HEADER RIBOSOMAL PROTEIN 21-MAY-12 4F9T TITLE RIBOSOMAL PROTEIN L1 FROM THERMUS THERMOPHILUS WITH SUBSTITUTION TITLE 2 THR217ALA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L1; COMPND 3 CHAIN: A; COMPND 4 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274 KEYWDS ROSSMANN FOLD, RIBOSOMAL PROTEIN, RNA EXPDTA X-RAY DIFFRACTION AUTHOR V.G.KLJASHTORNY,S.A.VOLCHKOV,E.Y.NIKONOVA,O.S.KOSTAREVA, AUTHOR 2 S.V.TISHCHENKO,N.A.NEVSKAYA,S.V.NIKONOV REVDAT 4 28-FEB-24 4F9T 1 REMARK SEQADV REVDAT 3 13-JUN-18 4F9T 1 REMARK REVDAT 2 12-NOV-14 4F9T 1 KEYWDS REVDAT 1 08-AUG-12 4F9T 0 JRNL AUTH E.I.U.NIKONOVA,S.A.VOLCHKOV,V.G.KLIASHTORNYI,S.V.TISHCHENKO, JRNL AUTH 2 O.S.KOSTAREVA,N.A.NEVSKAIA,O.S.NIKONOV,A.G.GABDULKHAKOV, JRNL AUTH 3 A.D.NIKULIN,N.L.DAVYDOVA,V.A.STREL'TSOV,M.B.GARBER, JRNL AUTH 4 S.V.NIKONOV JRNL TITL [CRYSTAL STRUCTURES OF MUTANT RIBOSOMAL PROTEINS L1]. JRNL REF MOL.BIOL.(MOSCOW) V. 41 688 2007 JRNL REFN ISSN 0026-8984 JRNL PMID 17936990 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 36430 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1916 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.50 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2488 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1720 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.04000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : -1.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.100 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.895 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2167 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2964 ; 1.428 ; 2.020 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 291 ; 3.200 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;26.858 ;23.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 395 ; 9.053 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;11.823 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 322 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1594 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1053 ; 0.248 ; 1.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1389 ; 0.319 ; 1.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 416 ; 0.184 ; 1.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 83 ; 0.242 ; 1.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 88 ; 0.194 ; 1.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1335 ; 7.535 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2112 ; 8.296 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 904 ; 8.494 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 829 ;10.087 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2239 ; 8.589 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 314 ;24.757 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2120 ;15.101 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4F9T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : COLLIMATOR 0.3X0.3 REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38090 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : 0.04500 REMARK 200 FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.13900 REMARK 200 R SYM FOR SHELL (I) : 0.19500 REMARK 200 FOR SHELL : 9.