data_4F73 # _entry.id 4F73 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4F73 RCSB RCSB072537 WWPDB D_1000072537 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4F74 . unspecified PDB 4F75 . unspecified PDB 4F76 . unspecified # _pdbx_database_status.entry_id 4F73 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-05-15 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schiffer, C.A.' 1 'Mittal, S.' 2 'Nalam, M.N.L.' 3 # _citation.id primary _citation.title 'Crystal Structure of active HIV-1 Protease in Complex with the N terminal product of CA-p2 cleavage site' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Mittal, S.' 1 primary 'Nalam, M.N.L.' 2 primary 'Schiffer, C.A.' 3 # _cell.length_a 50.788 _cell.length_b 58.327 _cell.length_c 61.636 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4F73 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 4F73 _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Protease 10801.763 2 3.4.23.16 ? ? ? 2 polymer syn 'N terminal product of substrate CA-p2' 587.755 2 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 water nat water 18.015 83 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PQITLWKRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPVEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; ;PQITLWKRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPVEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; A,B ? 2 'polypeptide(L)' no no KARVL KARVL C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ILE n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 LYS n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 ARG n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 LEU n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 ASN n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 LYS n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 PRO n 1 64 VAL n 1 65 GLU n 1 66 ILE n 1 67 CYS n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 VAL n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 CYS n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n 2 1 LYS n 2 2 ALA n 2 3 ARG n 2 4 VAL n 2 5 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HIV-1 _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene gag-pol _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain SF2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HIV-1 M:B_ARV2/SF2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11685 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain TAP56 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pXC35 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Human immunodeficiency virus 1' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 11676 _pdbx_entity_src_syn.details 'synthetic peptide corresponding to CA-p2 cleavage site' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP POL_HV1A2 P03369 1 ;PQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPVEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; 491 ? 2 PDB 4F73 4F73 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4F73 A 1 ? 99 ? P03369 491 ? 589 ? 1 99 2 1 4F73 B 1 ? 99 ? P03369 491 ? 589 ? 1 99 3 2 4F73 C 1 ? 5 ? 4F73 1 ? 5 ? 1 5 4 2 4F73 D 1 ? 5 ? 4F73 1 ? 5 ? 