HEADER TRANSFERASE/TRANSCRIPTION/INHIBITOR 16-MAY-12 4F7N TITLE CRYSTAL STRUCTURE OF HUMAN CDK8/CYCC IN COMPLEX WITH COMPOUND 11 (1- TITLE 2 [3-TERT-BUTYL-1-(4-METHYLPHENYL)-1H-PYRAZOL-5-YL]-3-(5- TITLE 3 HYDROXYPENTYL)UREA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIN-DEPENDENT KINASE 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-403; COMPND 5 SYNONYM: CELL DIVISION PROTEIN KINASE 8, MEDIATOR COMPLEX SUBUNIT COMPND 6 CDK8, MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT CDK8, COMPND 7 PROTEIN KINASE K35; COMPND 8 EC: 2.7.11.22, 2.7.11.23; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: CYCLIN-C; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: SRB11 HOMOLOG, HSRB11; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDK8; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: CCNC; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS PROTEIN KINASE COMPLEX, PROTEROS, TRANSFERASE-TRANSCRIPTION-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.V.SCHNEIDER,J.BOETTCHER,R.HUBER,K.MASKOS REVDAT 3 13-SEP-23 4F7N 1 REMARK SEQADV REVDAT 2 01-APR-15 4F7N 1 JRNL REVDAT 1 01-MAY-13 4F7N 0 JRNL AUTH E.V.SCHNEIDER,J.BOTTCHER,R.HUBER,K.MASKOS,L.NEUMANN JRNL TITL STRUCTURE-KINETIC RELATIONSHIP STUDY OF CDK8/CYCC SPECIFIC JRNL TITL 2 COMPOUNDS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 8081 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23630251 JRNL DOI 10.1073/PNAS.1305378110 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 26899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.300 REMARK 3 FREE R VALUE TEST SET COUNT : 908 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1921 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.4330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4993 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.43000 REMARK 3 B22 (A**2) : -1.78000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.438 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.261 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.193 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.960 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4972 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4530 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6749 ; 1.178 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10448 ; 0.931 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 597 ; 5.290 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 219 ;33.138 ;23.470 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 815 ;12.227 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;15.202 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 741 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5455 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1048 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 894 ; 0.171 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3973 ; 0.132 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2378 ; 0.162 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2458 ; 0.075 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 84 ; 0.108 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 3 ; 0.083 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 26 ; 0.133 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.129 