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 MG/ML L1 50 MM GLYCINE,INITIALLY AT REMARK 280 PH 10 5% (V/V)METHANE PENTANEDIOL 1.2 M AMMONIUM SULFATE REMARK 280 EQUILIBRATED AGAINST 2.4 M AMMONIUM SULFATE 7% (V/V) METHANE REMARK 280 PENTANEDIOL , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.47000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.06000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.47000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.06000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 409 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 411 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 548 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LYS A 5 REMARK 465 ARG A 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 9 5.97 -69.78 REMARK 500 GLU A 31 -40.63 -176.92 REMARK 500 LYS A 70 -86.11 -72.18 REMARK 500 GLN A 71 23.20 -38.68 REMARK 500 MET A 108 51.98 -149.67 REMARK 500 MET A 108 50.74 -149.11 REMARK 500 MET A 218 -61.92 -97.93 REMARK 500 MET A 218 -64.96 -95.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 314 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1I2A RELATED DB: PDB REMARK 900 L1 FROM METHANOCOCCUS JANNASCHII REMARK 900 RELATED ID: 1MZP RELATED DB: PDB REMARK 900 STRUCTURE OF THE L1 PROTUBERANCE IN THE RIBOSOME REMARK 900 RELATED ID: 1U63 RELATED DB: PDB REMARK 900 L1-MRNA COMPLEX FROM METHANOCOCCUS JANNASCHII REMARK 900 RELATED ID: 1AD2 RELATED DB: PDB REMARK 900 L1 MUTANT WITH SERINE 179 REPLACED BY CYSTEINE REMARK 900 RELATED ID: 1ZHO RELATED DB: PDB REMARK 900 L1 IN COMPLEX WITH MRNA AT 2.6 RESOLUTION REMARK 900 RELATED ID: 2HW8 RELATED DB: PDB REMARK 900 L1-MRNA COMPLEX AT 2.1 RESOLUTION REMARK 900 RELATED ID: 2OUM RELATED DB: PDB REMARK 900 THE FIRST DOMAIN OF L1 FROM THERMUS THERMOPHILUS REMARK 900 RELATED ID: 2OV7 RELATED DB: PDB REMARK 900 THE FIRST DOMAIN OF L1 FROM THERMUS THERMOPHILUS REMARK 900 RELATED ID: 2VPL RELATED DB: PDB REMARK 900 THE STRUCTURE OF THE COMPLEX BETWEEN THE FIRST DOMAIN OF L1 PROTEIN REMARK 900 FROM THERMUS THERMOPHILUS AND MRNA FROM METHANOCOCCUS JANNASCHII DBREF 4F9T A 0 228 UNP P27150 RL1_THETH 1 229 SEQADV 4F9T ALA A 217 UNP P27150 THR 218 ENGINEERED MUTATION SEQRES 1 A 229 MET PRO LYS HIS GLY LYS ARG TYR ARG ALA LEU LEU GLU SEQRES 2 A 229 LYS VAL ASP PRO ASN LYS ILE TYR THR ILE ASP GLU ALA SEQRES 3 A 229 ALA HIS LEU VAL LYS GLU LEU ALA THR ALA LYS PHE ASP SEQRES 4 A 229 GLU THR VAL GLU VAL HIS ALA LYS LEU GLY ILE ASP PRO SEQRES 5 A 229 ARG ARG SER ASP GLN ASN VAL ARG GLY THR VAL SER LEU SEQRES 6 A 229 PRO HIS GLY LEU GLY LYS GLN VAL ARG VAL LEU ALA ILE SEQRES 7 A 229 ALA LYS GLY GLU LYS ILE LYS GLU ALA GLU GLU ALA GLY SEQRES 8 A 229 ALA ASP TYR VAL GLY GLY GLU GLU ILE ILE GLN LYS ILE SEQRES 9 A 229 LEU ASP GLY TRP MET ASP PHE ASP ALA VAL VAL ALA THR SEQRES 10 A 229 PRO ASP VAL MET GLY ALA VAL GLY SER LYS LEU GLY ARG SEQRES 11 A 229 ILE LEU GLY PRO ARG GLY LEU LEU PRO ASN PRO LYS ALA SEQRES 12 A 229 GLY THR VAL GLY PHE ASN ILE GLY GLU ILE ILE