HEADER HYDROLASE 15-MAY-12 4F79 TITLE THE CRYSTAL STRUCTURE OF 6-PHOSPHO-BETA-GLUCOSIDASE MUTANT (E375Q) IN TITLE 2 COMPLEX WITH SALICIN 6-PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHOSPHO-BETA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.86; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS MUTANS; SOURCE 3 ORGANISM_TAXID: 1309; SOURCE 4 STRAIN: UA159; SOURCE 5 GENE: BGL, SMU_1601; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,K.MICHALSKA,H.LI,R.JEDRZEJCZAK,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 13-SEP-23 4F79 1 HETSYN REVDAT 3 29-JUL-20 4F79 1 REMARK SEQADV SITE ATOM REVDAT 2 15-NOV-17 4F79 1 JRNL REVDAT 1 13-JUN-12 4F79 0 JRNL AUTH K.MICHALSKA,K.TAN,H.LI,C.HATZOS-SKINTGES,J.BEARDEN, JRNL AUTH 2 G.BABNIGG,A.JOACHIMIAK JRNL TITL GH1-FAMILY 6-P-BETA-GLUCOSIDASES FROM HUMAN MICROBIOME JRNL TITL 2 LACTIC ACID BACTERIA. JRNL REF ACTA CRYSTALLOGR. D BIOL. V. 69 451 2013 JRNL REF 2 CRYSTALLOGR. JRNL REFN ESSN 1399-0047 JRNL PMID 23519420 JRNL DOI 10.1107/S0907444912049608 REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 25791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9707 - 5.2789 0.98 2895 155 0.1793 0.1990 REMARK 3 2 5.2789 - 4.1916 0.99 2772 135 0.1406 0.1866 REMARK 3 3 4.1916 - 3.6622 0.99 2740 140 0.1529 0.2276 REMARK 3 4 3.6622 - 3.3276 1.00 2708 145 0.1929 0.2141 REMARK 3 5 3.3276 - 3.0892 1.00 2694 166 0.2073 0.2874 REMARK 3 6 3.0892 - 2.9071 1.00 2688 147 0.2222 0.2738 REMARK 3 7 2.9071 - 2.7615 1.00 2683 145 0.2212 0.2981 REMARK 3 8 2.7615 - 2.6414 1.00 2679 137 0.2286 0.2688 REMARK 3 9 2.6414 - 2.5400 0.98 2620 142 0.2583 0.3441 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 47.87 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.630 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.54270 REMARK 3 B22 (A**2) : 7.54270 REMARK 3 B33 (A**2) : -15.08550 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4054 REMARK 3 ANGLE : 1.058 5489 REMARK 3 CHIRALITY : 0.071 549 REMARK 3 PLANARITY : 0.004 710 REMARK 3 DIHEDRAL : 16.843 1457 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 0:50) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2563 -4.8419 13.7196 REMARK 3 T TENSOR REMARK 3 T11: 0.5236 T22: 0.3910 REMARK 3 T33: 0.3909 T12: 0.0277 REMARK 3 T13: -0.1427 T23: 0.0445 REMARK 3 L TENSOR REMARK 3 L11: 2.5135 L22: 4.4234 REMARK 3 L33: 3.1803 L12: -1.4246 REMARK 3 L13: -0.4765 L23: -0.4725 REMARK 3 S TENSOR REMARK 3 S11: -0.0316 S12: 0.0755 S13: -0.2398 REMARK 3 S21: -0.1206 S22: -0.1979 S23: -0.4420 REMARK 3 S31: 0.7736 S32: 0.4322 S33: 0.1964 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 51:120) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3550 -13.6436 18.3255 REMARK 3 T TENSOR REMARK 3 T11: 0.7993 T22: 0.4722 REMARK 3 T33: 0.4346 T12: -0.0031 REMARK 3 T13: -0.2045 T23: 0.1569 REMARK 3 L TENSOR REMARK 3 L11: 2.0804 L22: 3.2598 REMARK 3 L33: 3.0082 L12: -0.3639 REMARK 3 L13: 0.0929 L23: 0.5417 REMARK 3 S TENSOR REMARK 3 S11: 0.2859 S12: -0.1140 S13: -0.4295 REMARK 3 S21: 0.0276 S22: -0.2283 S23: -0.3150 REMARK 3 S31: 1.3349 S32: 0.3158 S33: -0.0919 