1 5 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4F73 LYS A 7 ? UNP P03369 GLN 497 'engineered mutation' 7 1 2 4F73 LYS B 7 ? UNP P03369 GLN 497 'engineered mutation' 7 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4F73 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.00 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 38.62 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.temp 295 _exptl_crystal_grow.pdbx_details ;126mM Phosphate buffer pH 6.2, 63mM Sodium Citrate, 24-31% Ammonium Sulfate, hanging drop, vapor diffusion, temperature 295K, VAPOR DIFFUSION, HANGING DROP ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-07-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-C' _diffrn_source.pdbx_wavelength_list 0.9 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-C # _reflns.entry_id 4F73 _reflns.d_resolution_high 1.900 _reflns.d_resolution_low 50.000 _reflns.number_obs 14927 _reflns.pdbx_Rmerge_I_obs 0.086 _reflns.pdbx_netI_over_sigmaI 9.300 _reflns.pdbx_chi_squared 1.038 _reflns.pdbx_redundancy 7.700 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.900 1.970 ? ? ? 0.426 ? ? 1.048 7.900 ? 1457 100.000 1 1 1.970 2.050 ? ? ? 0.310 ? ? 1.065 7.900 ? 1470 100.000 2 1 2.050 2.140 ? ? ? 0.256 ? ? 1.050 7.900 ? 1461 100.000 3 1 2.140 2.250 ? ? ? 0.205 ? ? 1.021 7.900 ? 1461 100.000 4 1 2.250 2.390 ? ? ? 0.180 ? ? 1.030 7.900 ? 1472 100.000 5 1 2.390 2.580 ? ? ? 0.142 ? ? 1.072 7.800 ? 1491 100.000 6 1 2.580 2.840 ? ? ? 0.110 ? ? 1.005 7.800 ? 1481 100.000 7 1 2.840 3.250 ? ? ? 0.084 ? ? 1.046 7.600 ? 1506 100.000 8 1 3.250 4.090 ? ? ? 0.057 ? ? 1.023 7.400 ? 1515 100.000 9 1 4.090 50.000 ? ? ? 0.036 ? ? 1.022 6.900 ? 1613 99.400 10 1 # _refine.entry_id 4F73 _refine.ls_d_res_high 1.9000 _refine.ls_d_res_low 42.3600 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.3200 _refine.ls_number_reflns_obs 14809 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1700 _refine.ls_R_factor_R_work 0.1674 _refine.ls_wR_factor_R_work 0.1652 _refine.ls_R_factor_R_free 0.2225 _refine.ls_wR_factor_R_free 0.2160 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 754 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 25.3862 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.0300 _refine.aniso_B[2][2] -0.0400 _refine.aniso_B[3][3] 1.0600 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9590 _refine.correlation_coeff_Fo_to_Fc_free 0.9300 _refine.overall_SU_R_Cruickshank_DPI 0.1571 _refine.overall_SU_R_free 0.1501 _refine.pdbx_overall_ESU_R 0.1570 _refine.pdbx_overall_ESU_R_Free 0.1500 _refine.overall_SU_ML 0.0920 _refine.overall_SU_B 6.7150 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8725 _refine.B_iso_max 54.400 _refine.B_iso_min 11.990 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1538 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 83 _refine_hist.number_atoms_total 1631 _refine_hist.d_res_high 1.9000 _refine_hist.d_res_low 42.3600 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1646 0.009 0.022 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1109 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2246 1.403 1.988 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2731 0.848 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 215 5.795 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 62 40.788 24.516 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 279 13.012 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 11 21.738 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 265 0.088 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1840 0.005 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 299 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1055 0.646 1.500 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 438 0.201 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1713 1.119 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 591 1.830 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 533 2.839 4.500 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.9030 _refine_ls_shell.d_res_low 1.9520 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.0700 _refine_ls_shell.number_reflns_R_work 1009 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.1700 _refine_ls_shell.R_factor_R_free 0.2130 