HEADER OXIDOREDUCTASE 15-MAY-12 4F7D TITLE CRYSTAL STRUCTURE OF FERREDOXIN-NADP REDUCTASE FROM BURKHOLDERIA TITLE 2 THAILANDENSIS E264 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN--NADP REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.18.1.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 STRAIN: E264 / ATCC 700388 / DSM 13276 / CIP 106301; SOURCE 5 GENE: BTH_I0211; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, NIH, NIAID, SBRI, UW, EMERALD BIOSTRUCTURES, FERREDOXIN-NADP KEYWDS 2 REDUCTASE, STRUCTURAL GENOMICS, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 3 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 4 INFECTIOUS DISEASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 28-FEB-24 4F7D 1 REMARK REVDAT 2 30-OCT-13 4F7D 1 JRNL REVDAT 1 30-MAY-12 4F7D 0 JRNL AUTH L.BAUGH,L.A.GALLAGHER,R.PATRAPUVICH,M.C.CLIFTON, JRNL AUTH 2 A.S.GARDBERG,T.E.EDWARDS,B.ARMOUR,D.W.BEGLEY,S.H.DIETERICH, JRNL AUTH 3 D.M.DRANOW,J.ABENDROTH,J.W.FAIRMAN,D.FOX,B.L.STAKER,I.PHAN, JRNL AUTH 4 A.GILLESPIE,R.CHOI,S.NAKAZAWA-HEWITT,M.T.NGUYEN,A.NAPULI, JRNL AUTH 5 L.BARRETT,G.W.BUCHKO,R.STACY,P.J.MYLER,L.J.STEWART,C.MANOIL, JRNL AUTH 6 W.C.VAN VOORHIS JRNL TITL COMBINING FUNCTIONAL AND STRUCTURAL GENOMICS TO SAMPLE THE JRNL TITL 2 ESSENTIAL BURKHOLDERIA STRUCTOME. JRNL REF PLOS ONE V. 8 53851 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23382856 JRNL DOI 10.1371/JOURNAL.PONE.0053851 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 102.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 26143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1329 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1673 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3762 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.83000 REMARK 3 B22 (A**2) : 1.63000 REMARK 3 B33 (A**2) : 0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.318 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.239 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.702 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3865 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5276 ; 1.315 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 493 ; 5.544 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;30.783 ;23.766 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 598 ;14.206 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.340 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 619 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2913 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3755 19.2803 3.3565 REMARK 3 T TENSOR REMARK 3 T11: 0.3126 T22: 0.1290 REMARK 3 T33: 0.2869 T12: 0.0302 REMARK 3 T13: -0.0447 T23: 0.0765 REMARK 3 L TENSOR REMARK 3 L11: 60.6085 L22: 19.4863 REMARK 3 L33: 36.4460 L12: 16.3609 REMARK 3 