HEADER OXIDOREDUCTASE 18-MAY-12 4F8Y TITLE COMPLEX STRUCTURE OF NADPH:QUINONE OXIDOREDUCTASE WITH MENADIONE IN TITLE 2 STREPTOCOCCUS MUTANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH QUINONE OXIDOREDUCTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.6.5.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS MUTANS; SOURCE 3 ORGANISM_TAXID: 1309; SOURCE 4 GENE: SMU_1420; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-21B KEYWDS NADPH, QUINONE OXIDOREDUCTASE, FAD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.WANG,L.LI,X.-D.SU REVDAT 2 28-FEB-24 4F8Y 1 REMARK SEQADV REVDAT 1 06-JUN-12 4F8Y 0 JRNL AUTH Z.WANG,L.LI,X.-D.SU JRNL TITL COMPLEX STRUCTURE OF NADPH:QUINONE OXIDOREDUCTASE WITH JRNL TITL 2 MENADIONE IN STREPTOCOCCUS MUTANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 77239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9590 - 4.8518 0.98 3826 189 0.1328 0.1631 REMARK 3 2 4.8518 - 3.8601 0.98 3704 200 0.0801 0.0945 REMARK 3 3 3.8601 - 3.3749 0.98 3701 183 0.0954 0.1305 REMARK 3 4 3.3749 - 3.0675 0.98 3756 194 0.1166 0.1462 REMARK 3 5 3.0675 - 2.8483 0.98 3722 194 0.1457 0.1807 REMARK 3 6 2.8483 - 2.6808 0.98 3716 195 0.1550 0.1835 REMARK 3 7 2.6808 - 2.5468 0.98 3746 203 0.1682 0.1949 REMARK 3 8 2.5468 - 2.4361 0.98 3734 215 0.1738 0.1933 REMARK 3 9 2.4361 - 2.3425 0.98 3712 207 0.1798 0.2121 REMARK 3 10 2.3425 - 2.2618 0.98 3702 203 0.1842 0.2111 REMARK 3 11 2.2618 - 2.1912 0.98 3700 208 0.1888 0.2191 REMARK 3 12 2.1912 - 2.1286 0.98 3753 203 0.1909 0.2200 REMARK 3 13 2.1286 - 2.0726 0.98 3749 180 0.2034 0.2095 REMARK 3 14 2.0726 - 2.0221 0.98 3681 217 0.2138 0.2445 REMARK 3 15 2.0221 - 1.9762 0.98 3719 190 0.2246 0.2449 REMARK 3 16 1.9762 - 1.9342 0.98 3698 205 0.2342 0.2552 REMARK 3 17 1.9342 - 1.8955 0.98 3697 193 0.2455 0.2663 REMARK 3 18 1.8955 - 1.8598 0.98 3593 181 0.2606 0.2945 REMARK 3 19 1.8598 - 1.8266 0.98 3480 176 0.2646 0.3287 REMARK 3 20 1.8266 - 1.7960 0.98 2953 161 0.2706 0.2908 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 47.57 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.57480 REMARK 3 B22 (A**2) : -1.10810 REMARK 3 B33 (A**2) : 0.53330 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.47190 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6603 REMARK 3 ANGLE : 1.084 9039 REMARK 3 CHIRALITY : 0.068 985 REMARK 3 PLANARITY : 0.006 1092 REMARK 3 DIHEDRAL : 18.290 2431 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4F8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072604. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97800 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77264 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.796 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M KCL, 0.05M HEPES PH7.5, 35% V/V REMARK 280 PENTAERYTHRITOL PROPOXYLATE(5/4 PO/OH), EVAPORATION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.70650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 189 REMARK 465 GLU B 190 REMARK 465 HIS B 191 REMARK 465 HIS B 192 REMARK 465 HIS B 193 REMARK 465 HIS B 194 REMARK 465 HIS B 195 REMARK 465 HIS B 196 REMARK 465 LEU D 189 REMARK 465 GLU D 190 REMARK 465 HIS D 191 REMARK 465 HIS D 192 REMARK 465 HIS D 193 REMARK 465 HIS D 194 REMARK 465 HIS D 195 REMARK 465 HIS D 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CE NZ REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 60 CE NZ REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 LYS A 147 CD CE NZ REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 LYS A 168 CG CD CE NZ REMARK 470 ASP A 171 CG OD1 OD2 REMARK 470 GLN A 175 CG CD OE1 NE2 REMARK 470 LYS B 21 CE NZ REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 ARG B 56 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 60 CE NZ REMARK 470 LYS B 110 CG CD CE NZ REMARK 470 LYS B 147 CD CE NZ REMARK 470 LYS B 151 CG CD CE NZ REMARK 470 LYS B 168 CG CD CE NZ REMARK 470 LYS C 21 CE NZ REMARK 470 LYS C 54 CG CD CE NZ REMARK 470 ARG C 56 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 60 CE NZ REMARK 470 LYS C 109 CG CD CE NZ REMARK 470 GLU C 114 CG CD OE1 OE2 REMARK 470 LYS C 147 CD CE NZ REMARK 470 LYS C 151 CG CD CE NZ REMARK 470 LYS C 168 CG CD CE NZ REMARK 470 GLN C 175 CG CD OE1 NE2 REMARK 470 LYS C 180 CG CD CE NZ REMARK 470 LYS D 21 CE NZ REMARK 470 GLU D 30 CG CD OE1 OE2 REMARK 470 LYS D 54 CG CD CE NZ REMARK 470 ARG D 56 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 110 CG CD CE NZ REMARK 470 VAL D 111 CG1 CG2 REMARK 470 GLU D 114 CG CD OE1 OE2 REMARK 470 LYS D 147 CD CE NZ REMARK 470 LYS D 151 CG CD CE NZ REMARK 470 LYS D 168 CG CD CE NZ REMARK 470 GLN D 175 CG CD OE1 NE2 REMARK 470 HIS D 179 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 327 O HOH C 468 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 50 -167.86 -174.43 REMARK 500 ALA A 59 0.86 -67.75 REMARK 500 ASP A 103 4.53 82.99 REMARK 500 PHE A 104 -63.30 -126.04 REMARK 500 ASP A 140 -112.86 63.91 REMARK 500 SER A 165 50.62 33.11 REMARK 500 HIS B 9 135.39 -174.16 REMARK 500 SER B 28 151.48 -49.71 REMARK 500 ASP B 103 -9.09 74.85 REMARK 500 LEU B 117 32.12 -94.32 REMARK 500 ASP B 140 -111.33 64.72 REMARK 500 ILE B 149 -60.36 -122.63 REMARK 500 ALA B 154 7.72 84.54 REMARK 500 ASN B 187 37.34 -90.92 REMARK 500 ASN C 50 -151.26 -171.07 REMARK 500 SER C 86 -11.73 80.31 REMARK 500 PHE C 104 -52.01 -120.62 REMARK 500 ASP C 140 -114.96 68.56 REMARK 500 ILE C 149 -58.26 -124.53 REMARK 500 SER C 156 146.23 -171.40 REMARK 500 ASN D 50 -156.12 -162.06 REMARK 500 LYS D 54 153.11 -44.08 REMARK 500 SER D 86 -1.67 82.39 REMARK 500 ASP D 103 -3.51 79.49 REMARK 500 PHE D 104 -68.64 -124.24 REMARK 500 VAL D 111 -121.23 -74.74 REMARK 500 LEU D 117 31.66 -84.56 REMARK 500 ASP D 140 -117.45 60.31 REMARK 500 ILE D 149 -70.40 -117.