HEADER TRANSFERASE, HYDROLASE 21-MAY-12 4F9V TITLE STRUCTURE OF C113A/C136A MUTANT VARIANT OF GLYCOSYLATED GLUTAMINYL TITLE 2 CYCLASE FROM DROSOPHILA MELANOGASTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CG32412; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 29-340; COMPND 5 SYNONYM: GLUTAMINYL-PEPTIDE CYCLOTRANSFERASE, GH11174P; COMPND 6 EC: 2.3.2.5, 3.4.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: QC, CG10487, CG32412, DMEL_CG32412; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: PICHIA PASTORIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: X33; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PPICZALPHAB KEYWDS ALPHA/BETA HYDROLASE, PGLU FORMATION, PE, ALZHEIMER'S DISEASE, KEYWDS 2 PYROGLUTAMATE, PGLU-AMYLOID, GLYCOSYLATION, TRANSFERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.KOLENKO,B.KOCH,D.RUIZ-CARILO,M.T.STUBBS REVDAT 4 13-SEP-23 4F9V 1 HETSYN REVDAT 3 29-JUL-20 4F9V 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 26-SEP-12 4F9V 1 JRNL REVDAT 1 29-AUG-12 4F9V 0 JRNL AUTH B.KOCH,P.KOLENKO,M.BUCHHOLZ,D.RUIZ CARRILLO,C.PARTHIER, JRNL AUTH 2 M.WERMANN,J.U.RAHFELD,G.REUTER,S.SCHILLING,M.T.STUBBS, JRNL AUTH 3 H.U.DEMUTH JRNL TITL CRYSTAL STRUCTURES OF GLUTAMINYL CYCLASES (QCS) FROM JRNL TITL 2 DROSOPHILA MELANOGASTER REVEAL ACTIVE SITE CONSERVATION JRNL TITL 3 BETWEEN INSECT AND MAMMALIAN QCS. JRNL REF BIOCHEMISTRY V. 51 7383 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22897232 JRNL DOI 10.1021/BI300687G REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 55179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2807 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4075 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4854 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 175 REMARK 3 SOLVENT ATOMS : 685 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : -0.67000 REMARK 3 B33 (A**2) : 1.01000 REMARK 3 B12 (A**2) : -0.34000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.789 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5174 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3491 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7040 ; 1.414 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8398 ; 0.901 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 607 ; 5.809 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 266 ;33.515 ;23.609 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 791 ;13.158 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;18.888 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 782 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5730 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1112 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3028 ; 0.726 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1221 ; 0.163 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4887 ; 1.340 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2146 ; 2.080 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2152 ; 3.311 