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3918 ; 1.418 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1199 ; 0.212 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4855 ; 1.741 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2365 ; 2.607 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1894 ; 3.803 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): -0.212 -34.094 153.746 REMARK 3 T TENSOR REMARK 3 T11: 0.0757 T22: 0.0451 REMARK 3 T33: 0.0005 T12: -0.0395 REMARK 3 T13: 0.0415 T23: -0.0490 REMARK 3 L TENSOR REMARK 3 L11: 1.5751 L22: 3.6469 REMARK 3 L33: 0.9198 L12: -1.8986 REMARK 3 L13: 0.6535 L23: -0.7851 REMARK 3 S TENSOR REMARK 3 S11: 0.0736 S12: 0.2152 S13: -0.2254 REMARK 3 S21: -0.4796 S22: -0.0260 S23: -0.0583 REMARK 3 S31: 0.2387 S32: 0.1435 S33: -0.0475 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 361 REMARK 3 ORIGIN FOR THE GROUP (A): -10.776 -4.654 152.130 REMARK 3 T TENSOR REMARK 3 T11: -0.0404 T22: 0.0215 REMARK 3 T33: -0.1081 T12: 0.0116 REMARK 3 T13: 0.0107 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.3071 L22: 3.1331 REMARK 3 L33: 1.2477 L12: 0.3865 REMARK 3 L13: -0.1598 L23: 0.1348 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 0.2734 S13: 0.1117 REMARK 3 S21: -0.3291 S22: 0.0270 S23: -0.0415 REMARK 3 S31: -0.0717 S32: -0.0006 S33: -0.0451 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 265 REMARK 3 ORIGIN FOR THE GROUP (A): 4.648 -34.590 182.646 REMARK 3 T TENSOR REMARK 3 T11: -0.0817 T22: -0.0440 REMARK 3 T33: -0.0503 T12: -0.0379 REMARK 3 T13: -0.0220 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.9215 L22: 1.2158 REMARK 3 L33: 2.3270 L12: -0.3993 REMARK 3 L13: 0.0558 L23: -0.0270 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: -0.0945 S13: -0.1677 REMARK 3 S21: 0.0410 S22: 0.0740 S23: 0.0061 REMARK 3 S31: 0.0819 S32: -0.0214 S33: -0.0717 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4F7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27863 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 90.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.51500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3RGF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2 M SODIUM FORMATE, PH REMARK 280 6.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.07850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.18100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.18100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.07850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A -1 REMARK 465 LYS A 115 REMARK 465 ALA A 116 REMARK 465 ASN A 117 REMARK 465 LYS A 118 REMARK 465 LYS A 119 REMARK 465 PRO A 120 REMARK 465 ALA A 177 REMARK 465 ARG A 178 REMARK 465 LEU A 179 REMARK 465 PHE A 180 REMARK 465 ASN A 181 REMARK 465 SER A 182 REMARK 465 PRO A 183 REMARK 465 LEU A 184 REMARK 465 LYS A 185 REMARK 465 PRO A 186 REMARK 465 LEU A 187 REMARK 465 ALA A 188 REMARK 465 ASP A 189 REMARK 465 LEU A 190 REMARK 465 ASP A 191 REMARK 465 PRO A 192 REMARK 465 VAL A 193 REMARK 465 ASP A 240 REMARK 465 ILE A 241 REMARK 465 LYS A 242 REMARK 465 THR A 243 REMARK 465 SER A 244 REMARK 465 GLU A 362 REMARK 465 GLU A 363 REMARK 465 PRO A 364 REMARK 465 ASP A 365 REMARK 465 ASP A 366 REMARK 465 LYS A 367 REMARK 465 GLY A 368 REMARK 465 