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 121:202) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8074 -10.0699 2.9831 REMARK 3 T TENSOR REMARK 3 T11: 1.0554 T22: 0.3163 REMARK 3 T33: 0.4334 T12: 0.0596 REMARK 3 T13: -0.0580 T23: 0.0521 REMARK 3 L TENSOR REMARK 3 L11: 1.7766 L22: 2.2524 REMARK 3 L33: 1.9678 L12: -0.2823 REMARK 3 L13: 1.5728 L23: -1.4276 REMARK 3 S TENSOR REMARK 3 S11: 0.3633 S12: -0.0060 S13: -0.3174 REMARK 3 S21: -0.4949 S22: -0.4675 S23: -0.2091 REMARK 3 S31: 1.7504 S32: 0.9107 S33: 0.1556 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 203:272) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1103 2.6029 -1.1384 REMARK 3 T TENSOR REMARK 3 T11: 0.4518 T22: 0.3069 REMARK 3 T33: 0.3244 T12: -0.0589 REMARK 3 T13: -0.0668 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 1.5524 L22: 2.3397 REMARK 3 L33: 3.0254 L12: 0.1091 REMARK 3 L13: 0.7368 L23: -1.1840 REMARK 3 S TENSOR REMARK 3 S11: 0.2391 S12: 0.0690 S13: -0.0802 REMARK 3 S21: -0.4395 S22: -0.1794 S23: 0.0826 REMARK 3 S31: 0.8282 S32: 0.0222 S33: -0.0238 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 273:302) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1338 -2.1954 -12.0517 REMARK 3 T TENSOR REMARK 3 T11: 0.8252 T22: 0.3970 REMARK 3 T33: 0.3721 T12: -0.0876 REMARK 3 T13: -0.1706 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 5.7215 L22: 4.4027 REMARK 3 L33: 4.6040 L12: 0.1971 REMARK 3 L13: -1.5824 L23: -0.7494 REMARK 3 S TENSOR REMARK 3 S11: -0.0090 S12: 0.3692 S13: -0.2350 REMARK 3 S21: -0.8280 S22: 0.0092 S23: 0.3067 REMARK 3 S31: 0.9531 S32: -0.5432 S33: 0.0110 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 303:352) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0515 13.3012 1.0916 REMARK 3 T TENSOR REMARK 3 T11: 0.3502 T22: 0.5229 REMARK 3 T33: 0.5384 T12: 0.0152 REMARK 3 T13: -0.0323 T23: 0.1357 REMARK 3 L TENSOR REMARK 3 L11: 0.6407 L22: 2.2996 REMARK 3 L33: 5.2937 L12: -0.0566 REMARK 3 L13: 1.0083 L23: -1.2455 REMARK 3 S TENSOR REMARK 3 S11: -0.0572 S12: 0.1931 S13: 0.1807 REMARK 3 S21: -0.1153 S22: -0.2382 S23: -0.5185 REMARK 3 S31: 0.0062 S32: 0.7602 S33: 0.2751 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 353:477) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5014 7.0064 20.4412 REMARK 3 T TENSOR REMARK 3 T11: 0.4454 T22: 0.4397 REMARK 3 T33: 0.4412 T12: -0.1314 REMARK 3 T13: -0.1401 T23: 0.0689 REMARK 3 L TENSOR REMARK 3 L11: 1.8437 L22: 2.6378 REMARK 3 L33: 3.0529 L12: -1.1687 REMARK 3 L13: -0.0532 L23: -0.7834 REMARK 3 S TENSOR REMARK 3 S11: -0.0509 S12: -0.4054 S13: 0.1952 REMARK 3 S21: 0.4567 S22: -0.1620 S23: -0.6011 REMARK 3 S31: 0.1475 S32: 0.5002 S33: 0.1860 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4F79 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072543. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25874 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 39.