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4F9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55179 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 147.973 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.67800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4F9U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG8000, 2 MM PQ50, 0.1 M MES, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.15733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.07867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.61800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 9.53933 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.69667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 29 REMARK 465 PHE A 337 REMARK 465 TYR A 338 REMARK 465 ARG A 339 REMARK 465 THR A 340 REMARK 465 ASN B 29 REMARK 465 ILE B 30 REMARK 465 GLY B 31 REMARK 465 SER B 32 REMARK 465 SER B 197 REMARK 465 GLY B 198 REMARK 465 SER B 199 REMARK 465 GLN B 200 REMARK 465 ALA B 201 REMARK 465 GLN B 202 REMARK 465 LEU B 203 REMARK 465 ARG B 339 REMARK 465 THR B 340 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 657 O HOH A 664 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 52 52.24 -151.79 REMARK 500 VAL A 88 -54.51 75.24 REMARK 500 ASN A 102 60.60 61.61 REMARK 500 ASP A 123 63.43 -152.01 REMARK 500 LYS A 152 -76.96 -127.24 REMARK 500 SER A 181 158.25 171.16 REMARK 500 ASP A 272 -176.56 -174.00 REMARK 500 THR A 330 -78.24 -133.88 REMARK 500 ARG B 52 48.28 -150.65 REMARK 500 VAL B 88 -60.68 82.51 REMARK 500 ASN B 102 61.49 70.11 REMARK 500 LYS B 152 -91.86 -123.94 REMARK 500 SER B 181 157.79 172.15 REMARK 500 ALA B 251 3.85 -69.81 REMARK 500 ASP B 272 -174.77 -172.05 REMARK 500 THR B 330 -71.85 -122.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 131 OD2 REMARK 620 2 GLU A 171 OE2 105.6 REMARK 620 3 HIS A 297 NE2 100.8 114.2 REMARK 620 4 PBD A 402 NAM 115.9 113.1 106.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 131 OD2 REMARK 620 2 GLU B 171 OE2 106.1 REMARK 620 3 HIS B 297 NE2 98.2 119.2 REMARK 620 4 PBD B 402 NAM 114.2 109.6 109.3 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F9U RELATED DB: PDB REMARK 900 RELATED ID: 4FAI RELATED DB: PDB REMARK 900 RELATED ID: 4FBE RELATED DB: PDB DBREF 4F9V A 29 340 UNP Q9VRQ9 Q9VRQ9_DROME 29 340 DBREF 4F9V B 29 340 UNP Q9VRQ9 Q9VRQ9_DROME 29 340 SEQADV 4F9V ALA A 113 UNP Q9VRQ9 CYS 113 ENGINEERED MUTATION SEQADV 4F9V ALA A 136 UNP Q9VRQ9 CYS 136 ENGINEERED MUTATION SEQADV 4F9V ALA B 113 UNP Q9VRQ9 CYS 113 ENGINEERED MUTATION SEQADV 4F9V ALA B 136 UNP Q9VRQ9 CYS 136 ENGINEERED MUTATION SEQRES 1 A 312 ASN ILE GLY SER GLN TRP ARG ASP ASP GLU VAL HIS PHE SEQRES 2 A 312 ASN ARG THR LEU ASP SER ILE LEU VAL PRO ARG VAL VAL SEQRES 3 A 312 GLY SER ARG GLY HIS GLN GLN VAL ARG GLU TYR LEU VAL SEQRES 4 A 312 GLN SER LEU ASN GLY LEU GLY PHE GLN THR GLU VAL ASP SEQRES 5 A 312 GLU PHE LYS GLN ARG VAL PRO VAL PHE GLY GLU LEU THR SEQRES 6 A 312 PHE ALA ASN VAL VAL GLY THR ILE ASN PRO GLN ALA GLN SEQRES 7 A 312 ASN PHE LEU ALA LEU ALA ALA HIS TYR ASP SER LYS TYR SEQRES 