ASP A 369 REMARK 465 LYS A 370 REMARK 465 LYS A 371 REMARK 465 ASN A 372 REMARK 465 GLN A 373 REMARK 465 GLN A 374 REMARK 465 GLN A 375 REMARK 465 GLN A 376 REMARK 465 GLN A 377 REMARK 465 GLY A 378 REMARK 465 ASN A 379 REMARK 465 ASN A 380 REMARK 465 HIS A 381 REMARK 465 THR A 382 REMARK 465 ASN A 383 REMARK 465 GLY A 384 REMARK 465 THR A 385 REMARK 465 GLY A 386 REMARK 465 HIS A 387 REMARK 465 PRO A 388 REMARK 465 GLY A 389 REMARK 465 ASN A 390 REMARK 465 GLN A 391 REMARK 465 ASP A 392 REMARK 465 SER A 393 REMARK 465 SER A 394 REMARK 465 HIS A 395 REMARK 465 THR A 396 REMARK 465 GLN A 397 REMARK 465 GLY A 398 REMARK 465 PRO A 399 REMARK 465 PRO A 400 REMARK 465 LEU A 401 REMARK 465 LYS A 402 REMARK 465 LYS A 403 REMARK 465 ASP B -3 REMARK 465 SER B 266 REMARK 465 GLU B 267 REMARK 465 GLY B 268 REMARK 465 GLU B 269 REMARK 465 GLN B 270 REMARK 465 GLY B 271 REMARK 465 PRO B 272 REMARK 465 ASN B 273 REMARK 465 GLY B 274 REMARK 465 SER B 275 REMARK 465 GLN B 276 REMARK 465 ASN B 277 REMARK 465 SER B 278 REMARK 465 SER B 279 REMARK 465 TYR B 280 REMARK 465 SER B 281 REMARK 465 GLN B 282 REMARK 465 SER B 283 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 0 CG CD CE NZ REMARK 480 LYS A 6 CE NZ REMARK 480 GLU A 12 CD OE1 OE2 REMARK 480 GLU A 23 CG CD OE1 OE2 REMARK 480 LYS A 39 CD CE NZ REMARK 480 LYS A 44 CG CD CE NZ REMARK 480 ASP A 46 CG OD1 OD2 REMARK 480 LYS A 47 CG CD CE NZ REMARK 480 LYS A 74 CD CE NZ REMARK 480 LYS A 83 CD CE NZ REMARK 480 LYS A 109 CD CE NZ REMARK 480 ARG A 112 CZ NH1 NH2 REMARK 480 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 237 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 238 CB CG CD OE1 NE2 REMARK 480 GLU A 239 CG CD OE1 OE2 REMARK 480 ASP A 264 CG OD1 OD2 REMARK 480 LYS A 265 CG CD CE NZ REMARK 480 GLU A 268 CD OE1 OE2 REMARK 480 LYS A 271 CD CE NZ REMARK 480 LYS A 272 CD CE NZ REMARK 480 LYS A 281 CE NZ REMARK 480 ARG A 284 NE CZ NH1 NH2 REMARK 480 LYS A 295 CD CE NZ REMARK 480 LYS A 299 CE NZ REMARK 480 LYS A 301 CG CD CE NZ REMARK 480 LYS A 303 CD CE NZ REMARK 480 GLU A 327 CG CD OE1 OE2 REMARK 480 GLN A 350 CG CD OE1 NE2 REMARK 480 GLU A 357 CD OE1 OE2 REMARK 480 THR A 360 OG1 CG2 REMARK 480 GLU A 361 CG CD OE1 OE2 REMARK 480 LYS B -1 CD CE NZ REMARK 480 LYS B 23 CG CD CE NZ REMARK 480 LYS B 30 CD CE NZ REMARK 480 LYS B 56 CE NZ REMARK 480 ARG B 58 CD NE CZ NH1 NH2 REMARK 480 GLN B 60 CG CD OE1 REMARK 480 LYS B 117 CG CD CE NZ REMARK 480 LYS B 126 CG CD CE NZ REMARK 480 ARG B 131 CD NE CZ NH1 NH2 REMARK 480 ARG B 157 CD NE CZ NH1 NH2 REMARK 480 GLU B 169 CD OE1 OE2 REMARK 480 LYS B 211 CG CD CE NZ REMARK 480 ARG B 214 CD NE CZ NH1 NH2 REMARK 480 GLU B 219 CD OE1 OE2 REMARK 480 GLU B 225 CD OE1 OE2 REMARK 480 LYS B 236 CD CE NZ REMARK 480 LYS B 248 CG CD CE NZ REMARK 480 LYS B 259 CG CD CE NZ REMARK 480 LYS B 261 CE NZ REMARK 480 ASN B 265 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 22 -1.29 -150.46 REMARK 500 ASP A 151 41.95 -159.58 REMARK 500 SER A 230 -7.93 79.39 REMARK 500 TRP A 267 80.82 -155.53 REMARK 500 ASP B 223 96.70 -69.