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VK3 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VK3 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VK3 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VK3 D 202 DBREF 4F8Y A 1 188 UNP Q8DTD1 Q8DTD1_STRMU 1 188 DBREF 4F8Y B 1 188 UNP Q8DTD1 Q8DTD1_STRMU 1 188 DBREF 4F8Y C 1 188 UNP Q8DTD1 Q8DTD1_STRMU 1 188 DBREF 4F8Y D 1 188 UNP Q8DTD1 Q8DTD1_STRMU 1 188 SEQADV 4F8Y LEU A 189 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y GLU A 190 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS A 191 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS A 192 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS A 193 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS A 194 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS A 195 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS A 196 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y LEU B 189 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y GLU B 190 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS B 191 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS B 192 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS B 193 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS B 194 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS B 195 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS B 196 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y LEU C 189 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y GLU C 190 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS C 191 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS C 192 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS C 193 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS C 194 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS C 195 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS C 196 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y LEU D 189 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y GLU D 190 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS D 191 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS D 192 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS D 193 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS D 194 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS D 195 UNP Q8DTD1 EXPRESSION TAG SEQADV 4F8Y HIS D 196 UNP Q8DTD1 EXPRESSION TAG SEQRES 1 A 196 MET LYS ILE LEU ILE VAL TYR THR HIS PRO ASN PRO THR SEQRES 2 A 196 SER PHE ASN ALA GLU ILE LEU LYS GLN VAL GLN THR ASN SEQRES 3 A 196 LEU SER LYS GLU HIS THR VAL SER THR LEU ASP LEU TYR SEQRES 4 A 196 ALA GLU HIS PHE ASP PRO VAL LEU GLN PHE ASN GLU THR SEQRES 5 A 196 HIS LYS ARG ARG ASP LEU ALA LYS VAL ALA GLU MET GLU SEQRES 6 A 196 LYS TYR ARG ASP LEU VAL THR TRP ALA ASP HIS LEU ILE SEQRES 7 A 196 PHE ILE PHE PRO ILE TRP TRP SER GLY MET PRO ALA ILE SEQRES 8 A 196 LEU LYS GLY PHE ILE ASP ARG VAL PHE VAL ALA ASP PHE SEQRES 9 A 196 ALA TYR SER TYR LYS LYS VAL GLY LEU GLU GLY HIS