HEADER PEPTIDE BINDING PROTEIN 22-MAY-12 4FAJ TITLE STRUCTURE AND MODE OF PEPTIDE BINDING OF PHEROMONE RECEPTOR PRGZ COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRGZ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SEX PHEROMONE CCF10; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351; SOURCE 4 GENE: PRGZ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 10 ORGANISM_TAXID: 1351; SOURCE 11 OTHER_DETAILS: SYNTHESIZED CCF10 PEPTIDE KEYWDS SUBSTRATE BINDING PROTEIN, PEPTIDE BINDING PROTEIN, PHEROMONE, KEYWDS 2 EXTRACELLULAR, MEMBRANE ANCHORED EXPDTA X-RAY DIFFRACTION AUTHOR R.P.-A.BERNTSSON,G.K.SCHUURMAN-WOLTERS,K.DUNNY,D.J.SLOTBOOM,B.POOLMAN REVDAT 5 28-FEB-24 4FAJ 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 4FAJ 1 AUTHOR REVDAT 3 12-DEC-12 4FAJ 1 LINK REVDAT 2 14-NOV-12 4FAJ 1 JRNL REMARK REVDAT 1 12-SEP-12 4FAJ 0 JRNL AUTH R.P.BERNTSSON,G.K.SCHUURMAN-WOLTERS,G.DUNNY,D.J.SLOTBOOM, JRNL AUTH 2 B.POOLMAN JRNL TITL STRUCTURE AND MODE OF PEPTIDE BINDING OF PHEROMONE RECEPTOR JRNL TITL 2 PRGZ. JRNL REF J.BIOL.CHEM. V. 287 37165 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22948145 JRNL DOI 10.1074/JBC.M112.386334 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 45929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2297 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3156 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.1640 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.1980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4038 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.899 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4220 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2846 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5712 ; 1.115 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7051 ; 0.829 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 533 ; 5.549 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;38.794 ;26.720 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 789 ;13.350 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;12.910 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 644 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4674 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 747 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2622 ; 0.559 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1059 ; 0.123 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4252 ; 1.057 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1598 ; 1.709 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1460 ; 2.903 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 564 REMARK 3 RESIDUE RANGE : A 601 A 608 REMARK 3 RESIDUE RANGE : A 701 A 1111 REMARK 3 ORIGIN FOR THE GROUP (A): 33.9728 4.3213 11.5281 REMARK 3 T TENSOR REMARK 3 T11: 0.0188 T22: 0.0149 REMARK 3 T33: 0.0338 T12: -0.0158 REMARK 3 T13: -0.0036 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.4824 L22: 0.3818 REMARK 3 L33: 0.5580 L12: -0.1277 REMARK 3 L13: -0.1805 L23: -0.0779 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: 0.0228 S13: -0.0442 REMARK 3 S21: 0.0121 S22: 0.0006 S23: 0.0107 REMARK 3 S31: 0.0377 S32: -0.0255 S33: 0.0167 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4FAJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072660. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45969 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.71600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M ZINC SULFATE, 0.1 M MES, 25% REMARK 280 W/V PEG 550 MME, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.31100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.31100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.06100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.31100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.31100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.06100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 GLY A 12 REMARK 465 GLU A 13 REMARK 465 ASN A 14 REMARK 465 LEU A 15 REMARK 465 THR A 16 REMARK 465 PHE A 17 REMARK 465 GLN A 18 REMARK 465 GLY A 19 REMARK 465 MET A 20 REMARK 465 LYS A 21 REMARK 465 LYS A 22 REMARK 465 TYR A 23 REMARK 465 LYS A 24 REMARK 465 LYS A 25 REMARK 465 PHE A 26 REMARK 465 CYS A 27 REMARK 465 PHE A 28 REMARK 465 LEU A 29 REMARK 465 GLY A 30 REMARK 465 ILE A 31 REMARK 465 GLY A 32 REMARK 465 LEU A 33 REMARK 465 LEU A 34 REMARK 465 PRO A 35 REMARK 465 LEU A 36 REMARK 465 VAL A 37 REMARK 465 LEU A 38 REMARK 465 ALA A 39 REMARK 465 SER A 40 REMARK 465 CYS A 41 REMARK 465 GLY A 42 REMARK 465 THR A 43 REMARK 465 ASN A 44 REMARK 465 THR A 45 REMARK 465 ALA A 46 REMARK 465 THR A 47 REMARK 465 LYS A 48 REMARK 465 ASP A 49 REMARK 465 SER A 50 REMARK 465 GLN A 51 REMARK 465 ASP A 52 REMARK 465 ALA A 53 REMARK 465 THR A 54 REMARK 465 GLU A 55 REMARK 465 LYS A 56 REMARK 465 LYS A 57 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 251 O HOH A 1063 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 106 -89.30 -116.31 REMARK 500 ASN A 167 -7.87 76.23 REMARK 500 ASN A 236 20.26 -147.98 REMARK 500 LEU A 244 105.54 -160.47 REMARK 500 THR A 249 -30.12 -132.67 REMARK 500 ASN A 358 27.82 -147.81 REMARK 500 ASN A 390 89.30 -153.56 REMARK 500 ASN A 410 119.56 -163.90 REMARK 500 THR A 411 60.15 -118.97 REMARK 500 THR A 463 -70.30 -111.36 REMARK 500 ILE A 530 -69.97 -108.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 321 LEU A 322 149.