HEADER IMMUNE SYSTEM 16-MAY-12 4F7M TITLE CRYSTAL STRUCTURE OF HLA-A*2402 COMPLEXED WITH A NEWLY IDENTIFIED TITLE 2 PEPTIDE FROM 2009 H1N1 PA (649-658) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-24 ALPHA CHAIN; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 25-298; COMPND 5 SYNONYM: AW-24, HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-9 ALPHA COMPND 6 CHAIN, MHC CLASS I ANTIGEN A*24; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 10 CHAIN: B, E; COMPND 11 FRAGMENT: UNP RESIDUES 21-119; COMPND 12 SYNONYM: BETA-2-MICROGLOBULIN FORM PI 5.3; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: PA POLYMERASE SUBUNIT; COMPND 16 CHAIN: C, F; COMPND 17 FRAGMENT: UNP RESIDUES 649-658; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-A, HLAA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS H3N2; SOURCE 18 ORGANISM_TAXID: 41857; SOURCE 19 OTHER_DETAILS: IN VITRO SYNTHESIZED PEPTIDE FROM INFLUENZA A VIRUS SOURCE 20 POLYMERASE KEYWDS HLA-A*2402, INFLUENZA A VIRUS, 2009 H1N1, HLA-A3 SUPERTYPE, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.LIU,S.ZHANG,S.TAN,Y.YI,B.WU,F.ZHU,H.WANG,J.QI,F.G.GEORGE REVDAT 3 13-SEP-23 4F7M 1 SEQADV REVDAT 2 05-DEC-12 4F7M 1 JRNL REVDAT 1 10-OCT-12 4F7M 0 JRNL AUTH J.LIU,S.ZHANG,S.TAN,Y.YI,B.WU,B.CAO,F.ZHU,C.WANG,H.WANG, JRNL AUTH 2 J.QI,G.F.GAO JRNL TITL CROSS-ALLELE CYTOTOXIC T LYMPHOCYTE RESPONSES AGAINST 2009 JRNL TITL 2 PANDEMIC H1N1 INFLUENZA A VIRUS AMONG HLA-A24 AND HLA-A3 JRNL TITL 3 SUPERTYPE-POSITIVE INDIVIDUALS. JRNL REF J.VIROL. V. 86 13281 2012 JRNL REFN ISSN 0022-538X JRNL PMID 23015716 JRNL DOI 10.1128/JVI.01841-12 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.150 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 31150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1581 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.6764 - 5.3416 0.99 2885 180 0.2411 0.2542 REMARK 3 2 5.3416 - 4.2413 0.99 2852 142 0.1868 0.2327 REMARK 3 3 4.2413 - 3.7055 0.98 2807 149 0.2026 0.2480 REMARK 3 4 3.7055 - 3.3669 0.98 2832 143 0.2196 0.2769 REMARK 3 5 3.3669 - 3.1257 0.97 2770 145 0.2384 0.2980 REMARK 3 6 3.1257 - 2.9415 0.95 2720 145 0.2590 0.2953 REMARK 3 7 2.9415 - 2.7942 0.93 2653 132 0.2602 0.3158 REMARK 3 8 2.7942 - 2.6726 0.92 2624 137 0.2667 0.3469 REMARK 3 9 2.6726 - 2.5697 0.90 2578 122 0.2700 0.3385 REMARK 3 10 2.5697 - 2.4810 0.89 2544 140 0.2728 0.3680 REMARK 3 11 2.4810 - 2.4035 0.83 2304 146 0.2740 0.3306 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 24.26 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.57930 REMARK 3 B22 (A**2) : -1.84670 REMARK 3 B33 (A**2) : -3.73260 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.64860 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6448 REMARK 3 ANGLE : 0.708 8732 REMARK 3 CHIRALITY : 0.050 885 REMARK 3 PLANARITY : 0.003 1154 REMARK 3 DIHEDRAL : 18.366 2346 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 4.3064 -6.7243 -21.5987 REMARK 3 T TENSOR REMARK 3 T11: 0.0505 T22: 0.0383 REMARK 3 T33: 0.0428 T12: 0.0024 REMARK 3 T13: 0.0058 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.0754 L22: 0.0724 REMARK 3 L33: 0.0329 L12: 0.0343 REMARK 3 L13: -0.0149 L23: 0.0084 REMARK 3 S TENSOR REMARK 3 S11: -0.0042 S12: 0.0244 S13: 0.0293 REMARK 3 S21: -0.0080 S22: 0.0052 S23: 0.0133 REMARK 3 S31: -0.0027 S32: 0.0009 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4F7M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072556. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33004 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : 0.18000 REMARK 200 FOR THE DATA SET : 9.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48300 REMARK 200 R SYM FOR SHELL (I) : 0.48300 REMARK 200 FOR SHELL : 2.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3I6L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM NITRATE AND 20% (W/V) REMARK 280 POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.54600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET B 0 REMARK 465 MET D 0 REMARK 465 MET E 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 158 O HOH B 167 1.80 REMARK 500 O THR A 134 O HOH A 421 1.81 REMARK 500 O HOH D 361 O HOH D 407 1.81 REMARK 500 O GLU B 77 O HOH B 183 1.82 REMARK 500 SD MET D 189 O HOH D 372 1.82 REMARK 500 OG SER B 88 O HOH B 166 1.82 REMARK 500 O HOH D 343 O HOH D 371 1.84 REMARK 500 O HOH A 362 O HOH A 373 1.84 REMARK 500 O HOH E 136 O HOH E 141 1.84 REMARK 500 OH TYR D 257 O HOH D 390 1.84 REMARK 500 O HOH D 367 O HOH D 396 1.84 REMARK 500 O HOH A 317 O HOH A 427 1.87 REMARK 500 OH TYR A 257 O HOH A 419 1.87 REMARK 500 O ARG E 12 O HOH E 160 1.87 REMARK 500 OG1 THR B 68 O HOH B 180 1.89 REMARK 500 CB THR B 68 O HOH B 180 1.90 REMARK 500 O HOH B 112 O HOH B 143 1.90 REMARK 500 O HOH A 406 O HOH A 415 1.90 REMARK 500 O HOH D 349 O HOH D 364 1.91 REMARK 500 NE1 TRP A 244 O HOH A 397 1.91 REMARK 500 NH1 ARG D 75 O HOH D 350 1.92 REMARK 500 O LEU A 110 O HOH A 423 1.93 REMARK 500 C LEU A 110 O HOH A 423 1.93 REMARK 500 N ARG E 3 O HOH E 145 1.93 REMARK 500 O GLU D 222 O HOH D 374 1.94 REMARK 500 O HOH A 375 O HOH A 376 1.94 REMARK 500 OH TYR D 257 O HOH D 383 1.94 REMARK 500 N GLU A 229 O HOH A 394 1.94 REMARK 500 O HOH B 105 O HOH B 114 1.95 REMARK 500 C THR A 228 O HOH A 394 1.95 REMARK 500 O HIS E 31 O HOH E 145 1.95 REMARK 500 NH2 ARG D 75 O HOH D 350 1.96 REMARK 500 O HOH B 184 O HOH B 185 1.96 REMARK 500 O HOH A 386 O HOH A 407 1.96 REMARK 500 O HOH D 376 O HOH D 380 1.96 REMARK 500 O ARG D 21 O HOH D 312 1.96 REMARK 500 CB GLU D 58 O HOH D 380 1.97 REMARK 500 O HOH D 383 O HOH D 390 1.98 REMARK 500 O HOH A 328 O HOH A 340 1.99 REMARK 500 O HOH D 381 O HOH D 391 1.99 REMARK 500 O HOH A 388 O HOH B 154 2.00 REMARK 500 OD1 ASP D 227 O HOH D 370 2.00 REMARK 500 N ASN B 42 O HOH B 183 2.01 REMARK 500 O ASP A 227 O HOH A 394 2.01 REMARK 500 O HOH B 170 O HOH B 174 2.01 REMARK 500 O MET B 99 O HOH A 397 2.02 REMARK 500 O HOH D 316 O HOH D 360 2.03 REMARK 500 O HOH D 325 O HOH E 160 2.03 REMARK 500 O HOH D 326 O HOH D 368 2.04 REMARK 500 N ILE A 194 O HOH A 353 2.05 REMARK 500 REMARK 500 THIS ENTRY HAS 83 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 430 O HOH B 186 2545 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -132.99 53.75 REMARK 500 LEU A 110 -31.64 -142.65 REMARK 500 HIS A 114 91.80 -171.56 REMARK 500 PRO A 210 -176.78 -69.89 REMARK 500 ASP A 220 -5.58 59.84 REMARK 500 GLN A 226 28.07 -74.86 REMARK 500 ASP A 227 -7.01 -143.70 REMARK 500 PRO B 32 -175.39 -69.04 REMARK 500 GLU B 47 -74.79 -74.74 REMARK 500 TRP B 60 -11.53 85.94 REMARK 500 GLU C 8 75.88 89.05 REMARK 500 ASP D 29 -130.25 52.14 REMARK 500 LEU D 110 -58.53 -129.38 REMARK 500 HIS D 114 90.12 -165.44 REMARK 500 TYR D 123 -64.76 -109.44 REMARK 500 PRO D 210 -177.15 -68.47 REMARK 500 ASP D 220 -2.51 64.80 REMARK 500 GLN D 224 55.64 -99.98 REMARK 500 GLN D 226 29.23 -74.22 REMARK 500 ASP D 227 -1.17 -145.58 REMARK 500 GLU E 47 -81.85 -66.68 REMARK 500 SER E 57 -168.22 -100.83 REMARK 500 TRP E 60 -13.48 78.93 REMARK 500 GLU F 8 66.78 84.