LEU SEQRES 10 A 196 GLN GLY LYS SER ALA TRP ILE ILE THR THR HIS ASN THR SEQRES 11 A 196 PRO SER PHE ALA MET PRO PHE VAL GLN ASP TYR GLY LYS SEQRES 12 A 196 VAL LEU LYS LYS GLN ILE LEU LYS PRO CYS ALA ILE SER SEQRES 13 A 196 PRO VAL LYS LEU THR GLU LEU THR SER ILE GLU LYS ILE SEQRES 14 A 196 SER ASP ASP GLU ARG GLN LYS LEU LEU HIS LYS VAL ALA SEQRES 15 A 196 GLN ILE THR ARG ASN ILE LEU GLU HIS HIS HIS HIS HIS SEQRES 16 A 196 HIS SEQRES 1 B 196 MET LYS ILE LEU ILE VAL TYR THR HIS PRO ASN PRO THR SEQRES 2 B 196 SER PHE ASN ALA GLU ILE LEU LYS GLN VAL GLN THR ASN SEQRES 3 B 196 LEU SER LYS GLU HIS THR VAL SER THR LEU ASP LEU TYR SEQRES 4 B 196 ALA GLU HIS PHE ASP PRO VAL LEU GLN PHE ASN GLU THR SEQRES 5 B 196 HIS LYS ARG ARG ASP LEU ALA LYS VAL ALA GLU MET GLU SEQRES 6 B 196 LYS TYR ARG ASP LEU VAL THR TRP ALA ASP HIS LEU ILE SEQRES 7 B 196 PHE ILE PHE PRO ILE TRP TRP SER GLY MET PRO ALA ILE SEQRES 8 B 196 LEU LYS GLY PHE ILE ASP ARG VAL PHE VAL ALA ASP PHE SEQRES 9 B 196 ALA TYR SER TYR LYS LYS VAL GLY LEU GLU GLY HIS LEU SEQRES 10 B 196 GLN GLY LYS SER ALA TRP ILE ILE THR THR HIS ASN THR SEQRES 11 B 196 PRO SER PHE ALA MET PRO PHE VAL GLN ASP TYR GLY LYS SEQRES 12 B 196 VAL LEU LYS LYS GLN ILE LEU LYS PRO CYS ALA ILE SER SEQRES 13 B 196 PRO VAL LYS LEU THR GLU LEU THR SER ILE GLU LYS ILE SEQRES 14 B 196 SER ASP ASP GLU ARG GLN LYS LEU LEU HIS LYS VAL ALA SEQRES 15 B 196 GLN ILE THR ARG ASN ILE LEU GLU HIS HIS HIS HIS HIS SEQRES 16 B 196 HIS SEQRES 1 C 196 MET LYS ILE LEU ILE VAL TYR THR HIS PRO ASN PRO THR SEQRES 2 C 196 SER PHE ASN ALA GLU ILE LEU LYS GLN VAL GLN THR ASN SEQRES 3 C 196 LEU SER LYS GLU HIS THR VAL SER THR LEU ASP LEU TYR SEQRES 4 C 196 ALA GLU HIS PHE ASP PRO VAL LEU GLN PHE ASN GLU THR SEQRES 5 C 196 HIS LYS ARG ARG ASP LEU ALA LYS VAL ALA GLU MET GLU SEQRES 6 C 196 LYS TYR ARG ASP LEU VAL THR TRP ALA ASP HIS LEU ILE SEQRES 7 C 196 PHE ILE PHE PRO ILE TRP TRP SER GLY MET PRO ALA ILE SEQRES 8 C 196 LEU LYS GLY PHE ILE ASP ARG VAL PHE VAL ALA ASP PHE SEQRES 9 C 196 ALA TYR SER TYR LYS LYS VAL GLY LEU GLU GLY HIS LEU SEQRES 10 C 196 GLN GLY LYS SER ALA TRP ILE ILE THR THR HIS ASN THR SEQRES 11 C 196 PRO SER PHE ALA MET PRO PHE VAL GLN ASP TYR GLY LYS SEQRES 12 C 196 VAL LEU LYS LYS GLN ILE LEU LYS PRO CYS ALA ILE SER SEQRES 13 C 196 PRO VAL LYS LEU THR GLU LEU THR SER ILE GLU LYS ILE SEQRES 14 C 196 SER ASP ASP GLU ARG GLN LYS LEU LEU HIS LYS VAL ALA SEQRES 15 C 196 GLN ILE THR ARG ASN ILE LEU GLU HIS HIS HIS HIS HIS SEQRES 16 C 196 HIS SEQRES 1 D 196 MET LYS ILE LEU ILE VAL TYR THR HIS PRO ASN PRO THR SEQRES 2 D 196 SER PHE ASN ALA GLU ILE LEU LYS GLN VAL GLN THR ASN SEQRES 3 D 196 LEU SER LYS GLU HIS THR VAL SER THR LEU ASP LEU TYR SEQRES 4 D 196 ALA GLU HIS PHE ASP PRO VAL LEU GLN PHE ASN GLU THR SEQRES 5 D 196 HIS LYS ARG ARG ASP LEU ALA LYS VAL ALA GLU MET GLU SEQRES 6 D 196 LYS TYR ARG ASP LEU VAL THR TRP ALA ASP HIS LEU ILE SEQRES 7 D 196 PHE ILE