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 263 OD2 REMARK 620 2 ASP A 266 OD2 103.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 279 OE2 REMARK 620 2 TYR A 301 OH 105.0 REMARK 620 3 GLU A 384 OE1 103.9 105.7 REMARK 620 4 GLU A 384 OE1 118.9 95.3 125.0 REMARK 620 5 GLU A 421 OE2 120.9 117.1 102.4 26.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 606 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 370 OE2 REMARK 620 2 GLU A 370 OE1 53.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 608 DBREF 4FAJ A 20 564 UNP Q51643 Q51643_ENTFL 1 545 DBREF 4FAJ B 1 7 UNP P20104 CCF1_ENTFL 1 7 SEQADV 4FAJ MET A 1 UNP Q51643 EXPRESSION TAG SEQADV 4FAJ HIS A 2 UNP Q51643 EXPRESSION TAG SEQADV 4FAJ HIS A 3 UNP Q51643 EXPRESSION TAG SEQADV 4FAJ HIS A 4 UNP Q51643 EXPRESSION TAG SEQADV 4FAJ HIS A 5 UNP Q51643 EXPRESSION TAG SEQADV 4FAJ HIS A 6 UNP Q51643 EXPRESSION TAG SEQADV 4FAJ HIS A 7 UNP Q51643 EXPRESSION TAG SEQADV 4FAJ HIS A 8 UNP Q51643 EXPRESSION TAG SEQADV 4FAJ HIS A 9 UNP Q51643 EXPRESSION TAG SEQADV 4FAJ HIS A 10 UNP Q51643 EXPRESSION TAG SEQADV 4FAJ HIS A 11 UNP Q51643 EXPRESSION TAG SEQADV 4FAJ GLY A 12 UNP Q51643 EXPRESSION TAG SEQADV 4FAJ GLU A 13 UNP Q51643 EXPRESSION TAG SEQADV 4FAJ ASN A 14 UNP Q51643 EXPRESSION TAG SEQADV 4FAJ LEU A 15 UNP Q51643 EXPRESSION TAG SEQADV 4FAJ THR A 16 UNP Q51643 EXPRESSION TAG SEQADV 4FAJ PHE A 17 UNP Q51643 EXPRESSION TAG SEQADV 4FAJ GLN A 18 UNP Q51643 EXPRESSION TAG SEQADV 4FAJ GLY A 19 UNP Q51643 EXPRESSION TAG SEQRES 1 A 564 MET HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS GLY GLU SEQRES 2 A 564 ASN LEU THR PHE GLN GLY MET LYS LYS TYR LYS LYS PHE SEQRES 3 A 564 CYS PHE LEU GLY ILE GLY LEU LEU PRO LEU VAL LEU ALA SEQRES 4 A 564 SER CYS GLY THR ASN THR ALA THR LYS ASP SER GLN ASP SEQRES 5 A 564 ALA THR GLU LYS LYS VAL GLU GLN VAL ALA THR LEU THR SEQRES 6 A 564 ALA GLY THR PRO VAL GLN SER LEU ASP PRO ALA THR ALA SEQRES 7 A 564 VAL ASP GLN THR SER ILE THR LEU LEU ALA ASN VAL MET SEQRES 8 A 564 GLU GLY LEU TYR ARG LEU ASP GLU LYS ASN GLN PRO GLN SEQRES 9 A 564 PRO ALA ILE ALA ALA GLY GLN PRO LYS VAL SER ASN ASN SEQRES 10 A 564 GLY LYS THR TYR THR ILE VAL ILE ARG ASP GLY ALA LYS SEQRES 11 A 564 TRP SER ASP GLY THR GLN ILE THR ALA SER ASP PHE VAL SEQRES 12 A 564 ALA ALA TRP GLN ARG VAL VAL ASP PRO LYS THR VAL SER SEQRES 13 A 564 PRO ASN VAL GLU LEU PHE SER ALA ILE LYS ASN ALA LYS SEQRES 14 A 564 GLU ILE ALA SER GLY LYS GLN ALA LYS ASP THR LEU ALA SEQRES 15 A 564 VAL LYS SER ILE GLY GLU LYS THR LEU GLU ILE GLU LEU SEQRES 16 A 564 VAL GLU PRO THR PRO TYR PHE THR ASP LEU LEU SER LEU SEQRES 17 A 564 THR ALA TYR TYR PRO VAL GLN GLN LYS ALA ILE LYS GLU SEQRES 18 A 564 TYR GLY LYS