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN C OF PA POLYMERASE REMARK 800 SUBUNIT REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN F OF PA POLYMERASE REMARK 800 SUBUNIT REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I6L RELATED DB: PDB REMARK 900 USED AS MODEL FOR MOLECULAR REPLACEMENT REMARK 900 RELATED ID: 4F7P RELATED DB: PDB REMARK 900 RELATED ID: 4F7T RELATED DB: PDB REMARK 900 RELATED ID: 4F7Q RELATED DB: PDB DBREF 4F7M A 1 274 UNP P05534 1A24_HUMAN 25 298 DBREF 4F7M B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 4F7M C 1 10 UNP Q9YXL3 Q9YXL3_9INFA 649 658 DBREF 4F7M D 1 274 UNP P05534 1A24_HUMAN 25 298 DBREF 4F7M E 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 4F7M F 1 10 UNP Q9YXL3 Q9YXL3_9INFA 649 658 SEQADV 4F7M MET A 0 UNP P05534 INITIATING METHIONINE SEQADV 4F7M MET B 0 UNP P61769 INITIATING METHIONINE SEQADV 4F7M MET D 0 UNP P05534 INITIATING METHIONINE SEQADV 4F7M MET E 0 UNP P61769 INITIATING METHIONINE SEQRES 1 A 275 MET GLY SER HIS SER MET ARG TYR PHE SER THR SER VAL SEQRES 2 A 275 SER ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL SEQRES 3 A 275 GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER SEQRES 4 A 275 ASP ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP SEQRES 5 A 275 ILE GLU GLN GLU GLY PRO GLU TYR TRP ASP GLU GLU THR SEQRES 6 A 275 GLY LYS VAL LYS ALA HIS SER GLN THR ASP ARG GLU ASN SEQRES 7 A 275 LEU ARG ILE ALA LEU ARG TYR TYR ASN GLN SER GLU ALA SEQRES 8 A 275 GLY SER HIS THR LEU GLN MET MET PHE GLY CYS ASP VAL SEQRES 9 A 275 GLY SER ASP GLY ARG PHE LEU ARG GLY TYR HIS GLN TYR SEQRES 10 A 275 ALA TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP SEQRES 11 A 275 LEU ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN ILE SEQRES 12 A 275 THR LYS ARG LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN SEQRES 13 A 275 GLN ARG ALA TYR LEU GLU GLY THR CYS VAL ASP GLY LEU SEQRES 14 A 275 ARG ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG SEQRES 15 A 275 THR ASP PRO PRO LYS THR HIS MET THR HIS HIS PRO ILE SEQRES 16 A 275 SER ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY SEQRES 17 A 275 PHE TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP SEQRES 18 A 275 GLY GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR SEQRES 19 A 275 ARG PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA SEQRES 20 A 275 VAL VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS SEQRES 21 A 275 HIS VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU SEQRES 22 A 275 ARG TRP SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 10 LEU TYR ALA SER PRO GLN LEU GLU GLY PHE SEQRES 1 D 275 MET GLY SER HIS SER MET ARG TYR PHE SER THR SER VAL SEQRES 2 D 275 SER ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL SEQRES 3 D 275 GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER SEQRES 4 D 275 ASP ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP SEQRES 5 D 275 ILE GLU GLN GLU GLY PRO GLU TYR TRP ASP GLU GLU THR SEQRES 6 D 275 GLY LYS VAL LYS ALA HIS SER GLN THR