PHE PRO ILE TRP TRP SER GLY MET PRO ALA ILE SEQRES 8 D 196 LEU LYS GLY PHE ILE ASP ARG VAL PHE VAL ALA ASP PHE SEQRES 9 D 196 ALA TYR SER TYR LYS LYS VAL GLY LEU GLU GLY HIS LEU SEQRES 10 D 196 GLN GLY LYS SER ALA TRP ILE ILE THR THR HIS ASN THR SEQRES 11 D 196 PRO SER PHE ALA MET PRO PHE VAL GLN ASP TYR GLY LYS SEQRES 12 D 196 VAL LEU LYS LYS GLN ILE LEU LYS PRO CYS ALA ILE SER SEQRES 13 D 196 PRO VAL LYS LEU THR GLU LEU THR SER ILE GLU LYS ILE SEQRES 14 D 196 SER ASP ASP GLU ARG GLN LYS LEU LEU HIS LYS VAL ALA SEQRES 15 D 196 GLN ILE THR ARG ASN ILE LEU GLU HIS HIS HIS HIS HIS SEQRES 16 D 196 HIS HET FAD A 201 53 HET VK3 A 202 13 HET FAD B 201 53 HET VK3 B 202 13 HET FAD C 201 53 HET VK3 C 202 13 HET FAD D 201 53 HET VK3 D 202 13 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM VK3 MENADIONE HETSYN VK3 VITAMIN K3; 2-METHYL-1,4-NAPHTHALENEDIONE FORMUL 5 FAD 4(C27 H33 N9 O15 P2) FORMUL 6 VK3 4(C11 H8 O2) FORMUL 13 HOH *558(H2 O) HELIX 1 1 SER A 14 LEU A 27 1 14 HELIX 2 2 LYS A 54 VAL A 61 5 8 HELIX 3 3 MET A 64 ALA A 74 1 11 HELIX 4 4 PRO A 89 PHE A 100 1 12 HELIX 5 5 PRO A 131 MET A 135 5 5 HELIX 6 6 GLY A 142 ILE A 149 1 8 HELIX 7 7 SER A 170 ASN A 187 1 18 HELIX 8 8 SER B 14 LEU B 27 1 14 HELIX 9 9 LYS B 54 GLU B 63 5 10 HELIX 10 10 MET B 64 ALA B 74 1 11 HELIX 11 11 PRO B 89 PHE B 100 1 12 HELIX 12 12 ALA B 134 VAL B 138 5 5 HELIX 13 13 GLY B 142 ILE B 149 1 8 HELIX 14 14 LEU B 150 ALA B 154 5 5 HELIX 15 15 SER B 170 ASN B 187 1 18 HELIX 16 16 SER C 14 LEU C 27 1 14 HELIX 17 17 LYS C 54 GLU C 63 5 10 HELIX 18 18 MET C 64 ALA C 74 1 11 HELIX 19 19 PRO C 89 PHE C 100 1 12 HELIX 20 20 ALA C 134 VAL C 138 5 5 HELIX 21 21 GLY C 142 GLN C 148 1 7 HELIX 22 22 LEU C 150 ALA C 154 5 5 HELIX 23 23 SER C 170 ASN C 187 1 18 HELIX 24 24 SER D 14 LEU D 27 1 14 HELIX 25 25 LYS D 54 GLU D 63 5 10 HELIX 26 26 MET D 64 ALA D 74 1 11 HELIX 27 27 PRO D 89 PHE D 100 1 12 HELIX 28 28 ALA D 134 VAL D 138 5 5 HELIX 29 29 GLY D 142 GLN D 148 1 7 HELIX 30 30 LEU D 150 ALA D 154 5 5 HELIX 31 31 SER D 170 ILE D 188 1 19 SHEET 1 A 5 THR A 32 ASP A 37 0 SHEET 2 A 5 LYS A 2 TYR A 7 1 N ILE A 5 O LEU A 36 SHEET 3 A 5 HIS A 76 PRO A 82 1 O ILE A 78 N VAL A 6 SHEET 4 A 5 LYS A 120 THR A 127 1 O ILE A 125 N PHE A 79 SHEET 5 A 5 ILE A 155 LEU A 163 1 O THR A 161 N ILE A 124 SHEET 1 B 2 TYR A 106 TYR A 108 0 SHEET 2 B 2 LEU A 113 GLY A 115 -1 O GLU A 114 N SER A 107 SHEET 1 C 5 THR B 32 ASP B 37 0 SHEET 2 C 5 LYS B 2 TYR B 7 1 N ILE B 5 O LEU B 36 SHEET 3 C 5 HIS B 76 PRO B 82 1 O ILE B 78 N LEU B 4 SHEET 4 C 5 SER B 121 THR B 127 1 O ILE B 125 N PHE B 79 SHEET 5 C 5 VAL B 158 LEU B 163 1 O LYS B 159 N ILE B 124 SHEET 1 D 2 TYR B 106 TYR B 108 0 SHEET 2 D 2 LEU B 113 GLY B 115 -1 O GLU B 114 N SER B 107 SHEET 1 E 5 THR C 32 ASP C 37 0 SHEET 2 E 5 LYS C 2 TYR C 7 1 N ILE C 5 O LEU C 36 SHEET 3 E 5 HIS C 76 PRO C 82 1 O HIS C 76 N LEU C 4 SHEET 4 E 5 SER C 121 THR C 127 1 O ILE C 125 N PHE C 79 