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0SV A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F6S RELATED DB: PDB REMARK 900 RELATED ID: 4F6U RELATED DB: PDB REMARK 900 RELATED ID: 4F6W RELATED DB: PDB REMARK 900 RELATED ID: 4F70 RELATED DB: PDB REMARK 900 RELATED ID: 4F7J RELATED DB: PDB REMARK 900 RELATED ID: 4F7L RELATED DB: PDB DBREF 4F7N A 1 403 UNP P49336 CDK8_HUMAN 1 403 DBREF 4F7N B 1 283 UNP P24863 CCNC_HUMAN 1 283 SEQADV 4F7N ASP A -1 UNP P49336 EXPRESSION TAG SEQADV 4F7N LYS A 0 UNP P49336 EXPRESSION TAG SEQADV 4F7N ASP B -3 UNP P24863 EXPRESSION TAG SEQADV 4F7N ASP B -2 UNP P24863 EXPRESSION TAG SEQADV 4F7N LYS B -1 UNP P24863 EXPRESSION TAG SEQADV 4F7N ALA B 0 UNP P24863 EXPRESSION TAG SEQRES 1 A 405 ASP LYS MET ASP TYR ASP PHE LYS VAL LYS LEU SER SER SEQRES 2 A 405 GLU ARG GLU ARG VAL GLU ASP LEU PHE GLU TYR GLU GLY SEQRES 3 A 405 CYS LYS VAL GLY ARG GLY THR TYR GLY HIS VAL TYR LYS SEQRES 4 A 405 ALA LYS ARG LYS ASP GLY LYS ASP ASP LYS ASP TYR ALA SEQRES 5 A 405 LEU LYS GLN ILE GLU GLY THR GLY ILE SER MET SER ALA SEQRES 6 A 405 CYS ARG GLU ILE ALA LEU LEU ARG GLU LEU LYS HIS PRO SEQRES 7 A 405 ASN VAL ILE SER LEU GLN LYS VAL PHE LEU SER HIS ALA SEQRES 8 A 405 ASP ARG LYS VAL TRP LEU LEU PHE ASP TYR ALA GLU HIS SEQRES 9 A 405 ASP LEU TRP HIS ILE ILE LYS PHE HIS ARG ALA SER LYS SEQRES 10 A 405 ALA ASN LYS LYS PRO VAL GLN LEU PRO ARG GLY MET VAL SEQRES 11 A 405 LYS SER LEU LEU TYR GLN ILE LEU ASP GLY ILE HIS TYR SEQRES 12 A 405 LEU HIS ALA ASN TRP VAL LEU HIS ARG ASP LEU LYS PRO SEQRES 13 A 405 ALA ASN ILE LEU VAL MET GLY GLU GLY PRO GLU ARG GLY SEQRES 14 A 405 ARG VAL LYS ILE ALA ASP MET GLY PHE ALA ARG LEU PHE SEQRES 15 A 405 ASN SER PRO LEU LYS PRO LEU ALA ASP LEU ASP PRO VAL SEQRES 16 A 405 VAL VAL THR PHE TRP TYR ARG ALA PRO GLU LEU LEU LEU SEQRES 17 A 405 GLY ALA ARG HIS TYR THR LYS ALA ILE ASP ILE TRP ALA SEQRES 18 A 405 ILE GLY CYS ILE PHE ALA GLU LEU LEU THR SER GLU PRO SEQRES 19 A 405 ILE PHE HIS CYS ARG GLN GLU ASP ILE LYS THR SER ASN SEQRES 20 A 405 PRO TYR HIS HIS ASP GLN LEU ASP ARG ILE PHE ASN VAL SEQRES 21 A 405 MET GLY PHE PRO ALA ASP LYS ASP TRP GLU ASP ILE LYS SEQRES 22 A 405 LYS MET PRO GLU HIS SER THR LEU MET LYS ASP PHE ARG SEQRES 23 A 405 ARG ASN THR TYR THR ASN CYS SER LEU ILE LYS TYR MET SEQRES 24 A 405 GLU LYS HIS LYS VAL LYS PRO ASP SER LYS ALA PHE HIS SEQRES 25 A 405 LEU LEU GLN LYS LEU LEU THR MET ASP PRO ILE LYS ARG SEQRES 26 A 405 ILE THR SER GLU GLN ALA MET GLN ASP PRO TYR PHE LEU SEQRES 27 A 405 GLU ASP PRO LEU PRO THR SER ASP VAL PHE ALA GLY CYS SEQRES 28 A 405 GLN ILE PRO TYR PRO LYS ARG GLU PHE LEU THR GLU GLU SEQRES 29 A 405 GLU PRO ASP ASP LYS GLY ASP LYS LYS ASN GLN GLN GLN SEQRES 30 A 405 GLN GLN GLY ASN ASN HIS THR ASN GLY THR GLY HIS PRO SEQRES 31 A 405 GLY ASN GLN ASP SER SER HIS THR GLN GLY PRO PRO LEU SEQRES 32 A 405 LYS LYS SEQRES 1 B 287 ASP ASP LYS ALA MET ALA GLY ASN PHE TRP GLN SER SER SEQRES 2 B 287 HIS TYR LEU GLN TRP ILE LEU ASP LYS GLN ASP LEU LEU SEQRES 3 B 287 LYS GLU ARG GLN LYS ASP LEU LYS PHE LEU SER GLU GLU SEQRES 4 B 287 GLU TYR TRP LYS LEU GLN ILE PHE PHE THR ASN VAL ILE SEQRES 5 B 287 GLN ALA LEU GLY GLU HIS LEU LYS LEU ARG GLN GLN VAL SEQRES 6 B 287 ILE ALA THR ALA THR VAL TYR PHE LYS ARG PHE TYR ALA SEQRES 7 B 287 ARG TYR SER LEU LYS SER ILE ASP PRO VAL LEU MET ALA SEQRES 8 B 287 PRO THR CYS VAL PHE LEU ALA SER LYS VAL GLU GLU PHE SEQRES 9 B 287 GLY VAL VAL SER ASN THR ARG LEU ILE ALA ALA ALA THR SEQRES 10 B 287 SER VAL LEU LYS THR ARG PHE SER TYR ALA PHE PRO LYS SEQRES 11 B 287 GLU