ASP TYR GLY VAL SER GLN LYS ALA ILE VAL SEQRES 19 A 564 THR ASN GLY ALA PHE ASN LEU THR ASN LEU GLU GLY VAL SEQRES 20 A 564 GLY THR SER ASP LYS TRP THR ILE SER LYS ASN LYS GLU SEQRES 21 A 564 TYR TRP ASP GLN LYS ASP VAL SER MET ASP LYS ILE ASN SEQRES 22 A 564 PHE GLN VAL VAL LYS GLU ILE ASN THR GLY ILE ASN LEU SEQRES 23 A 564 TYR ASN ASP GLY GLN LEU ASP GLU ALA PRO LEU ALA GLY SEQRES 24 A 564 GLU TYR ALA LYS GLN TYR LYS LYS ASP LYS GLU TYR SER SEQRES 25 A 564 THR THR LEU MET ALA ASN THR MET PHE LEU GLU MET ASN SEQRES 26 A 564 GLN THR GLY GLU ASN LYS LEU LEU GLN ASN LYS ASN VAL SEQRES 27 A 564 ARG LYS ALA ILE ASN TYR ALA ILE ASP ARG GLU SER LEU SEQRES 28 A 564 VAL LYS LYS LEU LEU ASP ASN GLY SER VAL ALA SER VAL SEQRES 29 A 564 GLY VAL VAL PRO LYS GLU MET ALA PHE ASN PRO VAL ASN SEQRES 30 A 564 LYS LYS ASP PHE ALA ASN GLU LYS LEU VAL GLU PHE ASN SEQRES 31 A 564 LYS LYS GLN ALA GLU GLU TYR TRP ASP LYS ALA LYS LYS SEQRES 32 A 564 GLU ILE ASP LEU SER LYS ASN THR SER LEU ASP LEU LEU SEQRES 33 A 564 VAL SER ASP GLY GLU PHE GLU LYS LYS ALA GLY GLU PHE SEQRES 34 A 564 LEU GLN GLY GLN LEU GLN ASP SER LEU GLU GLY LEU LYS SEQRES 35 A 564 VAL THR VAL THR PRO ILE PRO ALA ASN VAL PHE MET GLU SEQRES 36 A 564 ARG LEU THR LYS LYS ASP PHE THR LEU SER LEU SER GLY SEQRES 37 A 564 TRP GLN ALA ASP TYR ALA ASP PRO ILE SER PHE LEU ALA SEQRES 38 A 564 ASN PHE GLU THR ASN SER PRO MET ASN HIS GLY GLY TYR SEQRES 39 A 564 SER ASN LYS ASN TYR ASP GLU LEU LEU LYS ASP SER SER SEQRES 40 A 564 SER LYS ARG TRP GLN GLU LEU LYS LYS ALA GLU LYS LEU SEQRES 41 A 564 LEU ILE ASN ASP MET GLY VAL VAL PRO ILE PHE GLN VAL SEQRES 42 A 564 GLY THR ALA LYS LEU GLU LYS SER LYS ILE LYS ASN VAL SEQRES 43 A 564 LEU MET HIS SER ILE GLY ALA LYS TYR ASP TYR LYS LYS SEQRES 44 A 564 MET ARG ILE GLU LYS SEQRES 1 B 7 LEU VAL THR LEU VAL PHE VAL HET GOL A 601 6 HET GOL A 602 6 HET ZN A 603 1 HET ZN A 604 1 HET ZN A 605 1 HET ZN A 606 1 HET GOL A 607 6 HET GOL A 608 6 HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 4(C3 H8 O3) FORMUL 5 ZN 4(ZN 2+) FORMUL 11 HOH *420(H2 O) HELIX 1 1 ASP A 80 MET A 91 1 12 HELIX 2 2 THR A 138 ASP A 151 1 14 HELIX 3 3 PRO A 152 VAL A 155 5 4 HELIX 4 4 ASN A 158 SER A 163 5 6 HELIX 5 5 ASN A 167 SER A 173 1 7 HELIX 6 6 ALA A 177 LEU A 181 5 5 HELIX 7 7 TYR A 201 LEU A 206 1 6 HELIX 8 8 SER A 207 TYR A 212 5 6 HELIX 9 9 GLN A 215 GLY A 223 1 9 HELIX 10 10 LYS A 224 TYR A 226 5 3 HELIX 11 11 ASP A 263 VAL A 267 5 5 HELIX 12 12 GLU A 279 ASP A 289 1 11 HELIX 13 13 ALA A 298 LYS A 306 1 9 HELIX 14 14 ASN A 330 ASN A 335 1 6 HELIX 15 15 ASN A 335 ILE A 346 1 12 HELIX 16 16 ASP A 347 LEU A 355 1 9 HELIX 17 17 ASN A 390 LYS A 403 1 14 HELIX 18 18 GLY A 420 LEU A 438 1 19 HELIX 19 19 PRO A 