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1067 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4F73 _struct.title 'Crystal Structure of active HIV-1 Protease in Complex with the N terminal product of CA-p2 cleavage site' _struct.pdbx_descriptor 'Protease (E.C.3.4.23.16), N terminal product of substrate CA-p2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4F73 _struct_keywords.text 'HIV-1 protease, substrate complex, AIDS, product complex, Aspartyl protease, HYDROLASE, hydrolase-hydrolase product complex' _struct_keywords.pdbx_keywords 'hydrolase/hydrolase product' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 5 ? # _struct_biol.id 1 _struct_biol.details 'biological unit is the same as asym.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? THR A 91 ? GLY A 86 THR A 91 1 ? 6 HELX_P HELX_P2 2 GLY B 86 ? THR B 91 ? GLY B 86 THR B 91 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? ILE A 3 ? GLN A 2 ILE A 3 A 2 THR B 96 ? ASN B 98 ? THR B 96 ASN B 98 A 3 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 A 4 GLN B 2 ? ILE B 3 ? GLN B 2 ILE B 3 B 1 LYS A 43 ? GLY A 49 ? LYS A 43 GLY A 49 B 2 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 B 3 HIS A 69 ? VAL A 77 ? HIS A 69 VAL A 77 B 4 VAL A 32 ? LEU A 33 ? VAL A 32 LEU A 33 B 5 ILE A 84 ? ILE A 85 ? ILE A 84 ILE A 85 B 6 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 B 7 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 8 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 C 1 LYS B 43 ? GLY B 49 ? LYS B 43 GLY B 49 C 2 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 C 3 HIS B 69 ? VAL B 77 ? HIS B 69 VAL B 77 C 4 VAL B 32 ? LEU B 33 ? VAL B 32 LEU B 33 C 5 ILE B 84 ? ILE B 85 ? ILE B 84 ILE B 85 C 6 GLN B 18 ? LEU B 24 ? GLN B 18 LEU B 24 C 7 LEU B 10 ? ILE B 15 ? LEU B 10 ILE B 15 C 8 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 3 ? N ILE A 3 O LEU B 97 ? O LEU B 97 A 2 3 O THR B 96 ? O THR B 96 N ASN A 98 ? N ASN A 98 A 3 4 N LEU A 97 ? N LEU A 97 O ILE B 3 ? O ILE B 3 B 1 2 N LYS A 45 ? N LYS A 45 O VAL A 56 ? O VAL A 56 B 2 3 N ILE A 66 ? N ILE A 66 O HIS A 69 ? O HIS A 69 B 3 4 O LEU A 76 ? O LEU A 76 N LEU A 33 ? N LEU A 33 B 4 5 N VAL A 32 ? N VAL A 32 O ILE A 84 ? O ILE A 84 B 5 6 O ILE A 85 ? O ILE A 85 N LEU A 23 ? N LEU A 23 B 6 7 O LYS A 20 ? O LYS A 20 N ILE A 13 ? N ILE A 13 B 7 8 N ARG A 14 ? N ARG A 14 O GLU A 65 ? O GLU A 65 C 1 2 N LYS B 43 ? N LYS B 43 O GLN B 58 ? O GLN B 58 C 2 3 N TYR B 59 ? N TYR B 59 O VAL B 75 ? O VAL B 75 C 3 4 O LEU B 76 ? O LEU B 76 N LEU B 33 ? N LEU B 33 C 4 5 N VAL B 32 ? N VAL B 32 O ILE B 84 ? O ILE B 84 C 5 6 O ILE B 85 ? O ILE B 85 N LEU B 23 ? N LEU B 23 C 6 7 O ALA B 22 ? O ALA B 22 N VAL B 11 ? N VAL B 11 C 7 8 N ARG B 14 ? N ARG B 14 O GLU B 65 ? O GLU B 65 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE ACT A 101' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL A 102' AC3 Software ? ? ? ? 15 'BINDING SITE FOR CHAIN C OF N TERMINAL PRODUCT OF SUBSTRATE CA-P2' AC4 Software ? ? ? ? 12 'BINDING SITE FOR CHAIN D OF N TERMINAL PRODUCT OF SUBSTRATE CA-P2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ARG A 14 ? ARG A 14 . ? 1_555 ? 2 AC1 7 HOH G . ? HOH A 231 . ? 1_555 ? 3 AC1 7 HOH G . ? HOH A 239 . ? 1_555 ? 4 AC1 7 ARG B 14 ? ARG B 14 . ? 1_655 ? 5 AC1 7 GLY B 16 ? GLY B 16 . ? 1_655 ? 6 AC1 7 GLY B 17 ? GLY B 17 . ? 1_655 ? 7 AC1 7 HOH H . ? HOH B 110 . ? 1_655 ? 8 AC2 4 GLU A 21 ? GLU A 21 . ? 1_555 ? 9 AC2 4 GLU A 34 ? GLU A 34 . ? 1_555 ? 10 AC2 4 VAL A 82 ? VAL A 82 . ? 1_555 ? 11 AC2 4 ASN A 83 ? ASN A 83 . ? 1_555 ? 12 AC3 15 ASP A 25 ? ASP A 25 . ? 1_555 ? 13 AC3 15 GLY A 27 ? GLY A 27 . ? 1_555 ? 14 AC3 15 ASP A 29 ? ASP A 29 . ? 1_555 ? 15 AC3 15 ASP A 30 ? ASP A 30 . ? 1_555 ? 16 AC3 15 ILE A 47 ? ILE A 47 . ? 