data_4FAK # _entry.id 4FAK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4FAK pdb_00004fak 10.2210/pdb4fak/pdb RCSB RCSB072661 ? ? WWPDB D_1000072661 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4FAK _pdbx_database_status.recvd_initial_deposition_date 2012-05-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Safo, M.K.' 1 'Musayev, F.N.' 2 'Boundy, S.' 3 'Archer, G.L.' 4 'Rife, J.P.' 5 ;O'Farrell, H.C. ; 6 # _citation.id primary _citation.title ;Characterization of the Staphylococcus aureus rRNA Methyltransferase Encoded by orfX, the Gene Containing the Staphylococcal Chromosome Cassette mec (SCCmec) Insertion Site. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 288 _citation.page_first 132 _citation.page_last 140 _citation.year 2013 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23150671 _citation.pdbx_database_id_DOI 10.1074/jbc.M112.385138 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Boundy, S.' 1 ? primary 'Safo, M.K.' 2 ? primary 'Wang, L.' 3 ? primary 'Musayev, F.N.' 4 ? primary ;O'Farrell, H.C. ; 5 ? primary 'Rife, J.P.' 6 ? primary 'Archer, G.L.' 7 ? # _cell.entry_id 4FAK _cell.length_a 77.800 _cell.length_b 84.290 _cell.length_c 55.730 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4FAK _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ribosomal RNA large subunit methyltransferase H' 18752.818 1 2.1.1.177 ? ? ? 2 non-polymer syn S-ADENOSYLMETHIONINE 398.437 1 ? ? ? ? 3 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 1 ? ? ? ? 4 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 5 water nat water 18.015 177 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;23S rRNA (pseudouridine1915-N3)-methyltransferase, 23S rRNA m3Psi1915 methyltransferase, rRNA (pseudouridine-N3-)-methyltransferase RlmH ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AAEFMKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITL EIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQRSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEA YHK ; _entity_poly.pdbx_seq_one_letter_code_can ;AAEFMKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITL EIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQRSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEA YHK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ALA n 1 3 GLU n 1 4 PHE n 1 5 MET n 1 6 LYS n 1 7 ILE n 1 8 THR n 1 9 ILE n 1 10 LEU n 1 11 ALA n 1 12 VAL n 1 13 GLY n 1 14 LYS n 1 15 LEU n 1 16 LYS n 1 17 GLU n 1 18 LYS n 1 19 TYR n 1 20 TRP n 1 21 LYS n 1 22 GLN n 1 23 ALA n 1 24 ILE n 1 25 ALA n 1 26 GLU n 1 27 TYR n 1 28 GLU n 1 29 LYS n 1 30 ARG n 1 31 LEU n 1 32 GLY n 1 33 PRO n 1 34 TYR n 1 35 THR n 1 36 LYS n 1 37 ILE n 1 38 ASP n 1 39 ILE n 1 40 ILE n 1 41 GLU n 1 42 VAL n 1 43 PRO n 1 44 ASP n 1 45 GLU n 1 46 LYS n 1 47 ALA n 1 48 PRO n 1 49 GLU n 1 50 ASN n 1 51 MET n 1 52 SER n 1 53 ASP n 1 54 LYS n 1 55 GLU n 1 56 ILE n 1 57 GLU n 1 58 GLN n 1 59 VAL n 1 60 LYS n 1 61 GLU n 1 62 LYS n 1 63 GLU n 1 64 GLY n 1 65 GLN n 1 66 ARG n 1 67 ILE n 1 68 LEU n 1 69 ALA n 1 70 LYS n 1 71 ILE n 1 72 LYS n 1 73 PRO n 1 74 GLN n 1 75 SER n 1 76 THR n 1 77 VAL n 1 78 ILE n 1 79 THR n 1 80 LEU n 1 81 GLU n 1 82 ILE n 1 83 GLN n 1 84 GLY n 1 85 LYS n 1 86 MET n 1 87 LEU n 1 88 SER n 1 89 SER n 1 90 GLU n 1 91 GLY n 1 92 LEU n 1 93 ALA n 1 94 GLN n 1 95 GLU n 1 96 LEU n 1 97 ASN n 1 98 GLN n 1 99 ARG n 1 100 MET n 1 101 THR n 1 102 GLN n 1 103 GLY n 1 104 GLN n 1 105 SER n 1 106 ASP n 1 107 PHE n 1 108 VAL n 1 109 PHE n 1 110 VAL n 1 111 ILE n 1 112 GLY n 1 113 GLY n 1 114 SER n 1 115 ASN n 1 116 GLY n 1 117 LEU n 1 118 HIS n 1 119 LYS n 1 120 ASP n 1 121 VAL n 1 122 LEU n 1 123 GLN n 1 124 ARG n 1 125 SER n 1 126 ASN n 1 127 TYR n 1 128 ALA n 1 129 LEU n 1 130 SER n 1 131 PHE n 1 132 SER n 1 133 LYS n 1 134 MET n 1 135 THR n 1 136 PHE n 1 137 PRO n 1 138 HIS n 1 139 GLN n 1 140 MET n 1 141 MET n 1 142 ARG n 1 143 VAL n 1 144 VAL n 1 145 LEU n 1 146 ILE n 1 147 GLU n 1 148 GLN n 1 149 VAL n 1 150 TYR n 1 151 ARG n 1 152 ALA n 1 153 PHE n 1 154 LYS n 1 155 ILE n 1 156 MET n 1 157 ARG n 1 158 GLY n 1 159 GLU n 1 160 ALA n 1 161 TYR n 1 162 HIS n 1 163 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'orfx, rlmH' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain RN450M _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1280 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET30a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RLMH_STAAU _struct_ref.pdbx_db_accession P0C1V0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEIQG KMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQRSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYHK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4FAK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 163 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0C1V0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 159 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 159 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4FAK ALA A 1 ? UNP P0C1V0 ? ? 