SHEET 5 E 5 VAL C 158 LEU C 163 1 O LYS C 159 N ILE C 124 SHEET 1 F 2 TYR C 106 TYR C 108 0 SHEET 2 F 2 LEU C 113 GLY C 115 -1 O GLU C 114 N SER C 107 SHEET 1 G 5 THR D 32 ASP D 37 0 SHEET 2 G 5 LYS D 2 TYR D 7 1 N ILE D 5 O LEU D 36 SHEET 3 G 5 HIS D 76 PRO D 82 1 O ILE D 78 N LEU D 4 SHEET 4 G 5 SER D 121 THR D 127 1 O ILE D 125 N PHE D 79 SHEET 5 G 5 VAL D 158 LEU D 163 1 O THR D 161 N ILE D 124 SHEET 1 H 2 TYR D 106 TYR D 108 0 SHEET 2 H 2 LEU D 113 GLY D 115 -1 O GLU D 114 N SER D 107 CISPEP 1 SER A 156 PRO A 157 0 -2.41 CISPEP 2 SER B 156 PRO B 157 0 -0.07 CISPEP 3 SER C 156 PRO C 157 0 -0.07 CISPEP 4 SER D 156 PRO D 157 0 0.60 SITE 1 AC1 28 HIS A 9 SER A 14 PHE A 15 ASN A 16 SITE 2 AC1 28 GLU A 18 PRO A 82 ILE A 83 TRP A 84 SITE 3 AC1 28 TRP A 85 SER A 86 THR A 127 HIS A 128 SITE 4 AC1 28 ASN A 129 THR A 130 TYR A 141 ILE A 166 SITE 5 AC1 28 GLU A 167 ARG A 174 HOH A 311 HOH A 365 SITE 6 AC1 28 HOH A 415 HOH A 418 HOH A 452 LEU B 47 SITE 7 AC1 28 ARG B 55 VK3 B 202 HOH B 306 HOH B 358 SITE 1 AC2 9 ARG A 55 TYR A 106 TYR A 108 LEU A 113 SITE 2 AC2 9 HOH A 344 HOH A 389 HOH A 438 TRP B 85 SITE 3 AC2 9 FAD B 201 SITE 1 AC3 33 LEU A 47 ARG A 55 VK3 A 202 HOH A 303 SITE 2 AC3 33 HOH A 333 HOH A 372 HIS B 9 SER B 14 SITE 3 AC3 33 PHE B 15 ASN B 16 GLU B 18 PRO B 82 SITE 4 AC3 33 ILE B 83 TRP B 84 TRP B 85 SER B 86 SITE 5 AC3 33 THR B 127 HIS B 128 ASN B 129 THR B 130 SITE 6 AC3 33 TYR B 141 GLU B 167 ASP B 171 ARG B 174 SITE 7 AC3 33 GLN B 175 HOH B 318 HOH B 319 HOH B 322 SITE 8 AC3 33 HOH B 328 HOH B 330 HOH B 352 HOH B 386 SITE 9 AC3 33 HOH B 391 SITE 1 AC4 9 TRP A 85 ASN A 129 FAD A 201 HOH A 419 SITE 2 AC4 9 HOH A 451 TYR B 106 TYR B 108 LEU B 113 SITE 3 AC4 9 HOH B 402 SITE 1 AC5 25 HIS C 9 SER C 14 PHE C 15 ASN C 16 SITE 2 AC5 25 GLU C 18 ILE C 83 TRP C 84 TRP C 85 SITE 3 AC5 25 SER C 86 THR C 127 HIS C 128 ASN C 129 SITE 4 AC5 25 THR C 130 TYR C 141 GLU C 167 ARG C 174 SITE 5 AC5 25 HOH C 327 HOH C 333 HOH C 352 HOH C 399 SITE 6 AC5 25 HOH C 419 HOH C 424 HOH C 468 ARG D 55 SITE 7 AC5 25 VK3 D 202 SITE 1 AC6 12 ARG C 55 TYR C 106 TYR C 108 HOH C 420 SITE 2 AC6 12 HOH C 433 HOH C 446 HOH C 447 HOH C 463 SITE 3 AC6 12 HOH C 464 TRP D 85 ASN D 129 FAD D 201 SITE 1 AC7 27 LEU C 47 ARG C 55 VK3 C 202 HOH C 371 SITE 2 AC7 27 HIS D 9 SER D 14 PHE D 15 ASN D 16 SITE 3 AC7 27 GLU D 18 PRO D 82 ILE D 83 TRP D 84 SITE 4 AC7 27 TRP D 85 SER D 86 THR D 127 HIS D 128 SITE 5 AC7 27 ASN D 129 THR D 130 TYR D 141 GLU D 167 SITE 6 AC7 27 ASP D 171 ARG D 174 HOH D 308 HOH D 320 SITE 7 AC7 27 HOH D 354 HOH D 363 HOH D 408 SITE 1 AC8 10 LYS C 110 FAD C 201 HOH C 333 HOH C 427 SITE 2 AC8 10 HOH C 443 ARG D 55 TYR D 106 TYR D 108 SITE 3 AC8 10 LEU D 113 HOH D 392 CRYST1 50.614 79.413 106.502 90.00 90.08 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019757 0.000000 0.000028 0.00000 SCALE2 0.000000 0.012592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009390 0.00000