1_555 ? 17 AC3 15 GLY A 48 ? GLY A 48 . ? 1_555 ? 18 AC3 15 GLY A 49 ? GLY A 49 . ? 1_555 ? 19 AC3 15 ILE A 84 ? ILE A 84 . ? 1_555 ? 20 AC3 15 ARG B 8 ? ARG B 8 . ? 1_555 ? 21 AC3 15 ASP B 25 ? ASP B 25 . ? 1_555 ? 22 AC3 15 ILE B 50 ? ILE B 50 . ? 1_555 ? 23 AC3 15 ILE B 84 ? ILE B 84 . ? 1_555 ? 24 AC3 15 HOH I . ? HOH C 101 . ? 1_555 ? 25 AC3 15 VAL D 4 ? VAL D 4 . ? 1_555 ? 26 AC3 15 LEU D 5 ? LEU D 5 . ? 1_555 ? 27 AC4 12 ASP A 25 ? ASP A 25 . ? 1_555 ? 28 AC4 12 ILE A 50 ? ILE A 50 . ? 1_555 ? 29 AC4 12 PRO A 81 ? PRO A 81 . ? 1_555 ? 30 AC4 12 VAL A 82 ? VAL A 82 . ? 1_555 ? 31 AC4 12 GLY B 27 ? GLY B 27 . ? 1_555 ? 32 AC4 12 ALA B 28 ? ALA B 28 . ? 1_555 ? 33 AC4 12 ASP B 29 ? ASP B 29 . ? 1_555 ? 34 AC4 12 GLY B 48 ? GLY B 48 . ? 1_555 ? 35 AC4 12 GLY B 49 ? GLY B 49 . ? 1_555 ? 36 AC4 12 LEU C 5 ? LEU C 5 . ? 1_555 ? 37 AC4 12 HOH I . ? HOH C 101 . ? 1_555 ? 38 AC4 12 HOH J . ? HOH D 101 . ? 1_555 ? # _atom_sites.entry_id 4F73 _atom_sites.fract_transf_matrix[1][1] 0.019690 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017145 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016224 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 1 1 PRO 1 1 1 PRO PRO B . n B 1 2 GLN 2 2 2 GLN GLN B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 THR 4 4 4 THR THR B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 TRP 6 6 6 TRP TRP B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 ARG 8 8 8 ARG ARG B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 VAL 11 11 11 VAL VAL B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 ARG 14 14 14 ARG ARG B . n B 1 15 ILE 15 15 15 ILE ILE B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 GLN 18 18 18 GLN GLN B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 LYS 20 20 20 LYS LYS B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 ASP 25 25 25 ASP ASP B . n B 1 26 THR 26 26 26 THR THR B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 ALA 28 28 28 ALA ALA B . n B 1 29 ASP 29 29 29 ASP ASP B . n B 1 30 ASP 30 30 30 ASP ASP B . n B 1 31 THR 31 31 31 THR THR B . n B 1 32 VAL 32 32 32 VAL VAL B . n B 1 33 LEU 33 33 33 LEU LEU B . n B 1 34 GLU 34 34 34 GLU GLU B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 MET 36 36 36 MET MET B . n B 1 37 ASN 37 37 37 ASN ASN B . n B 1 38 LEU 38 38 38 LEU LEU B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 LYS 41 41 41 LYS LYS B . n B 1 42 TRP 42 42 42 TRP TRP B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 PRO 44 44 44 PRO PRO B . n B 1 45 LYS 45 45 45 LYS LYS B . n B 1 46 MET 46 46 46 MET MET B . n B 1 47 ILE 47 47 47 ILE ILE B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 ILE 50 50 50 ILE ILE B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 PHE 53 53 53 PHE PHE B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 VAL 56 56 56 VAL VAL B . n B 1 57 ARG 57 57 57 ARG ARG B . n B 1 58 GLN 58 58 58 GLN GLN B . n B 1 59 TYR 59 59 59 TYR TYR B . n B 1 60 ASP 60 60 60 ASP ASP B . n B 1 61 GLN 61 61 61 GLN GLN B . n B 1 62 ILE 62 62 62 ILE ILE B . n B 1 63 PRO 63 63 63 PRO PRO B . n B 1 64 VAL 64 64 64 VAL VAL B . n B 1 65 GLU 65 65 65 GLU GLU B . n B 1 66 ILE 66 66 66 ILE ILE B . n B 1 67 CYS 67 67 67 CYS CYS B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 HIS 69 69 69 HIS HIS B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 ALA 71 71 71 ALA ALA B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 PRO 79 79 79 PRO PRO B . n B 1 80 THR 80 80 80 THR THR B . n B 1 81 PRO 81 81 81 PRO PRO B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 ASN 83 83 83 ASN ASN B . n B 1 84 ILE 84 84 84 ILE ILE B . n B 1 85 ILE 85 85 85 ILE ILE B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 ARG 87 87 87 ARG ARG B . n B 1 88 ASN 88 88 88 ASN ASN