L13: 31.4772 L23: -5.3313 REMARK 3 S TENSOR REMARK 3 S11: -0.5791 S12: 0.7169 S13: 3.0960 REMARK 3 S21: -0.6229 S22: -0.2209 S23: 1.0528 REMARK 3 S31: -0.0518 S32: -0.1117 S33: 0.7999 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9315 8.8079 10.3149 REMARK 3 T TENSOR REMARK 3 T11: 0.0910 T22: 0.0765 REMARK 3 T33: 0.0503 T12: 0.0266 REMARK 3 T13: 0.0205 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.6358 L22: 2.3225 REMARK 3 L33: 1.0547 L12: 0.0158 REMARK 3 L13: 0.5972 L23: -0.2012 REMARK 3 S TENSOR REMARK 3 S11: 0.0315 S12: 0.2070 S13: 0.1145 REMARK 3 S21: -0.3159 S22: -0.0776 S23: -0.1040 REMARK 3 S31: -0.0502 S32: 0.0516 S33: 0.0460 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7614 5.5547 11.4692 REMARK 3 T TENSOR REMARK 3 T11: 0.0637 T22: 0.0544 REMARK 3 T33: 0.0984 T12: -0.0098 REMARK 3 T13: -0.0279 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 2.0600 L22: 2.8528 REMARK 3 L33: 2.3228 L12: -1.5612 REMARK 3 L13: 0.2152 L23: -0.7902 REMARK 3 S TENSOR REMARK 3 S11: 0.0550 S12: 0.0867 S13: -0.1515 REMARK 3 S21: -0.2030 S22: 0.0074 S23: 0.1069 REMARK 3 S31: 0.0710 S32: -0.0835 S33: -0.0623 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5655 2.2309 19.6477 REMARK 3 T TENSOR REMARK 3 T11: 0.0157 T22: 0.0608 REMARK 3 T33: 0.1005 T12: -0.0065 REMARK 3 T13: -0.0216 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.7519 L22: 1.4990 REMARK 3 L33: 1.3863 L12: -0.1748 REMARK 3 L13: 0.0014 L23: 0.0063 REMARK 3 S TENSOR REMARK 3 S11: 0.0882 S12: -0.0935 S13: -0.1593 REMARK 3 S21: -0.0191 S22: -0.0247 S23: 0.2872 REMARK 3 S31: 0.0192 S32: -0.2355 S33: -0.0635 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 231 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4303 -9.8041 19.2671 REMARK 3 T TENSOR REMARK 3 T11: 0.2143 T22: 0.3140 REMARK 3 T33: 0.4439 T12: -0.2189 REMARK 3 T13: -0.0732 T23: 0.0637 REMARK 3 L TENSOR REMARK 3 L11: 5.6791 L22: 8.5484 REMARK 3 L33: 6.9737 L12: -1.6945 REMARK 3 L13: 1.6722 L23: -3.2846 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: -0.3041 S13: -0.6912 REMARK 3 S21: 0.0641 S22: 0.2775 S23: 0.7542 REMARK 3 S31: 0.8325 S32: -0.8493 S33: -0.2803 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 232 A 267 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9173 0.3919 10.2023 REMARK 3 T TENSOR REMARK 3 T11: 0.0423 T22: 0.3211 REMARK 3 T33: 0.3070 T12: -0.0337 REMARK 3 T13: -0.1065 T23: 0.0491 REMARK 3 L TENSOR REMARK 3 L11: 5.4393 L22: 3.3932 REMARK 3 L33: 4.8089 L12: -0.3096 REMARK 3 L13: -0.2893 L23: -0.0711 REMARK 3 S TENSOR REMARK 3 S11: 0.0061 S12: 0.4708 S13: -0.1324 REMARK 3 S21: -0.1166 S22: 0.2675 S23: 0.5405 REMARK 3 S31: 0.1104 S32: -0.8520 S33: -0.2736 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 18 B 66 REMARK 3 ORIGIN FOR THE GROUP (A): 48.3358 -11.2252 