PHE PRO TYR ARG MET ASN HIS ILE LEU GLU CYS GLU SEQRES 12 B 287 PHE TYR LEU LEU GLU LEU MET ASP CYS CYS LEU ILE VAL SEQRES 13 B 287 TYR HIS PRO TYR ARG PRO LEU LEU GLN TYR VAL GLN ASP SEQRES 14 B 287 MET GLY GLN GLU ASP MET LEU LEU PRO LEU ALA TRP ARG SEQRES 15 B 287 ILE VAL ASN ASP THR TYR ARG THR ASP LEU CYS LEU LEU SEQRES 16 B 287 TYR PRO PRO PHE MET ILE ALA LEU ALA CYS LEU HIS VAL SEQRES 17 B 287 ALA CYS VAL VAL GLN GLN LYS ASP ALA ARG GLN TRP PHE SEQRES 18 B 287 ALA GLU LEU SER VAL ASP MET GLU LYS ILE LEU GLU ILE SEQRES 19 B 287 ILE ARG VAL ILE LEU LYS LEU TYR GLU GLN TRP LYS ASN SEQRES 20 B 287 PHE ASP GLU ARG LYS GLU MET ALA THR ILE LEU SER LYS SEQRES 21 B 287 MET PRO LYS PRO LYS PRO PRO PRO ASN SER GLU GLY GLU SEQRES 22 B 287 GLN GLY PRO ASN GLY SER GLN ASN SER SER TYR SER GLN SEQRES 23 B 287 SER HET 0SV A 501 26 HET EDO A 502 4 HET EDO B 301 4 HETNAM 0SV 1-[3-TERT-BUTYL-1-(4-METHYLPHENYL)-1H-PYRAZOL-5-YL]-3- HETNAM 2 0SV (5-HYDROXYPENTYL)UREA HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 0SV C20 H30 N4 O2 FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 HOH *61(H2 O) HELIX 1 1 ASP A 2 ARG A 13 1 12 HELIX 2 2 ARG A 15 LEU A 19 1 5 HELIX 3 3 SER A 60 ARG A 71 1 12 HELIX 4 4 LEU A 104 ALA A 113 1 10 HELIX 5 5 PRO A 124 ASN A 145 1 22 HELIX 6 6 LYS A 153 ALA A 155 5 3 HELIX 7 7 ALA A 201 LEU A 206 1 6 HELIX 8 8 THR A 212 SER A 230 1 19 HELIX 9 9 HIS A 248 GLY A 260 1 13 HELIX 10 10 TRP A 267 MET A 273 5 7 HELIX 11 11 GLU A 275 PHE A 283 1 9 HELIX 12 12 ARG A 284 THR A 289 5 6 HELIX 13 13 SER A 292 HIS A 300 1 9 HELIX 14 14 SER A 306 LEU A 316 1 11 HELIX 15 15 ASP A 319 ARG A 323 5 5 HELIX 16 16 THR A 325 GLN A 331 1 7 HELIX 17 17 ASP A 332 GLU A 337 5 6 HELIX 18 18 ASN B 4 GLN B 7 5 4 HELIX 19 19 SER B 8 ILE B 15 1 8 HELIX 20 20 ASP B 17 GLN B 26 1 10 HELIX 21 21 LYS B 27 PHE B 31 5 5 HELIX 22 22 SER B 33 LEU B 55 1 23 HELIX 23 23 ARG B 58 TYR B 76 1 19 HELIX 24 24 ASP B 82 GLU B 98 1 17 HELIX 25 25 SER B 104 PHE B 120 1 17 HELIX 26 26 ARG B 131 MET B 146 1 16 HELIX 27 27 PRO B 155 GLY B 167 1 13 HELIX 28 28 GLN B 168 TYR B 184 1 17 HELIX 29 29 ASP B 187 TYR B 192 1 6 HELIX 30 30 PRO B 193 GLN B 209 1 17 HELIX 31 31 ALA B 213 GLU B 219 1 7 HELIX 32 32 ASP B 223 PHE B 244 1 22 HELIX 33 33 ASP B 245 MET B 257 1 13 SHEET 1 A 3 PHE A 20 GLU A 21 0 SHEET 2 A 3 GLY A 33 ARG A 40 -1 O LYS A 39 N GLU A 21 SHEET 3 A 3 LYS A 26 GLY A 30 -1 N VAL A 27 O VAL A 35 SHEET 1 B 5 PHE A 20 GLU A 21 0 SHEET 2 B 5 GLY A 33 ARG A 40 -1 O LYS A 39 N GLU A 21 SHEET 3 B 5 TYR A 49 ILE A 54 -1 O TYR A 49 N ALA A 38 SHEET 4 B 5 VAL A 93 ASP A 98 -1 O PHE A 97 N ALA A 50 SHEET 5 B 5 LEU A 81 LEU A 86 -1 N GLN A 82 O LEU A 96 SHEET 1 C 3 HIS A 102 ASP A 103 0 SHEET 2 C 3 ILE A 157 VAL A 159 -1 O VAL A 159 N HIS A 102 SHEET 3 C 3 VAL A 169 ILE A 171 -1 O LYS A 170 N LEU A 158 CISPEP 1 ASP A 338 PRO A 339 0 -1.78 SITE 1 AC1 11 ALA A 50 SER A 62 ARG A 65 GLU A 66 SITE 2 AC1 11 LEU A 73 ILE A 79 ASP A 98 TYR A 99 SITE 3 AC1 11 ALA A 100 ALA A 172 ASP A 173 SITE 1 AC2 3 ARG A 71 GLU A 72 SER B 9 SITE 1 AC3 3 LYS B -1 ALA B 0 VAL B 152 CRYST1 72.157 71.760 180.362 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013859 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013935 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005544 0.00000