B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 THR 91 91 91 THR THR B . n B 1 92 GLN 92 92 92 GLN GLN B . n B 1 93 ILE 93 93 93 ILE ILE B . n B 1 94 GLY 94 94 94 GLY GLY B . n B 1 95 CYS 95 95 95 CYS CYS B . n B 1 96 THR 96 96 96 THR THR B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 ASN 98 98 98 ASN ASN B . n B 1 99 PHE 99 99 99 PHE PHE B . n C 2 1 LYS 1 1 ? ? ? C . n C 2 2 ALA 2 2 2 ALA ALA C . n C 2 3 ARG 3 3 3 ARG ALA C . n C 2 4 VAL 4 4 4 VAL VAL C . n C 2 5 LEU 5 5 5 LEU LEU C . n D 2 1 LYS 1 1 ? ? ? D . n D 2 2 ALA 2 2 ? ? ? D . n D 2 3 ARG 3 3 3 ARG ARG D . n D 2 4 VAL 4 4 4 VAL VAL D . n D 2 5 LEU 5 5 5 LEU LEU D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ACT 1 101 1 ACT ACT A . F 4 GOL 1 102 1 GOL GOL A . G 5 HOH 1 201 1 HOH HOH A . G 5 HOH 2 202 2 HOH HOH A . G 5 HOH 3 203 4 HOH HOH A . G 5 HOH 4 204 7 HOH HOH A . G 5 HOH 5 205 8 HOH HOH A . G 5 HOH 6 206 11 HOH HOH A . G 5 HOH 7 207 12 HOH HOH A . G 5 HOH 8 208 15 HOH HOH A . G 5 HOH 9 209 16 HOH HOH A . G 5 HOH 10 210 17 HOH HOH A . G 5 HOH 11 211 18 HOH HOH A . G 5 HOH 12 212 24 HOH HOH A . G 5 HOH 13 213 27 HOH HOH A . G 5 HOH 14 214 28 HOH HOH A . G 5 HOH 15 215 30 HOH HOH A . G 5 HOH 16 216 31 HOH HOH A . G 5 HOH 17 217 33 HOH HOH A . G 5 HOH 18 218 36 HOH HOH A . G 5 HOH 19 219 37 HOH HOH A . G 5 HOH 20 220 38 HOH HOH A . G 5 HOH 21 221 39 HOH HOH A . G 5 HOH 22 222 41 HOH HOH A . G 5 HOH 23 223 43 HOH HOH A . G 5 HOH 24 224 44 HOH HOH A . G 5 HOH 25 225 46 HOH HOH A . G 5 HOH 26 226 47 HOH HOH A . G 5 HOH 27 227 48 HOH HOH A . G 5 HOH 28 228 49 HOH HOH A . G 5 HOH 29 229 51 HOH HOH A . G 5 HOH 30 230 52 HOH HOH A . G 5 HOH 31 231 55 HOH HOH A . G 5 HOH 32 232 57 HOH HOH A . G 5 HOH 33 233 58 HOH HOH A . G 5 HOH 34 234 60 HOH HOH A . G 5 HOH 35 235 61 HOH HOH A . G 5 HOH 36 236 63 HOH HOH A . G 5 HOH 37 237 65 HOH HOH A . G 5 HOH 38 238 68 HOH HOH A . G 5 HOH 39 239 71 HOH HOH A . G 5 HOH 40 240 72 HOH HOH A . G 5 HOH 41 241 73 HOH HOH A . G 5 HOH 42 242 74 HOH HOH A . G 5 HOH 43 243 76 HOH HOH A . G 5 HOH 44 244 77 HOH HOH A . G 5 HOH 45 245 78 HOH HOH A . G 5 HOH 46 246 85 HOH HOH A . H 5 HOH 1 101 3 HOH HOH B . H 5 HOH 2 102 6 HOH HOH B . H 5 HOH 3 103 9 HOH HOH B . H 5 HOH 4 104 10 HOH HOH B . H 5 HOH 5 105 13 HOH HOH B . H 5 HOH 6 106 14 HOH HOH B . H 5 HOH 7 107 19 HOH HOH B . H 5 HOH 8 108 20 HOH HOH B . H 5 HOH 9 109 21 HOH HOH B . H 5 HOH 10 110 22 HOH HOH B . H 5 HOH 11 111 23 HOH HOH B . H 5 HOH 12 112 25 HOH HOH B . H 5 HOH 13 113 26 HOH HOH B . H 5 HOH 14 114 29 HOH HOH B . H 5 HOH 15 115 32 HOH HOH B . H 5 HOH 16 116 34 HOH HOH B . H 5 HOH 17 117 35 HOH HOH B . H 5 HOH 18 118 40 HOH HOH B . H 5 HOH 19 119 42 HOH HOH B . H 5 HOH 20 120 45 HOH HOH B . H 5 HOH 21 121 50 HOH HOH B . H 5 HOH 22 122 53 HOH HOH B . H 5 HOH 23 123 56 HOH HOH B . H 5 HOH 24 124 59 HOH HOH B . H 5 HOH 25 125 62 HOH HOH B . H 5 HOH 26 126 64 HOH HOH B . H 5 HOH 27 127 66 HOH HOH B . H 5 HOH 28 128 67 HOH HOH B . H 5 HOH 29 129 70 HOH HOH B . H 5 HOH 30 130 75 HOH HOH B . H 5 HOH 31 131 79 HOH HOH B . H 5 HOH 32 132 81 HOH HOH B . H 5 HOH 33 133 82 HOH HOH B . H 5 HOH 34 134 83 HOH HOH B . H 5 HOH 35 135 84 HOH HOH B . I 5 HOH 1 101 5 HOH HOH C . J 5 HOH 1 101 54 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5670 ? 1 MORE -36 ? 