22.2516 REMARK 3 T TENSOR REMARK 3 T11: 0.0842 T22: 0.0651 REMARK 3 T33: 0.0823 T12: -0.0126 REMARK 3 T13: 0.0085 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.5508 L22: 1.7566 REMARK 3 L33: 1.1726 L12: -0.8099 REMARK 3 L13: 0.4090 L23: -0.3350 REMARK 3 S TENSOR REMARK 3 S11: 0.0730 S12: 0.1352 S13: -0.0672 REMARK 3 S21: -0.1050 S22: -0.0598 S23: -0.1545 REMARK 3 S31: 0.1246 S32: 0.1398 S33: -0.0132 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 67 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): 48.6533 -8.4457 22.9652 REMARK 3 T TENSOR REMARK 3 T11: 0.0395 T22: 0.0628 REMARK 3 T33: 0.0938 T12: -0.0184 REMARK 3 T13: -0.0139 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 1.1209 L22: 1.9920 REMARK 3 L33: 3.4169 L12: -0.6042 REMARK 3 L13: 0.1182 L23: -0.8090 REMARK 3 S TENSOR REMARK 3 S11: -0.0332 S12: 0.2004 S13: 0.1262 REMARK 3 S21: -0.0824 S22: -0.0253 S23: -0.1404 REMARK 3 S31: -0.0991 S32: 0.2186 S33: 0.0585 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 115 B 159 REMARK 3 ORIGIN FOR THE GROUP (A): 44.0853 -3.0841 42.2486 REMARK 3 T TENSOR REMARK 3 T11: 0.1857 T22: 0.1315 REMARK 3 T33: 0.0817 T12: 0.0514 REMARK 3 T13: -0.0576 T23: -0.0454 REMARK 3 L TENSOR REMARK 3 L11: 3.6116 L22: 0.9514 REMARK 3 L33: 1.2997 L12: -0.6554 REMARK 3 L13: 0.5418 L23: 0.9020 REMARK 3 S TENSOR REMARK 3 S11: -0.3367 S12: -0.5462 S13: 0.0904 REMARK 3 S21: 0.1803 S22: 0.1392 S23: 0.1019 REMARK 3 S31: 0.0630 S32: -0.0688 S33: 0.1976 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 160 B 213 REMARK 3 ORIGIN FOR THE GROUP (A): 38.8844 3.1017 36.3691 REMARK 3 T TENSOR REMARK 3 T11: 0.1381 T22: 0.1096 REMARK 3 T33: 0.1034 T12: 0.0642 REMARK 3 T13: -0.0324 T23: -0.0613 REMARK 3 L TENSOR REMARK 3 L11: 1.7336 L22: 2.4172 REMARK 3 L33: 2.6065 L12: -0.5209 REMARK 3 L13: 0.7337 L23: -0.3079 REMARK 3 S TENSOR REMARK 3 S11: -0.1931 S12: -0.1656 S13: 0.2189 REMARK 3 S21: 0.1803 S22: 0.1943 S23: -0.0047 REMARK 3 S31: -0.2684 S32: -0.2690 S33: -0.0012 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 214 B 264 REMARK 3 ORIGIN FOR THE GROUP (A): 52.9004 1.7450 48.8580 REMARK 3 T TENSOR REMARK 3 T11: 0.2054 T22: 0.2912 REMARK 3 T33: 0.1436 T12: 0.0751 REMARK 3 T13: -0.1464 T23: -0.1150 REMARK 3 L TENSOR REMARK 3 L11: 4.5974 L22: 4.5156 REMARK 3 L33: 4.6991 L12: -0.8104 REMARK 3 L13: -1.2476 L23: 0.8645 REMARK 3 S TENSOR REMARK 3 S11: -0.3268 S12: -0.9394 S13: 0.3872 REMARK 3 S21: 0.4538 S22: 0.3008 S23: -0.0788 REMARK 3 S31: -0.1263 S32: 0.4391 S33: 0.0260 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 265 B 271 REMARK 3 ORIGIN FOR THE GROUP (A): 57.1759 -2.8748 32.6198 REMARK 3 T TENSOR REMARK 3 T11: 0.8309 T22: 0.4366 REMARK 3 T33: 0.3777 T12: 0.1743 REMARK 3 T13: 0.1347 T23: 0.0447 REMARK 3 L TENSOR REMARK 3 L11: 7.5799 L22: 8.6120 REMARK 3 L33: 29.6494 L12: 0.3249 REMARK 3 L13: 2.2480 L23: -4.5854 REMARK 3 S TENSOR REMARK 3 S11: -1.0756 S12: 0.1877 S13: -0.0476 REMARK 3 S21: -2.3561 S22: -0.9543 S23: -0.6910 REMARK 3 S31: 0.5759 S32: 2.6117 S33: 2.0300 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4F7D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072547. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26192 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 102.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EBS INTERNAL TRACKING NUMBER HEPES (PH REMARK 280 7.0), 500 MM NACL, 2 MM DTT, 0.025% SODIUM AZIDE, 5% GLYCEROL, REMARK 280 0.4 UL X 0.4 UL DROP WITH 20% PEG 3350, 200 MM NACL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.01000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.07000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.07000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.01000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 LEU A 4 REMARK 465 TRP A 5 REMARK 465 GLY A 6 REMARK 465 PRO A 7 REMARK 465 LEU A 8 REMARK 465 TYR A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 VAL A 12 REMARK 465 SER A 13 REMARK 465 GLU A 14 REMARK 465 SER A 15 REMARK 465 MET A 16 REMARK 465 ARG A 197 REMARK 465 GLU A 198 REMARK 465 GLU A 199 REMARK 465 PHE A 200 REMARK 465 GLU A 201 REMARK 465 ASN A 202 REMARK 465 GLU A 203 REMARK 465 GLY A 204 REMARK 465 ASP A 271 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 PRO B 3 REMARK 465 LEU B 4 REMARK 465 TRP B 5 REMARK 465 GLY B 6 REMARK 465 PRO B 7 REMARK 465 LEU B 8 REMARK 465 TYR B 9 REMARK 465 ALA B 10 REMARK 465 PRO B 11 REMARK 465 VAL B 12 REMARK 465 SER B 13 REMARK 465 GLU B 14 REMARK 465 SER B 15 REMARK 465 THR B 196 REMARK 465 ARG B 197 REMARK 465 GLU B 198 REMARK 465 GLU B 199 REMARK 465 PHE B 200 REMARK 465 GLU B 201 REMARK 465 ASN B 202 REMARK 465 GLU B 203 REMARK 465 GLY B 204 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 17 OG REMARK 470 LYS A 18 CG CD CE NZ REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 GLN A 87 CG CD OE1 NE2 REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 ARG A 160 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 195 CG1 CG2 REMARK 470 THR A 196 OG1 CG2 REMARK 470 ARG A 205 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 227 CG CD OE1 OE2 REMARK 470 GLN A 228 CG CD OE1 NE2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 LYS A 256 CG CD CE NZ REMARK 470 ARG A 267 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 18 CG CD CE NZ REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 GLN B 87 CG CD OE1 NE2 REMARK 470 LYS B 109 CG CD CE NZ REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 ARG B 160 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 195 CG1 CG2 REMARK 470 ARG B 205 