ASP ARG GLU ASN SEQRES 7 D 275 LEU ARG ILE ALA LEU ARG TYR TYR ASN GLN SER GLU ALA SEQRES 8 D 275 GLY SER HIS THR LEU GLN MET MET PHE GLY CYS ASP VAL SEQRES 9 D 275 GLY SER ASP GLY ARG PHE LEU ARG GLY TYR HIS GLN TYR SEQRES 10 D 275 ALA TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP SEQRES 11 D 275 LEU ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN ILE SEQRES 12 D 275 THR LYS ARG LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN SEQRES 13 D 275 GLN ARG ALA TYR LEU GLU GLY THR CYS VAL ASP GLY LEU SEQRES 14 D 275 ARG ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG SEQRES 15 D 275 THR ASP PRO PRO LYS THR HIS MET THR HIS HIS PRO ILE SEQRES 16 D 275 SER ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY SEQRES 17 D 275 PHE TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP SEQRES 18 D 275 GLY GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR SEQRES 19 D 275 ARG PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA SEQRES 20 D 275 VAL VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS SEQRES 21 D 275 HIS VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU SEQRES 22 D 275 ARG TRP SEQRES 1 E 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 E 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 E 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 E 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 E 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 E 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 E 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 E 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 F 10 LEU TYR ALA SER PRO GLN LEU GLU GLY PHE FORMUL 7 HOH *402(H2 O) HELIX 1 1 ALA A 49 GLU A 53 5 5 HELIX 2 2 GLY A 56 ASN A 86 1 31 HELIX 3 3 ASP A 137 ALA A 150 1 14 HELIX 4 4 HIS A 151 GLY A 162 1 12 HELIX 5 5 GLY A 162 GLY A 175 1 14 HELIX 6 6 GLY A 175 GLN A 180 1 6 HELIX 7 7 GLU A 253 GLN A 255 5 3 HELIX 8 8 ALA D 49 GLU D 53 5 5 HELIX 9 9 GLY D 56 ASN D 86 1 31 HELIX 10 10 ALA D 139 ALA D 150 1 12 HELIX 11 11 HIS D 151 GLY D 162 1 12 HELIX 12 12 GLY D 162 GLY D 175 1 14 HELIX 13 13 GLY D 175 GLN D 180 1 6 HELIX 14 14 GLU D 253 GLN D 255 5 3 SHEET 1 A 8 GLU A 46 PRO A 47 0 SHEET 2 A 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 A 8 ARG A 21 VAL A 28 -1 N ALA A 24 O PHE A 36 SHEET 4 A 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 A 8 THR A 94 VAL A 103 -1 O LEU A 95 N SER A 11 SHEET 6 A 8 PHE A 109 TYR A 118 -1 O ALA A 117 N GLN A 96 SHEET 7 A 8 LYS A 121 LEU A 126 -1 O ILE A 124 N TYR A 116 SHEET 8 A 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 B 4 LYS A 186 HIS A 192 0 SHEET 2 B 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 B 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 B 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 C 4 LYS A 186 HIS A 192 0 SHEET 2 C 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 C 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 C 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 D 4 GLU A 222 ASP A 223 0 SHEET 2 D 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 D 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 4 D 4 LEU A 270 ARG A 273 -1 O LEU A 272 N CYS A 259 SHEET 1 E 4 LYS B 6 SER B 11 0 SHEET 2 E 4 ASN B 21 PHE B 30 -1 O SER B 28 N LYS B 6 SHEET 3 E 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 E 