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.63600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY: 3PN8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES:NAOH, 25% (W/V) PEG3350, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 110.60550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.13900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.13900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.30275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.13900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.13900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 165.90825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.13900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.13900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.30275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.13900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.13900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 165.90825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 110.60550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: IT IS PREDICTED TO BE MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 475 O HOH A 625 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 62 -120.90 44.26 REMARK 500 ALA A 89 104.63 -59.16 REMARK 500 GLU A 132 40.12 -152.12 REMARK 500 GLU A 334 -35.21 -130.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PN8 RELATED DB: PDB REMARK 900 WILD TYPE REMARK 900 RELATED ID: 4F66 RELATED DB: PDB REMARK 900 A COMPLEX WITH BETA-D-GLUCOSE-6-PHOSPHATE REMARK 900 RELATED ID: MCSG-APC100193 RELATED DB: TARGETTRACK DBREF 4F79 A 1 477 UNP Q8DT00 Q8DT00_STRMU 1 477 SEQADV 4F79 SER A -2 UNP Q8DT00 EXPRESSION TAG SEQADV 4F79 ASN A -1 UNP Q8DT00 EXPRESSION TAG SEQADV 4F79 ALA A 0 UNP Q8DT00 EXPRESSION TAG SEQADV 4F79 GLN A 375 UNP Q8DT00 GLU 375 ENGINEERED MUTATION SEQRES 1 A 480 SER ASN ALA MET SER LYS LEU PRO GLU ASN PHE LEU TRP SEQRES 2 A 480 GLY GLY ALA VAL ALA ALA HIS GLN LEU GLU GLY GLY TRP SEQRES 3 A 480 GLN GLU GLY GLY LYS GLY ILE SER VAL ALA ASP VAL MET SEQRES 4 A 480 THR ALA GLY ARG HIS GLY VAL ALA ARG GLU ILE THR ALA SEQRES 5 A 480 GLY VAL LEU GLU GLY LYS TYR TYR PRO ASN HIS GLU ALA SEQRES 6 A 480 ILE ASP PHE TYR HIS HIS TYR LYS GLU ASP VAL LYS LEU SEQRES 7 A 480 PHE ALA GLU MET GLY PHE LYS CYS PHE ARG THR SER ILE SEQRES 8 A 480 ALA TRP THR ARG ILE PHE PRO LYS GLY ASP GLU ALA GLU SEQRES 9 A 480 PRO ASN GLU ALA GLY LEU GLN PHE TYR ASP ASP LEU PHE SEQRES 10 A 480 ASP GLU CYS LEU LYS TYR GLY ILE GLU PRO VAL VAL THR SEQRES 11 A 480 LEU SER HIS PHE GLU LEU PRO TYR HIS LEU VAL THR GLU SEQRES 12 A 480 TYR GLY GLY PHE THR ASN ARG LYS VAL ILE ASP PHE PHE SEQRES 13 A 480 VAL HIS PHE ALA GLU VAL CYS PHE ARG ARG TYR LYS ASP SEQRES 14 A 480 LYS VAL LYS TYR TRP MET THR PHE ASN GLU ILE ASN ASN SEQRES 15 A 480 GLN ALA ASN TYR GLN GLU ASP PHE ALA PRO PHE THR ASN SEQRES 16 A 480 SER GLY ILE VAL TYR LYS GLU GLY ASP ASP ARG GLU ALA SEQRES 17 A 480 ILE MET TYR GLN ALA ALA HIS TYR GLU LEU VAL ALA SER SEQRES 18 A 480 ALA ARG ALA VAL LYS ILE GLY HIS ALA ILE ASN PRO ASN SEQRES 19 A 480 LEU ASN ILE GLY CYS MET VAL ALA MET CYS PRO ILE TYR SEQRES 20 A 480 PRO ALA THR CYS ASN PRO LYS ASP ILE LEU MET ALA GLN SEQRES 21 A 480 LYS ALA MET GLN LYS ARG TYR TYR PHE ALA ASP VAL HIS SEQRES 22 A 480 