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 228 CG CD OE1 NE2 REMARK 470 LYS B 241 CG CD CE NZ REMARK 470 LYS B 249 CG CD CE NZ REMARK 470 LYS B 256 CG CD CE NZ REMARK 470 ASP B 271 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 29 CG HIS A 29 CD2 0.057 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 86 -70.69 -118.90 REMARK 500 ARG A 160 -30.77 -132.91 REMARK 500 THR A 194 -150.50 -125.57 REMARK 500 VAL B 86 -69.44 -121.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUTHA.00101.A RELATED DB: TARGETTRACK DBREF 4F7D A 1 271 UNP Q2T230 Q2T230_BURTA 1 271 DBREF 4F7D B 1 271 UNP Q2T230 Q2T230_BURTA 1 271 SEQRES 1 A 271 MET GLY PRO LEU TRP GLY PRO LEU TYR ALA PRO VAL SER SEQRES 2 A 271 GLU SER MET SER LYS PHE ASP THR ALA THR VAL LEU SER SEQRES 3 A 271 VAL HIS HIS TRP THR ASP THR LEU PHE SER PHE THR CYS SEQRES 4 A 271 THR ARG ASP GLN ALA LEU ARG PHE ASN ASN GLY GLU PHE SEQRES 5 A 271 THR MET VAL GLY LEU GLU VAL ASP GLY LYS PRO LEU THR SEQRES 6 A 271 ARG ALA TYR SER ILE VAL SER PRO ASN TYR GLU GLU HIS SEQRES 7 A 271 LEU GLU PHE PHE SER ILE LYS VAL GLN ASN GLY PRO LEU SEQRES 8 A 271 THR SER ARG LEU GLN HIS LEU LYS VAL GLY ASP PRO VAL SEQRES 9 A 271 LEU ILE GLY LYS LYS PRO THR GLY THR LEU VAL ALA ASP SEQRES 10 A 271 ASN LEU LEU PRO GLY LYS THR LEU TRP MET LEU SER THR SEQRES 11 A 271 GLY THR GLY LEU ALA PRO PHE MET SER ILE ILE ARG ASP SEQRES 12 A 271 PRO ASP ILE TYR GLU ARG PHE ASP LYS VAL VAL LEU THR SEQRES 13 A 271 HIS THR CYS ARG LEU LYS GLY GLU LEU ALA TYR MET ASP SEQRES 14 A 271 TYR ILE LYS HIS ASP LEU PRO GLY HIS GLU TYR LEU GLY SEQRES 15 A 271 ASP VAL ILE ARG GLU LYS LEU VAL TYR TYR PRO THR VAL SEQRES 16 A 271 THR ARG GLU GLU PHE GLU ASN GLU GLY ARG ILE THR ASP SEQRES 17 A 271 LEU ILE ALA SER GLY LYS LEU PHE THR ASP LEU ASP MET SEQRES 18 A 271 PRO PRO PHE SER PRO GLU GLN ASP ARG VAL MET LEU CYS SEQRES 19 A 271 GLY SER THR ALA MET LEU LYS ASP THR THR GLU LEU LEU SEQRES 20 A 271 LYS LYS ALA GLY LEU VAL GLU GLY LYS ASN SER ALA PRO SEQRES 21 A 271 GLY HIS TYR VAL ILE GLU ARG ALA PHE VAL ASP SEQRES 1 B 271 MET GLY PRO LEU TRP GLY PRO LEU TYR ALA PRO VAL SER SEQRES 2 B 271 GLU SER MET SER LYS PHE ASP THR ALA THR VAL LEU SER SEQRES 3 B 271 VAL HIS HIS TRP THR ASP THR LEU PHE SER PHE THR CYS SEQRES 4 B 271 THR ARG ASP GLN ALA LEU ARG PHE ASN ASN GLY GLU PHE SEQRES 5 B 271 THR MET VAL GLY LEU GLU VAL ASP GLY LYS PRO LEU THR SEQRES 6 B 271 ARG ALA TYR SER ILE VAL SER PRO ASN TYR GLU GLU HIS SEQRES 7 B 271 LEU GLU PHE PHE SER ILE LYS VAL GLN ASN GLY PRO LEU SEQRES 8 B 271 THR SER ARG LEU GLN HIS LEU LYS VAL GLY ASP PRO VAL SEQRES 9 B 271 LEU ILE GLY LYS LYS PRO THR GLY THR LEU VAL ALA ASP SEQRES 10 B 271 ASN LEU LEU PRO GLY LYS THR LEU TRP MET LEU SER THR SEQRES 11 B 271 GLY THR GLY LEU ALA PRO PHE MET SER ILE ILE ARG ASP SEQRES 12 B 