ARG GLU SEQRES 13 A 229 ILE LYS ALA GLY ARG ILE GLU PHE ARG ASN ASP LYS THR SEQRES 14 A 229 GLY ALA ILE HIS ALA PRO VAL GLY LYS ALA SER PHE PRO SEQRES 15 A 229 PRO GLU LYS LEU ALA ASP ASN ILE ARG ALA PHE ILE ARG SEQRES 16 A 229 ALA LEU GLU ALA HIS LYS PRO GLU GLY ALA LYS GLY THR SEQRES 17 A 229 PHE LEU ARG SER VAL TYR VAL THR THR ALA MET GLY PRO SEQRES 18 A 229 SER VAL ARG ILE ASN PRO HIS SER HET MPD A 301 8 HET MPD A 302 8 HET MPD A 303 16 HET MRD A 304 8 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET SO4 A 308 5 HET SO4 A 309 5 HET SO4 A 310 5 HET SO4 A 311 5 HET SO4 A 312 5 HET SO4 A 313 5 HET SO4 A 314 5 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM SO4 SULFATE ION FORMUL 2 MPD 3(C6 H14 O2) FORMUL 5 MRD C6 H14 O2 FORMUL 6 SO4 10(O4 S 2-) FORMUL 16 HOH *305(H2 O) HELIX 1 1 ARG A 8 LYS A 13 1 6 HELIX 2 2 THR A 21 ALA A 33 1 13 HELIX 3 3 ARG A 53 ASN A 57 5 5 HELIX 4 4 GLY A 80 ALA A 89 1 10 HELIX 5 5 GLU A 98 ASP A 105 1 8 HELIX 6 6 VAL A 119 GLY A 135 1 17 HELIX 7 7 ASN A 148 ALA A 158 1 11 HELIX 8 8 PRO A 181 HIS A 199 1 19 SHEET 1 A 4 ALA A 170 LYS A 177 0 SHEET 2 A 4 THR A 40 LEU A 47 -1 N VAL A 41 O VAL A 175 SHEET 3 A 4 LEU A 209 THR A 215 -1 O THR A 215 N GLU A 42 SHEET 4 A 4 VAL A 222 ARG A 223 -1 O VAL A 222 N VAL A 214 SHEET 1 B 2 ARG A 59 VAL A 62 0 SHEET 2 B 2 ILE A 161 ARG A 164 -1 O PHE A 163 N GLY A 60 SHEET 1 C 3 TYR A 93 GLY A 95 0 SHEET 2 C 3 VAL A 74 ILE A 77 1 N VAL A 74 O TYR A 93 SHEET 3 C 3 ALA A 112 ALA A 115 1 O VAL A 114 N LEU A 75 SITE 1 AC1 7 GLY A 67 VAL A 72 ASP A 111 GLY A 176 SITE 2 AC1 7 LYS A 177 MPD A 303 HOH A 473 SITE 1 AC2 7 ARG A 8 LEU A 11 GLU A 12 ILE A 193 SITE 2 AC2 7 GLU A 197 HIS A 227 HOH A 653 SITE 1 AC3 13 THR A 40 ALA A 112 VAL A 113 GLY A 135 SITE 2 AC3 13 LEU A 136 ILE A 161 PRO A 174 LYS A 177 SITE 3 AC3 13 MPD A 301 HOH A 440 HOH A 441 HOH A 597 SITE 4 AC3 13 HOH A 611 SITE 1 AC4 6 LYS A 2 ASN A 148 GLU A 151 GLU A 155 SITE 2 AC4 6 GLU A 162 HOH A 528 SITE 1 AC5 11 ARG A 53 LYS A 79 GLY A 80 ILE A 83 SITE 2 AC5 11 GLY A 96 HOH A 420 HOH A 471 HOH A 555 SITE 3 AC5 11 HOH A 590 HOH A 683 HOH A 684 SITE 1 AC6 10 GLU A 197 LYS A 200 THR A 207 PHE A 208 SITE 2 AC6 10 LEU A 209 HIS A 227 HOH A 449 HOH A 477 SITE 3 AC6 10 HOH A 564 HOH A 671 SITE 1 AC7 8 PRO A 65 HIS A 66 GLY A 67 GLN A 71 SITE 2 AC7 8 LYS A 184 HOH A 406 HOH A 696 HOH A 704 SITE 1 AC8 6 LYS A 18 GLY A 60 THR A 61 HIS A 199 SITE 2 AC8 6 HOH A 491 HOH A 634 SITE 1 AC9 9 HIS A 27 GLN A 101 LYS A 126 PRO A 182 SITE 2 AC9 9 GLU A 183 HOH A 427 HOH A 553 HOH A 642 SITE 3 AC9 9 HOH A 647 SITE 1 BC1 4 TYR A 7 LYS A 82 SER A 221 HOH A 576 SITE 1 BC2 4 HIS A 172 HOH A 452 HOH A 570 HOH A 573 SITE 1 BC3 5 LYS A 2 HIS A 3 GLY A 4 TYR A 7 SITE 2 BC3 5 MET A 218 SITE 1 BC4 6 HIS A 44 TYR A 213 THR A 215 SER A 221 SITE 2 BC4 6 HOH A 516 HOH A 680 SITE 1 BC5 6 THR A 34 ALA A 35 LYS A 36 ARG A 73 SITE 2 BC5 6 HOH A 588 HOH A 674 CRYST1 80.940 62.120 43.620 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012355 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016098 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022925 0.00000