8 A 312 PHE PRO ASN ASP PRO GLY PHE VAL GLY ALA THR ASP SER SEQRES 9 A 312 ALA VAL PRO ALA ALA ILE LEU LEU ASN THR ALA LYS THR SEQRES 10 A 312 LEU GLY ALA TYR LEU GLN LYS GLU PHE ARG ASN ARG SER SEQRES 11 A 312 ASP VAL GLY LEU MET LEU ILE PHE PHE ASP GLY GLU GLU SEQRES 12 A 312 ALA PHE LYS GLU TRP THR ASP ALA ASP SER VAL TYR GLY SEQRES 13 A 312 SER LYS HIS LEU ALA ALA LYS LEU ALA SER LYS ARG SER SEQRES 14 A 312 GLY SER GLN ALA GLN LEU ALA PRO ARG ASN ILE ASP ARG SEQRES 15 A 312 ILE GLU VAL LEU VAL LEU LEU ASP LEU ILE GLY ALA ARG SEQRES 16 A 312 ASN PRO LYS PHE SER SER PHE TYR GLU ASN THR ASP GLY SEQRES 17 A 312 LEU HIS SER SER LEU VAL GLN ILE GLU LYS SER LEU ARG SEQRES 18 A 312 THR ALA GLY GLN LEU GLU GLY ASN ASN ASN MET PHE LEU SEQRES 19 A 312 SER ARG VAL SER GLY GLY LEU VAL ASP ASP ASP HIS ARG SEQRES 20 A 312 PRO PHE LEU ASP GLU ASN VAL PRO VAL LEU HIS LEU VAL SEQRES 21 A 312 ALA THR PRO PHE PRO ASP VAL TRP HIS THR PRO ARG ASP SEQRES 22 A 312 ASN ALA ALA ASN LEU HIS TRP PRO SER ILE ARG ASN PHE SEQRES 23 A 312 ASN ARG VAL PHE ARG ASN PHE VAL TYR GLN TYR LEU LYS SEQRES 24 A 312 ARG HIS THR SER PRO VAL ASN LEU ARG PHE TYR ARG THR SEQRES 1 B 312 ASN ILE GLY SER GLN TRP ARG ASP ASP GLU VAL HIS PHE SEQRES 2 B 312 ASN ARG THR LEU ASP SER ILE LEU VAL PRO ARG VAL VAL SEQRES 3 B 312 GLY SER ARG GLY HIS GLN GLN VAL ARG GLU TYR LEU VAL SEQRES 4 B 312 GLN SER LEU ASN GLY LEU GLY PHE GLN THR GLU VAL ASP SEQRES 5 B 312 GLU PHE LYS GLN ARG VAL PRO VAL PHE GLY GLU LEU THR SEQRES 6 B 312 PHE ALA ASN VAL VAL GLY THR ILE ASN PRO GLN ALA GLN SEQRES 7 B 312 ASN PHE LEU ALA LEU ALA ALA HIS TYR ASP SER LYS TYR SEQRES 8 B 312 PHE PRO ASN ASP PRO GLY PHE VAL GLY ALA THR ASP SER SEQRES 9 B 312 ALA VAL PRO ALA ALA ILE LEU LEU ASN THR ALA LYS THR SEQRES 10 B 312 LEU GLY ALA TYR LEU GLN LYS GLU PHE ARG ASN ARG SER SEQRES 11 B 312 ASP VAL GLY LEU MET LEU ILE PHE PHE ASP GLY GLU GLU SEQRES 12 B 312 ALA PHE LYS GLU TRP THR ASP ALA ASP SER VAL TYR GLY SEQRES 13 B 312 SER LYS HIS LEU ALA ALA LYS LEU ALA SER LYS ARG SER SEQRES 14 B 312 GLY SER GLN ALA GLN LEU ALA PRO ARG ASN ILE ASP ARG SEQRES 15 B 312 ILE GLU VAL LEU VAL LEU LEU ASP LEU ILE GLY ALA ARG SEQRES 16 B 312 ASN PRO LYS PHE SER SER PHE TYR GLU ASN THR ASP GLY SEQRES 17 B 312 LEU HIS SER SER LEU VAL GLN ILE GLU LYS SER LEU ARG SEQRES 18 B 312 THR ALA GLY GLN LEU GLU GLY ASN ASN ASN MET PHE LEU SEQRES 19 B 312 SER ARG VAL SER GLY GLY LEU VAL ASP ASP ASP HIS ARG SEQRES 20 B 312 PRO PHE LEU ASP GLU ASN VAL PRO VAL LEU HIS LEU VAL SEQRES 21 B 312 ALA THR PRO PHE PRO ASP VAL TRP HIS THR PRO ARG ASP SEQRES 22 B 312 ASN ALA ALA ASN LEU HIS TRP PRO SER ILE ARG ASN PHE SEQRES 23 B 312 ASN ARG VAL PHE ARG ASN PHE VAL TYR GLN TYR LEU LYS SEQRES 24 B 312 ARG HIS THR SER PRO VAL ASN LEU ARG PHE TYR ARG THR MODRES 4F9V ASN B 42 ASN GLYCOSYLATION SITE MODRES 4F9V ASN A 42 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET MAN C 6 11 HET MAN C 7 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET ZN A 401 1 HET PBD A 402 22 HET ZN B 401 1 HET PBD B 402 22 HET PEG B 406 7 