271 PRO ASP ILE TYR GLU ARG PHE ASP LYS VAL VAL LEU THR SEQRES 13 B 271 HIS THR CYS ARG LEU LYS GLY GLU LEU ALA TYR MET ASP SEQRES 14 B 271 TYR ILE LYS HIS ASP LEU PRO GLY HIS GLU TYR LEU GLY SEQRES 15 B 271 ASP VAL ILE ARG GLU LYS LEU VAL TYR TYR PRO THR VAL SEQRES 16 B 271 THR ARG GLU GLU PHE GLU ASN GLU GLY ARG ILE THR ASP SEQRES 17 B 271 LEU ILE ALA SER GLY LYS LEU PHE THR ASP LEU ASP MET SEQRES 18 B 271 PRO PRO PHE SER PRO GLU GLN ASP ARG VAL MET LEU CYS SEQRES 19 B 271 GLY SER THR ALA MET LEU LYS ASP THR THR GLU LEU LEU SEQRES 20 B 271 LYS LYS ALA GLY LEU VAL GLU GLY LYS ASN SER ALA PRO SEQRES 21 B 271 GLY HIS TYR VAL ILE GLU ARG ALA PHE VAL ASP FORMUL 3 HOH *139(H2 O) HELIX 1 1 GLY A 89 GLN A 96 1 8 HELIX 2 2 VAL A 115 LEU A 119 5 5 HELIX 3 3 GLY A 133 ILE A 141 1 9 HELIX 4 4 ASP A 143 PHE A 150 1 8 HELIX 5 5 LEU A 161 ASP A 174 1 14 HELIX 6 6 TYR A 180 LYS A 188 1 9 HELIX 7 7 ILE A 206 SER A 212 1 7 HELIX 8 8 LYS A 214 LEU A 219 1 6 HELIX 9 9 SER A 236 LYS A 249 1 14 HELIX 10 10 GLY B 89 GLN B 96 1 8 HELIX 11 11 VAL B 115 LEU B 119 5 5 HELIX 12 12 GLY B 133 ILE B 141 1 9 HELIX 13 13 ASP B 143 PHE B 150 1 8 HELIX 14 14 LEU B 161 HIS B 173 1 13 HELIX 15 15 TYR B 180 LYS B 188 1 9 HELIX 16 16 ILE B 206 SER B 212 1 7 HELIX 17 17 GLY B 213 LEU B 219 1 7 HELIX 18 18 SER B 236 ALA B 250 1 15 SHEET 1 A 8 LYS A 62 SER A 69 0 SHEET 2 A 8 PHE A 52 VAL A 59 -1 N LEU A 57 O LEU A 64 SHEET 3 A 8 PRO A 103 GLY A 107 -1 O LEU A 105 N GLY A 56 SHEET 4 A 8 PHE A 19 HIS A 29 -1 N ASP A 20 O ILE A 106 SHEET 5 A 8 PHE B 19 HIS B 29 -1 O HIS B 29 N VAL A 27 SHEET 6 A 8 PRO B 103 GLY B 107 -1 O VAL B 104 N ALA B 22 SHEET 7 A 8 PHE B 52 VAL B 59 -1 N MET B 54 O GLY B 107 SHEET 8 A 8 LYS B 62 SER B 69 -1 O ARG B 66 N VAL B 55 SHEET 1 B 6 LEU A 79 ILE A 84 0 SHEET 2 B 6 LEU A 34 CYS A 39 -1 N PHE A 35 O SER A 83 SHEET 3 B 6 PHE A 19 HIS A 29 -1 N LEU A 25 O THR A 38 SHEET 4 B 6 PHE B 19 HIS B 29 -1 O HIS B 29 N VAL A 27 SHEET 5 B 6 LEU B 34 THR B 40 -1 O SER B 36 N HIS B 28 SHEET 6 B 6 HIS B 78 ILE B 84 -1 O SER B 83 N PHE B 35 SHEET 1 C 5 LEU A 189 PRO A 193 0 SHEET 2 C 5 LYS A 152 HIS A 157 1 N LEU A 155 O VAL A 190 SHEET 3 C 5 THR A 124 SER A 129 1 N MET A 127 O VAL A 154 SHEET 4 C 5 ASP A 229 GLY A 235 1 O ARG A 230 N THR A 124 SHEET 5 C 5 TYR A 263 ARG A 267 1 O VAL A 264 N LEU A 233 SHEET 1 D 5 LEU B 189 PRO B 193 0 SHEET 2 D 5 LYS B 152 HIS B 157 1 N LEU B 155 O TYR B 192 SHEET 3 D 5 THR B 124 SER B 129 1 N MET B 127 O VAL B 154 SHEET 4 D 5 ASP B 229 GLY B 235 1 O ARG B 230 N TRP B 126 SHEET 5 D 5 TYR B 263 ARG B 267 1 O VAL B 264 N LEU B 233 CRYST1 70.020 85.570 102.140 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014282 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011686 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009790 0.00000