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 F 4 LYS B 6 SER B 11 0 SHEET 2 F 4 ASN B 21 PHE B 30 -1 O SER B 28 N LYS B 6 SHEET 3 F 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 F 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 G 4 GLU B 44 ARG B 45 0 SHEET 2 G 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 G 4 TYR B 78 ASN B 83 -1 O ARG B 81 N ASP B 38 SHEET 4 G 4 LYS B 91 LYS B 94 -1 O VAL B 93 N CYS B 80 SHEET 1 H 8 GLU D 46 PRO D 47 0 SHEET 2 H 8 THR D 31 ASP D 37 -1 N ARG D 35 O GLU D 46 SHEET 3 H 8 ARG D 21 VAL D 28 -1 N VAL D 28 O THR D 31 SHEET 4 H 8 HIS D 3 VAL D 12 -1 N ARG D 6 O TYR D 27 SHEET 5 H 8 THR D 94 VAL D 103 -1 O LEU D 95 N SER D 11 SHEET 6 H 8 PHE D 109 TYR D 118 -1 O ARG D 111 N ASP D 102 SHEET 7 H 8 LYS D 121 LEU D 126 -1 O ILE D 124 N TYR D 116 SHEET 8 H 8 TRP D 133 ALA D 135 -1 O THR D 134 N ALA D 125 SHEET 1 I 4 LYS D 186 PRO D 193 0 SHEET 2 I 4 GLU D 198 PHE D 208 -1 O LEU D 206 N LYS D 186 SHEET 3 I 4 PHE D 241 PRO D 250 -1 O ALA D 245 N CYS D 203 SHEET 4 I 4 THR D 228 LEU D 230 -1 N GLU D 229 O ALA D 246 SHEET 1 J 4 LYS D 186 PRO D 193 0 SHEET 2 J 4 GLU D 198 PHE D 208 -1 O LEU D 206 N LYS D 186 SHEET 3 J 4 PHE D 241 PRO D 250 -1 O ALA D 245 N CYS D 203 SHEET 4 J 4 ARG D 234 PRO D 235 -1 N ARG D 234 O GLN D 242 SHEET 1 K 4 GLU D 222 ASP D 223 0 SHEET 2 K 4 THR D 214 ARG D 219 -1 N ARG D 219 O GLU D 222 SHEET 3 K 4 TYR D 257 GLN D 262 -1 O HIS D 260 N THR D 216 SHEET 4 K 4 LEU D 270 ARG D 273 -1 O LEU D 272 N CYS D 259 SHEET 1 L 4 LYS E 6 SER E 11 0 SHEET 2 L 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 L 4 PHE E 62 PHE E 70 -1 O THR E 68 N LEU E 23 SHEET 4 L 4 GLU E 50 HIS E 51 -1 N GLU E 50 O TYR E 67 SHEET 1 M 4 LYS E 6 SER E 11 0 SHEET 2 M 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 M 4 PHE E 62 PHE E 70 -1 O THR E 68 N LEU E 23 SHEET 4 M 4 SER E 55 PHE E 56 -1 N SER E 55 O TYR E 63 SHEET 1 N 4 GLU E 44 ARG E 45 0 SHEET 2 N 4 GLU E 36 LYS E 41 -1 N LYS E 41 O GLU E 44 SHEET 3 N 4 TYR E 78 ASN E 83 -1 O ARG E 81 N ASP E 38 SHEET 4 N 4 LYS E 91 LYS E 94 -1 O VAL E 93 N CYS E 80 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.04 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.03 SSBOND 4 CYS D 101 CYS D 164 1555 1555 2.04 SSBOND 5 CYS D 203 CYS D 259 1555 1555 2.03 SSBOND 6 CYS E 25 CYS E 80 1555 1555 2.03 CISPEP 1 TYR A 209 PRO A 210 0 1.88 CISPEP 2 HIS B 31 PRO B 32 0 1.70 CISPEP 3 TYR D 209 PRO D 210 0 3.79 CISPEP 4 HIS E 31 PRO E 32 0 3.69 SITE 1 AC1 28 TYR A 7 TYR A 59 GLU A 63 LYS A 66 SITE 2 AC1 28 VAL A 67 HIS A 70 THR A 73 ASN A 77 SITE 3 AC1 28 ILE A 80 TYR A 84 PHE A 99 TYR A 116 SITE 4 AC1 28 TYR A 123 THR A 143 LYS A 146 TRP A 147 SITE 5 AC1 28 VAL A 152 GLN A 156 TYR A 159 THR A 163 SITE 6 AC1 28 GLY A 167 ARG A 170 TYR A 171 HOH A 340 SITE 7 AC1 28 HOH C 101 HOH C 102 HOH C 103 HOH C 105 SITE 1 AC2 23 TYR D 7 TYR D 59 GLU D 63 LYS D 66 SITE 2 AC2 23 HIS D 70 THR D 73 ASN D 77 ILE D 80 SITE 3 AC2 23 TYR D 84 PHE D 99 TYR D 123 THR D 143 SITE 4 AC2 23 LYS D 146 TRP D 147 VAL D 152 GLN D 156 SITE 5 AC2 23 TYR D 159 THR D 163 GLY D 167 ARG D 170 SITE 6 AC2 23 TYR D 171 HOH F 101 HOH F 102 CRYST1 74.272 67.092 87.668 90.00 101.30 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013464 0.000000 0.002691 0.00000 SCALE2 0.000000 0.014905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011632 0.00000