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM ZN ZINC ION HETNAM PBD 1-(3,4-DIMETHOXYPHENYL)-3-[3-(1H-IMIDAZOL-1-YL) HETNAM 2 PBD PROPYL]THIOUREA HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 5 ZN 2(ZN 2+) FORMUL 6 PBD 2(C15 H20 N4 O2 S) FORMUL 9 PEG C4 H10 O3 FORMUL 10 HOH *685(H2 O) HELIX 1 1 ILE A 30 TRP A 34 5 5 HELIX 2 2 ASP A 37 LEU A 49 1 13 HELIX 3 3 SER A 56 LEU A 73 1 18 HELIX 4 4 SER A 132 LEU A 146 1 15 HELIX 5 5 LEU A 146 GLN A 151 1 6 HELIX 6 6 LYS A 152 ASN A 156 5 5 HELIX 7 7 VAL A 182 SER A 194 1 13 HELIX 8 8 GLY A 198 ALA A 204 1 7 HELIX 9 9 ARG A 206 ASP A 209 5 4 HELIX 10 10 TYR A 231 ASN A 233 5 3 HELIX 11 11 THR A 234 ALA A 251 1 18 HELIX 12 12 HIS A 274 ASP A 279 1 6 HELIX 13 13 ASN A 302 LEU A 306 5 5 HELIX 14 14 HIS A 307 HIS A 329 1 23 HELIX 15 15 ASP B 37 LEU B 49 1 13 HELIX 16 16 SER B 56 LEU B 73 1 18 HELIX 17 17 SER B 132 LEU B 146 1 15 HELIX 18 18 LEU B 146 GLN B 151 1 6 HELIX 19 19 LYS B 152 ASN B 156 5 5 HELIX 20 20 VAL B 182 LYS B 195 1 14 HELIX 21 21 ASN B 207 ASP B 209 5 3 HELIX 22 22 TYR B 231 ASN B 233 5 3 HELIX 23 23 THR B 234 ALA B 251 1 18 HELIX 24 24 HIS B 274 ASP B 279 1 6 HELIX 25 25 ASN B 302 LEU B 306 5 5 HELIX 26 26 HIS B 307 HIS B 329 1 23 SHEET 1 A 6 GLN A 76 VAL A 86 0 SHEET 2 A 6 GLY A 90 ILE A 101 -1 O THR A 100 N GLN A 76 SHEET 3 A 6 VAL A 160 PHE A 167 -1 O PHE A 166 N VAL A 97 SHEET 4 A 6 ASN A 107 HIS A 114 1 N LEU A 111 O ILE A 165 SHEET 5 A 6 ILE A 211 ASP A 218 1 O LEU A 217 N ALA A 112 SHEET 6 A 6 VAL A 284 VAL A 288 1 O LEU A 287 N LEU A 216 SHEET 1 B 2 PHE A 227 SER A 229 0 SHEET 2 B 2 PHE A 261 VAL A 265 1 O LEU A 262 N PHE A 227 SHEET 1 C 6 GLN B 76 VAL B 86 0 SHEET 2 C 6 GLY B 90 ILE B 101 -1 O VAL B 98 N GLU B 78 SHEET 3 C 6 VAL B 160 PHE B 167 -1 O LEU B 164 N GLY B 99 SHEET 4 C 6 ASN B 107 HIS B 114 1 N LEU B 111 O ILE B 165 SHEET 5 C 6 ILE B 211 ASP B 218 1 O VAL B 215 N ALA B 110 SHEET 6 C 6 VAL B 284 VAL B 288 1 O LEU B 285 N LEU B 216 SHEET 1 D 2 PHE B 227 SER B 229 0 SHEET 2 D 2 PHE B 261 VAL B 265 1 O ARG B 264 N SER B 229 LINK ND2 ASN A 42 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 42 C1 NAG D 1 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 6 1555 1555 1.45 LINK O2 MAN C 4 C1 MAN C 5 1555 1555 1.46 LINK O3 MAN C 6 C1 MAN C 7 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK OD2 ASP A 131 ZN ZN A 401 1555 1555 1.99 LINK OE2 GLU A 171 ZN ZN A 401 1555 1555 1.86 LINK NE2 HIS A 297 ZN ZN A 401 1555 1555 2.15 LINK ZN ZN A 401 NAM PBD A 402 1555 1555 1.93 LINK OD2 ASP B 131 ZN ZN B 401 1555 1555 1.99 LINK OE2 GLU B 171 ZN ZN B 401 1555 1555 1.94 LINK NE2 HIS B 297 ZN ZN B 401 1555 1555 1.97 LINK ZN ZN B 401 NAM PBD B 402 1555 1555 2.07 CISPEP 1 ASP A 131 SER A 132 0 2.32 CISPEP 2 THR A 290 PRO A 291 0 -1.69 CISPEP 3 ASP B 131 SER B 132 0 -2.88 CISPEP 4 THR B 290 PRO B 291 0 -0.60 CRYST1 170.865 170.865 57.236 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005853 0.003379 0.000000 0.00000 SCALE2 0.000000 0.006758 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017472 0.00000