1 'SSA (A^2)' 8980 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-15 2 'Structure model' 1 1 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.classification' 2 2 'Structure model' '_software.contact_author' 3 2 'Structure model' '_software.contact_author_email' 4 2 'Structure model' '_software.date' 5 2 'Structure model' '_software.language' 6 2 'Structure model' '_software.location' 7 2 'Structure model' '_software.name' 8 2 'Structure model' '_software.type' 9 2 'Structure model' '_software.version' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 20.6752 1.7574 -1.9366 0.3482 0.1760 0.0543 -0.0989 -0.0376 -0.0376 8.8845 6.5263 9.8758 3.0818 -7.3156 -7.1201 -0.0850 0.0791 0.0059 0.2156 -0.0156 -0.0058 -0.4851 0.4110 -0.1783 'X-RAY DIFFRACTION' 2 ? refined 31.1985 -2.4079 6.0633 0.1546 0.0756 0.0817 -0.0070 0.0563 -0.0055 13.6910 2.7918 0.9658 1.2729 3.4986 0.6928 0.1067 0.0115 -0.1182 0.2458 -0.4614 -0.2552 -0.1305 0.0604 0.0542 'X-RAY DIFFRACTION' 3 ? refined 38.3647 -4.2952 8.4067 0.1520 0.0596 0.2131 0.0359 0.0751 0.0162 7.9165 5.1598 2.5425 1.5444 -0.1449 2.2110 -0.2602 0.2098 0.0504 -0.1472 -0.4108 -0.5871 -0.2113 0.1987 0.0723 'X-RAY DIFFRACTION' 4 ? refined 23.7308 2.2434 10.7020 0.1493 0.0676 0.0644 -0.0002 0.0269 0.0139 5.8338 8.0848 4.8816 -5.4743 -3.7879 6.2156 -0.1207 -0.0003 0.1210 -0.0234 -0.2266 0.1684 0.1748 0.1855 0.0059 'X-RAY DIFFRACTION' 5 ? refined 30.8673 -0.8011 17.6917 0.0740 0.0789 0.0573 -0.0336 -0.0015 -0.0044 14.0735 22.1202 3.3923 -12.9177 0.2687 -1.0632 -0.2729 0.2250 0.0478 -0.3748 -0.3566 -0.0576 0.4102 0.1320 0.1051 'X-RAY DIFFRACTION' 6 ? refined 42.8869 -1.3062 20.0256 0.1591 0.2436 0.2404 0.0319 -0.0192 0.0596 10.7168 11.0682 11.1053 3.6265 -1.5719 9.8129 -0.0998 0.3495 -0.2497 -0.1932 -0.3994 -0.4219 -0.1927 -0.1620 0.4810 'X-RAY DIFFRACTION' 7 ? refined 34.8899 1.6681 28.7140 0.1518 0.1547 0.0756 -0.0261 -0.0423 -0.0395 22.7631 3.8590 6.5826 -0.9744 -5.8217 -0.9472 0.1549 -0.1381 -0.0167 -1.1548 0.7643 -0.1929 0.2662 0.1739 0.5523 'X-RAY DIFFRACTION' 8 ? refined 21.0657 -2.0905 24.6377 0.1799 0.1874 0.1920 -0.0215 -0.0060 0.0421 3.1386 5.5523 1.7399 1.0696 -0.8452 2.5125 -0.1023 0.0259 0.0764 0.1055 0.6791 0.6969 0.0476 0.0689 -0.0426 'X-RAY DIFFRACTION' 9 ? refined 32.6805 -1.3087 25.9919 0.1087 0.1682 0.0404 -0.0004 -0.0330 0.0045 14.8625 9.8402 4.2939 10.1556 -7.1033 -4.2391 0.2281 -0.2795 0.0515 -0.3422 -0.0774 -0.1495 0.4646 -0.0542 0.4970 'X-RAY DIFFRACTION' 10 ? refined 40.1087 6.5695 18.6142 0.0958 0.2205 0.2354 -0.0042 -0.0316 -0.0245 1.7371 5.1944 11.9010 2.0533 -0.6179 -6.4137 0.2302 -0.6418 0.4116 -0.3591 -0.0646 -0.2676 0.2476 -0.0613 0.6477 'X-RAY DIFFRACTION' 11 ? refined 36.2934 5.6181 4.5856 0.1258 0.0886 0.1140 0.0011 0.0707 -0.0320 7.7874 11.5420 19.5422 -1.7816 5.6428 -6.4069 0.2033 0.0323 -0.2355 0.7428 -0.2827 -0.1851 -0.6267 -0.0894 0.3076 'X-RAY DIFFRACTION' 12 ? refined 34.2640 2.4658 17.3006 0.0233 0.0603 0.0791 0.0050 0.0073 -0.0002 0.8950 5.0045 2.1696 0.1403 0.7647 -0.7657 0.0247 -0.0439 0.0191 -0.1493 0.0352 -0.1301 0.2019 -0.0419 0.0508 'X-RAY DIFFRACTION' 13 ? refined 28.2495 -2.4422 13.3172 0.1823 0.1227 0.1551 -0.0219 0.0072 0.0125 1.5523 13.4695 3.1269 -4.4780 2.0683 -5.5210 0.0828 0.2030 -0.2859 -0.0748 -0.1636 0.4298 0.0334 0.3539 -0.0760 'X-RAY DIFFRACTION' 14 ? refined 29.3238 10.2035 10.6211 0.0604 0.0611 0.0750 -0.0069 0.0202 -0.0119 5.4496 4.7184 0.5832 1.6282 1.6597 -0.0766 -0.0627 0.0328 0.0299 0.0729 0.0801 -0.0692 -0.1223 -0.0049 0.0237 'X-RAY DIFFRACTION' 15 ? refined 18.5405 10.4992 2.7858 0.1738 0.1342 0.0901 -0.0048 -0.0250 -0.0016 5.4341 9.2499 9.6303 7.0826 5.0147 6.2407 -0.2647 -0.2741 0.5388 -0.2238 0.2886 0.3594 -0.3307 -0.3148 -0.3741 'X-RAY DIFFRACTION' 16 ? refined 20.3122 14.7913 7.5855 0.2397 0.1293 0.1777 0.0083 -0.0499 0.0108 10.2262 4.0452 9.3087 3.8126 7.4671 3.5789 -0.2123 -0.0268 0.2391 0.3565 0.6234 0.4509 -0.5176 -0.4021 0.0352 'X-RAY DIFFRACTION' 17 ? refined 14.3136 10.8941 13.9640 0.1338 0.1222 0.2203 0.0222 0.0277 0.0052 28.1231 0.3465 3.2396 -0.2063 0.8052 0.9638 -0.1940 -0.0028 0.1968 -0.6395 0.3358 0.1555 0.0385 0.0060 -0.0817 'X-RAY DIFFRACTION' 18 ? refined -0.4403 5.4836 12.3681 0.2046 0.3977 0.2756 0.0267 0.0328 -0.0358 11.6534 13.3351 4.6666 