13 0 SHEET 2 E 9 CYS B 83 SER B 87 1 O ARG B 85 N GLY B 12 SHEET 3 E 9 GLU B 123 SER B 129 1 O VAL B 125 N PHE B 84 SHEET 4 E 9 TYR B 170 PHE B 174 1 O MET B 172 N LEU B 128 SHEET 5 E 9 ASN B 233 ALA B 239 1 O GLY B 235 N TRP B 171 SHEET 6 E 9 ILE B 308 SER B 311 1 O GLY B 309 N CYS B 236 SHEET 7 E 9 LEU B 371 GLU B 375 1 O PHE B 372 N PHE B 310 SHEET 8 E 9 LEU B 417 TYR B 420 1 O MET B 418 N LEU B 371 SHEET 9 E 9 LEU B 9 ALA B 13 1 N LEU B 9 O MET B 418 SHEET 1 F 3 ILE B 243 PRO B 245 0 SHEET 2 F 3 PHE B 316 ILE B 318 1 O PHE B 316 N TYR B 244 SHEET 3 F 3 LEU B 336 VAL B 337 -1 O VAL B 337 N VAL B 317 SHEET 1 G 2 LYS B 343 ALA B 344 0 SHEET 2 G 2 GLN B 350 ILE B 351 -1 O ILE B 351 N LYS B 343 SHEET 1 H 2 ILE B 443 VAL B 445 0 SHEET 2 H 2 ARG B 457 PRO B 459 -1 O SER B 458 N TYR B 444 CRYST1 58.665 92.449 94.351 90.00 101.32 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017046 0.000000 0.003412 0.00000 SCALE2 0.000000 0.010817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010809 0.00000