VAL HIS GLY PHE TYR PRO GLU HIS ILE PHE LYS TYR TRP SEQRES 23 A 480 GLU ARG LYS ALA ILE LYS VAL ASP PHE THR GLU ARG ASP SEQRES 24 A 480 LYS LYS ASP LEU PHE GLU GLY THR VAL ASP TYR ILE GLY SEQRES 25 A 480 PHE SER TYR TYR MET SER PHE VAL ILE ASP ALA HIS ARG SEQRES 26 A 480 GLU ASN ASN PRO TYR TYR ASP TYR LEU GLU THR GLU ASP SEQRES 27 A 480 LEU VAL LYS ASN PRO TYR VAL LYS ALA SER ASP TRP ASP SEQRES 28 A 480 TRP GLN ILE ASP PRO GLN GLY LEU ARG TYR ALA LEU ASN SEQRES 29 A 480 TRP PHE THR ASP MET TYR HIS LEU PRO LEU PHE ILE VAL SEQRES 30 A 480 GLN ASN GLY PHE GLY ALA ILE ASP GLN VAL GLU ALA ASP SEQRES 31 A 480 GLY MET VAL HIS ASP ASP TYR ARG ILE ASP TYR LEU GLY SEQRES 32 A 480 ALA HIS ILE LYS GLU MET ILE LYS ALA VAL ASP GLU ASP SEQRES 33 A 480 GLY VAL GLU LEU MET GLY TYR THR PRO TRP GLY CYS ILE SEQRES 34 A 480 ASP LEU VAL SER ALA GLY THR GLY GLU MET ARG LYS ARG SEQRES 35 A 480 TYR GLY PHE ILE TYR VAL ASP LYS ASP ASP GLU GLY LYS SEQRES 36 A 480 GLY THR LEU LYS ARG SER PRO LYS LEU SER PHE ASN TRP SEQRES 37 A 480 TYR LYS GLU VAL ILE ALA SER ASN GLY ASP ASP ILE HET P53 A 501 24 HET GOL A 502 6 HET GOL A 503 6 HETNAM P53 2-(HYDROXYMETHYL)PHENYL 6-O-PHOSPHONO-BETA-D- HETNAM 2 P53 GLUCOPYRANOSIDE HETNAM GOL GLYCEROL HETSYN P53 SALICIN-6-PHOSPHATE; 2-(HYDROXYMETHYL)PHENYL 6-O- HETSYN 2 P53 PHOSPHONO-BETA-D-GLUCOSIDE; 2-(HYDROXYMETHYL)PHENYL 6- HETSYN 3 P53 O-PHOSPHONO-D-GLUCOSIDE; 2-(HYDROXYMETHYL)PHENYL 6-O- HETSYN 4 P53 PHOSPHONO-GLUCOSIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 P53 C13 H19 O10 P FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *34(H2 O) HELIX 1 1 ALA A 15 GLU A 20 1 6 HELIX 2 2 GLN A 24 LYS A 28 5 5 HELIX 3 3 VAL A 32 MET A 36 5 5 HELIX 4 4 ASP A 64 GLY A 80 1 17 HELIX 5 5 ALA A 89 PHE A 94 1 6 HELIX 6 6 ASN A 103 TYR A 120 1 18 HELIX 7 7 PRO A 134 GLY A 142 1 9 HELIX 8 8 GLY A 143 ASN A 146 5 4 HELIX 9 9 ARG A 147 TYR A 164 1 18 HELIX 10 10 GLU A 176 ASN A 182 5 7 HELIX 11 11 ASP A 186 GLY A 194 1 9 HELIX 12 12 ASP A 202 ASN A 229 1 28 HELIX 13 13 ASN A 249 GLY A 273 1 25 HELIX 14 14 PRO A 276 LYS A 286 1 11 HELIX 15 15 THR A 293 GLY A 303 1 11 HELIX 16 16 ASP A 352 HIS A 368 1 17 HELIX 17 17 ASP A 392 GLU A 412 1 21 HELIX 18 18 LEU A 461 SER A 472 1 12 SHEET 1 A 9 LEU A 9 ALA A 13 0 SHEET 2 A 9 CYS A 83 SER A 87 1 O ARG A 85 N GLY A 12 SHEET 3 A 9 GLU A 123 SER A 129 1 O VAL A 125 N PHE A 84 SHEET 4 A 9 TYR A 170 PHE A 174 1 O MET A 172 N LEU A 128 SHEET 5 A 9 ASN A 233 ALA A 239 1 O ASN A 233 N TRP A 171 SHEET 6 A 9 ILE A 308 SER A 311 1 O GLY A 309 N CYS A 236 SHEET 7 A 9 LEU A 371 ASN A 376 1 O PHE A 372 N ILE A 308 SHEET 8 A 9 LEU A 417 PRO A 422 1 O MET A 418 N LEU A 371 SHEET 9 A 9 LEU A 9 ALA A 13 1 N ALA A 13 O PRO A 422 SHEET 1 B 3 ILE A 243 PRO A 245 0 SHEET 2 B 3 PHE A 316 ILE A 318 1 O PHE A 316 N TYR A 244 SHEET 3 B 3 LEU A 336 VAL A 337 -1 O VAL A 337 N VAL A 317 SHEET 1 C 2 ILE A 443 VAL A 445 0 SHEET 2 C 2 ARG A 457 PRO A 459 -1 O SER A 458 N TYR A 444 CRYST1 82.278 82.278 221.211 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012154 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004521 0.00000