7.4068 -1.7450 5.0549 0.1955 -0.5886 0.3931 -0.0834 0.6597 1.0812 0.6499 0.3425 -0.3906 'X-RAY DIFFRACTION' 19 ? refined 8.5092 7.7851 14.1610 0.1249 0.1171 0.1421 -0.0115 0.0181 -0.0123 18.0577 5.2499 3.9105 -4.7001 -6.1148 2.3258 0.0658 -0.1480 0.0821 -0.1172 -0.1791 0.2397 0.2814 -0.2767 -0.2642 'X-RAY DIFFRACTION' 20 ? refined 15.9306 -2.2874 9.9171 0.1133 0.0988 0.0939 -0.0119 -0.0280 0.0152 9.3335 7.3252 2.0626 4.5505 -3.2234 -0.2605 -0.0179 -0.0059 0.0238 -0.0660 -0.4918 -0.3162 -0.0239 0.2511 -0.0125 'X-RAY DIFFRACTION' 21 ? refined 6.4821 -0.6135 19.6640 0.1212 0.0817 0.0998 -0.0248 0.0272 0.0406 23.7188 5.4924 26.9482 0.7605 -15.4536 4.5307 0.4027 -0.1986 -0.2041 -0.7575 -0.0282 0.3610 0.2568 -0.5393 -0.0037 'X-RAY DIFFRACTION' 22 ? refined -2.9660 -4.8718 16.6875 0.1643 0.2792 0.2297 0.0200 -0.0250 0.1040 14.5067 17.4626 7.9640 9.3641 7.9091 11.5581 0.1036 -0.5287 0.4251 -0.2434 0.6904 0.5960 -0.1338 -0.0555 -0.3706 'X-RAY DIFFRACTION' 23 ? refined 5.7975 -13.5602 16.8243 0.0955 0.0990 0.1177 -0.0530 -0.0173 0.0462 39.7915 4.1853 5.1517 -4.9981 4.4504 -2.2008 -0.2290 0.4725 -0.2435 -0.6731 -0.2819 0.3611 -0.1837 0.3476 -0.4525 'X-RAY DIFFRACTION' 24 ? refined 18.9716 -8.6362 20.0218 0.0932 0.0661 0.0771 -0.0245 -0.0207 0.0441 13.9286 7.7858 6.1372 10.2041 1.3094 2.3149 -0.0517 0.0973 -0.0456 0.1320 0.0854 0.0352 -0.0755 -0.2330 0.1142 'X-RAY DIFFRACTION' 25 ? refined 7.4964 -10.0407 18.9353 0.0721 0.0671 0.0901 -0.0204 0.0034 0.0366 11.2788 4.3015 10.6567 0.9273 6.7635 -1.4145 0.2135 0.2248 -0.4383 -0.2917 -0.1148 0.3946 0.0897 0.4228 -0.1559 'X-RAY DIFFRACTION' 26 ? refined 0.5923 -5.8425 8.5685 0.1233 0.1606 0.1392 -0.0606 -0.0256 0.0547 11.5061 10.6092 8.2225 -6.6049 5.8659 -9.3384 0.3077 -0.0657 -0.2420 0.1713 -0.5218 0.2435 -0.5745 0.5092 0.0294 'X-RAY DIFFRACTION' 27 ? refined 4.8845 7.5625 4.7580 0.1474 0.1486 0.1774 -0.0348 -0.0679 0.0430 4.0655 0.3932 15.3834 0.6085 -4.3655 0.9461 0.0603 -0.1843 0.1240 -0.2227 0.4792 0.1051 0.0018 -0.4611 -0.0295 'X-RAY DIFFRACTION' 28 ? refined 3.5257 -1.3809 5.1613 0.1092 0.1151 0.1430 -0.0152 -0.0180 0.0129 1.8971 13.2360 12.9128 -2.5384 4.2795 -11.3684 0.0343 0.1871 -0.2215 0.0010 -0.0011 0.4831 0.2575 -0.1482 -0.1042 'X-RAY DIFFRACTION' 29 ? refined 9.1335 -3.4568 20.0745 0.1158 0.1481 0.0932 -0.0198 0.0163 0.0511 6.3830 6.8446 7.5382 2.8373 -2.0433 -0.2136 0.1775 -0.1931 0.0156 -0.7345 -0.0902 -0.0085 0.4026 -0.6606 0.3328 'X-RAY DIFFRACTION' 30 ? refined 12.7899 0.8863 12.1795 0.0475 0.0378 0.0519 -0.0224 -0.0060 0.0148 5.6682 8.3891 12.8650 -1.3079 -6.3735 5.8695 0.1298 0.1106 -0.2404 -0.2266 0.1581 0.1238 0.3103 0.1400 0.1772 'X-RAY DIFFRACTION' 31 ? refined 10.7311 1.0207 2.3419 0.1903 0.2107 0.1232 -0.0578 -0.0517 0.0406 2.0792 4.7046 2.9636 -0.6505 2.4582 -1.2584 -0.1856 0.1969 -0.0113 0.0236 0.0518 0.4054 -0.2943 -0.1347 -0.0103 'X-RAY DIFFRACTION' 32 ? refined 22.8389 7.3731 0.7205 0.1353 0.0904 0.0372 -0.0372 0.0024 -0.0183 32.7972 8.3569 3.9872 8.2331 4.1549 -1.5922 -0.4092 0.3957 0.0135 0.2450 -0.0530 -0.1448 -0.4841 0.1700 0.1990 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 6 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 7 A 16 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 17 A 22 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 23 A 28 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 A 29 A 35 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 A 36 A 41 ? . . . . ? 'X-RAY DIFFRACTION' 7 7 A 42 A 46 ? . . . . ? 'X-RAY DIFFRACTION' 8 8 A 47 A 53 ? . . . . ? 'X-RAY DIFFRACTION' 9 9 A 54 A 58 ? . . . . ? 'X-RAY DIFFRACTION' 10 10 A 59 A 63 ? . . . . ? 'X-RAY DIFFRACTION' 11 11 A 64 A 69 ? . . . . ? 'X-RAY DIFFRACTION' 12 12 A 70 A 80 ? . . . . ? 'X-RAY DIFFRACTION' 13 13 A 81 A 86 ? . . . . ? 