449 LYS A 460 1 12 HELIX 20 20 PRO A 476 ALA A 481 1 6 HELIX 21 21 ASN A 482 GLU A 484 5 3 HELIX 22 22 ASN A 496 LEU A 503 1 8 HELIX 23 23 LYS A 509 MET A 525 1 17 SHEET 1 A 4 VAL A 61 ALA A 66 0 SHEET 2 A 4 LYS A 271 VAL A 276 1 O ASN A 273 N ALA A 62 SHEET 3 A 4 LYS A 252 LYS A 257 -1 N TRP A 253 O PHE A 274 SHEET 4 A 4 PHE A 239 ASN A 243 -1 N ASN A 240 O SER A 256 SHEET 1 B 2 TYR A 95 LEU A 97 0 SHEET 2 B 2 PRO A 103 PRO A 105 -1 O GLN A 104 N ARG A 96 SHEET 1 C 4 LYS A 113 SER A 115 0 SHEET 2 C 4 THR A 120 VAL A 124 -1 O THR A 120 N SER A 115 SHEET 3 C 4 THR A 190 GLU A 194 -1 O ILE A 193 N TYR A 121 SHEET 4 C 4 VAL A 183 ILE A 186 -1 N LYS A 184 O GLU A 192 SHEET 1 D 6 GLU A 294 LEU A 297 0 SHEET 2 D 6 VAL A 528 GLU A 539 -1 O ALA A 536 N LEU A 297 SHEET 3 D 6 TYR A 311 MET A 324 -1 N MET A 320 O PHE A 531 SHEET 4 D 6 LEU A 464 GLN A 470 -1 O SER A 467 N PHE A 321 SHEET 5 D 6 SER A 412 SER A 418 1 N LEU A 416 O LEU A 466 SHEET 6 D 6 LYS A 442 ILE A 448 1 O THR A 446 N LEU A 415 SHEET 1 E 5 VAL A 361 ALA A 362 0 SHEET 2 E 5 VAL A 528 GLU A 539 -1 O GLN A 532 N VAL A 361 SHEET 3 E 5 TYR A 311 MET A 324 -1 N MET A 320 O PHE A 531 SHEET 4 E 5 LEU A 464 GLN A 470 -1 O SER A 467 N PHE A 321 SHEET 5 E 5 VAL B 2 THR B 3 -1 O THR B 3 N GLY A 468 SHEET 1 F 2 ILE A 543 LYS A 544 0 SHEET 2 F 2 ARG A 561 ILE A 562 -1 O ARG A 561 N LYS A 544 SHEET 1 G 2 LEU A 547 MET A 548 0 SHEET 2 G 2 TYR A 555 ASP A 556 -1 O ASP A 556 N LEU A 547 LINK OD2 ASP A 263 ZN ZN A 603 1555 1555 2.11 LINK OD2 ASP A 266 ZN ZN A 603 1555 1555 1.96 LINK OE2 GLU A 279 ZN ZN A 604 1555 1555 1.99 LINK OH TYR A 301 ZN ZN A 604 1555 1555 2.00 LINK OD1 ASP A 357 ZN ZN A 605 1555 1555 2.19 LINK OE2 GLU A 370 ZN ZN A 606 1555 1555 2.16 LINK OE1 GLU A 370 ZN ZN A 606 1555 1555 2.69 LINK OE1 GLU A 384 ZN ZN A 604 3645 1555 1.87 LINK OE1 GLU A 384 ZN ZN A 604 1555 3655 1.87 LINK OE2 GLU A 421 ZN ZN A 604 1555 1555 2.01 SITE 1 AC1 9 GLU A 160 LEU A 161 SER A 163 ALA A 164 SITE 2 AC1 9 TYR A 201 LEU A 205 TYR A 473 HOH A 934 SITE 3 AC1 9 HOH A1043 SITE 1 AC2 10 TYR A 95 ARG A 96 LEU A 97 SER A 207 SITE 2 AC2 10 TYR A 212 GLY A 552 ALA A 553 HOH A 709 SITE 3 AC2 10 HOH A 826 HOH A 935 SITE 1 AC3 3 ASP A 263 ASP A 266 LYS A 559 SITE 1 AC4 5 GLU A 279 TYR A 301 GLU A 384 GLU A 421 SITE 2 AC4 5 LYS A 519 SITE 1 AC5 2 LYS A 306 ASP A 357 SITE 1 AC6 1 GLU A 370 SITE 1 AC7 6 GLY A 299 GLU A 300 GLU A 384 LYS A 425 SITE 2 AC7 6 LYS A 519 HOH A 970 SITE 1 AC8 4 THR A 63 GLN A 291 GLN A 393 GLU A 396 CRYST1 68.622 74.122 112.622 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014573 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013491 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008879 0.00000