'X-RAY DIFFRACTION' 14 14 A 87 A 94 ? . . . . ? 'X-RAY DIFFRACTION' 15 15 A 95 A 99 ? . . . . ? 'X-RAY DIFFRACTION' 16 16 B 1 B 6 ? . . . . ? 'X-RAY DIFFRACTION' 17 17 B 7 B 12 ? . . . . ? 'X-RAY DIFFRACTION' 18 18 B 13 B 18 ? . . . . ? 'X-RAY DIFFRACTION' 19 19 B 19 B 24 ? . . . . ? 'X-RAY DIFFRACTION' 20 20 B 25 B 31 ? . . . . ? 'X-RAY DIFFRACTION' 21 21 B 32 B 35 ? . . . . ? 'X-RAY DIFFRACTION' 22 22 B 36 B 41 ? . . . . ? 'X-RAY DIFFRACTION' 23 23 B 42 B 46 ? . . . . ? 'X-RAY DIFFRACTION' 24 24 B 47 B 53 ? . . . . ? 'X-RAY DIFFRACTION' 25 25 B 54 B 58 ? . . . . ? 'X-RAY DIFFRACTION' 26 26 B 59 B 63 ? . . . . ? 'X-RAY DIFFRACTION' 27 27 B 64 B 69 ? . . . . ? 'X-RAY DIFFRACTION' 28 28 B 70 B 75 ? . . . . ? 'X-RAY DIFFRACTION' 29 29 B 76 B 81 ? . . . . ? 'X-RAY DIFFRACTION' 30 30 B 82 B 87 ? . . . . ? 'X-RAY DIFFRACTION' 31 31 B 88 B 94 ? . . . . ? 'X-RAY DIFFRACTION' 32 32 B 95 B 99 ? . . . . ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # _pdbx_entry_details.entry_id 4F73 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;AUTHORS CRYSTALLIZED ACTIVE PROTEASE WITH 10-MER LENGTH PEPTIDE CORRESPONDING TO CA-P2 CLEAVAGE SITE. DURING CRYSTALLIZATION, PROTEASE CLEAVED THE 10-MER PEPTIDE TO TWO 5-MER PRODUCTS (N-TERMINAL KARVL*AEAMS C-TERMINAL, WHERE * INDICATES SITE OF HYDROLYSIS). INITIALLY N-TERMINAL PRODUCT IS MODELED IN THE STRUCTURE AS K1-A2-R3-V4-L5*. THE C-TERMINAL PRODUCT THAT SHOULD HAVE BEEN THEORETICALLY PRESENT NEXT TO N-TERMINAL PRODUCT IN THE PROTEASE ACTIVE SITE MAY HAVE PROBABLY DIFFUSED AWAY POST CLEAVAGE AND (THE DENSITY FOR IT) IS ABSENT IN THE CRYSTAL STRUCTURE. WHAT AUTHORS OBSERVED IS A PARTIAL DENSITY FOR ANOTHER N-TERMINAL PRODUCT FRAGMENT IN ITS PLACE. THIS IS BECAUSE THE CRYSTALLIZED DIMER IS NOT UNIQUELY ORIENTED IN THE CRYSTAL LATTICE. POSSIBLY DUE TO THE AVERAGING OF ELECTRON DENSITY OF ANOTHER PROTEASE DIMER WITH N-TERMINAL PRODUCT THAT IS IN THE OPPOSITE ORIENTATION AS THE FIRST LEADS TO THE OVERALL IMPRESSION OF TWO, SEPARATE N-TERMINAL PRODUCTS BEING PRESENT IN THE ACTIVE SITE OF THE CRYSTALLIZED PROTEASE DIMER. THEREFORE, ARVL*LVR IS MODELELD IN ACTIVE SITE WHICH IS NOTHING BUT TWO n-TERMINAL PEPTIDES IN OPPOSITE DIRECTIONS. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 7 ? CG ? A LYS 7 CG 2 1 Y 1 A LYS 7 ? CD ? A LYS 7 CD 3 1 Y 1 A LYS 7 ? CE ? A LYS 7 CE 4 1 Y 1 A LYS 7 ? NZ ? A LYS 7 NZ 5 1 Y 1 A LYS 41 ? CG ? A LYS 41 CG 6 1 Y 1 A LYS 41 ? CD ? A LYS 41 CD 7 1 Y 1 A LYS 41 ? CE ? A LYS 41 CE 8 1 Y 1 A LYS 41 ? NZ ? A LYS 41 NZ 9 1 Y 1 A LYS 43 ? CG ? A LYS 43 CG 10 1 Y 1 A LYS 43 ? CD ? A LYS 43 CD 11 1 Y 1 A LYS 43 ? CE ? A LYS 43 CE 12 1 Y 1 A LYS 43 ? NZ ? A LYS 43 NZ 13 1 Y 1 A LYS 45 ? CG ? A LYS 45 CG 14 1 Y 1 A LYS 45 ? CD ? A LYS 45 CD 15 1 Y 1 A LYS 45 ? CE ? A LYS 45 CE 16 1 Y 1 A LYS 45 ? NZ ? A LYS 45 NZ 17 1 Y 1 A LYS 70 ? CG ? A LYS 70 CG 18 1 Y 1 A LYS 70 ? CD ? A LYS 70 CD 19 1 Y 1 A LYS 70 ? CE ? A LYS 70 CE 20 1 Y 1 A LYS 70 ? NZ ? A LYS 70 NZ 21 1 Y 1 B LYS 7 ? CG ? B LYS 7 CG 22 1 Y 1 B LYS 7 ? CD ? B LYS 7 CD 23 1 Y 1 B LYS 7 ? CE ? B LYS 7 CE 24 1 Y 1 B LYS 7 ? NZ ? B LYS 7 NZ 25 1 Y 1 B LYS 41 ? CG ? B LYS 41 CG 26 1 Y 1 B LYS 41 ? CD ? B LYS 41 CD 27 1 Y 1 B LYS 41 ? CE ? B LYS 41 CE 28 1 Y 1 B LYS 41 ? NZ ? B LYS 41 NZ 29 1 Y 1 C ARG 3 ? CG ? C ARG 3 CG 30 1 Y 1 C ARG 3 ? CD ? C ARG 3 CD 31 1 Y 1 C ARG 3 ? NE ? C ARG 3 NE 32 1 Y 1 C ARG 3 ? CZ ? C ARG 3 CZ 33 1 Y 1 C ARG 3 ? NH1 ? C ARG 3 NH1 34 1 Y 1 C ARG 3 ? NH2 ? C ARG 3 NH2 35 1 Y 1 D LEU 5 ? C ? D LEU 5 C 36 1 Y 1 D LEU 5 ? O ? D LEU 5 O # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C LYS 1 ? C LYS 1 2 1 Y 1 D LYS 1 ? D LYS 1 3 1 Y 1 D ALA 2 ? D ALA 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ACETATE ION' ACT 4 GLYCEROL GOL 5 water HOH #