'expression tag' -3 1 1 4FAK ALA A 2 ? UNP P0C1V0 ? ? 'expression tag' -2 2 1 4FAK GLU A 3 ? UNP P0C1V0 ? ? 'expression tag' -1 3 1 4FAK PHE A 4 ? UNP P0C1V0 ? ? 'expression tag' 0 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SAM non-polymer . S-ADENOSYLMETHIONINE ? 'C15 H22 N6 O5 S' 398.437 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4FAK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_percent_sol 49.51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '20% PEG 550 MME, 5 mM ZnSO4, 0.1M Na 2-(N-morpholino) ethanesulfonate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2010-02-01 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 4FAK _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 28.6 _reflns.d_resolution_high 1.7 _reflns.number_obs 20528 _reflns.number_all 19664 _reflns.percent_possible_obs 95.8 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.5 _reflns.B_iso_Wilson_estimate 26.0 _reflns.pdbx_redundancy 8.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.7 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 93.8 _reflns_shell.Rmerge_I_obs 0.347 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.4 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1862 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4FAK _refine.ls_number_reflns_obs 19662 _refine.ls_number_reflns_all 19664 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1372577.11 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.43 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 95.6 _refine.ls_R_factor_obs 0.207 _refine.ls_R_factor_all 0.214 _refine.ls_R_factor_R_work 0.207 _refine.ls_R_factor_R_free 0.247 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1008 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 30.8 _refine.aniso_B[1][1] -2.15 _refine.aniso_B[2][2] 5.35 _refine.aniso_B[3][3] -3.20 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.355692 _refine.solvent_model_param_bsol 54.9051 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1VH0' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4FAK _refine_analyze.Luzzati_coordinate_error_obs 0.22 _refine_analyze.Luzzati_sigma_a_obs 0.34 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.28 _refine_analyze.Luzzati_sigma_a_free 0.38 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1314 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 45 _refine_hist.number_atoms_solvent 177 _refine_hist.number_atoms_total 1536 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 26.43 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d 0.018 ? ? ? ? 'X-RAY DIFFRACTION' c_bond_d_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_bond_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_d ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_d_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg 1.7 ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d 23.1 ? ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d 1.21 ? ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d_na ? ? ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d_prot ? ? ? ? ? 'X-RAY DIFFRACTION' c_mcbond_it 3.18 1.50 ? ? ? 'X-RAY DIFFRACTION' c_mcangle_it 3.87 2.00 ? ? ? 'X-RAY DIFFRACTION' c_scbond_it 5.16 2.00 ? ? ? 'X-RAY DIFFRACTION' c_scangle_it 6.93 2.50 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.dom_id 1 _refine_ls_restr_ncs.ncs_model_details NONE _refine_ls_restr_ncs.rms_dev_position ? _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso . _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_type . _refine_ls_restr_ncs.pdbx_auth_asym_id . _refine_ls_restr_ncs.pdbx_ens_id 1 _refine_ls_restr_ncs.pdbx_number ? _refine_ls_restr_ncs.pdbx_asym_id ? _refine_ls_restr_ncs.pdbx_rms ? _refine_ls_restr_ncs.pdbx_weight ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.76 _refine_ls_shell.number_reflns_R_work 1761 _refine_ls_shell.R_factor_R_work 0.366 _refine_ls_shell.percent_reflns_obs 93.7 _refine_ls_shell.R_factor_R_free 0.376 _refine_ls_shell.R_factor_R_free_error 0.038 _refine_ls_shell.percent_reflns_R_free 5.2 _refine_ls_shell.number_reflns_R_free 97 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct_ncs_dom.id 1 _struct_ncs_dom.details ? _struct_ncs_dom.pdbx_ens_id 1 # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 4FAK _struct.title 'Crystal Structure of OrfX in Complex with S-Adenosylmethionine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4FAK _struct_keywords.pdbx_keywords 'TRANSFERASE, RIBOSOMAL PROTEIN' _struct_keywords.text 'alpha/beta methyltransferase Rossmann fold, rRNA methylation, AdoMet, rRNA, TRANSFERASE, RIBOSOMAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 17 ? GLY A 32 ? GLU A 13 GLY A 28 1 ? 16 HELX_P HELX_P2 2 SER A 52 ? LYS A 70 ? SER A 48 LYS A 66 1 ? 19 HELX_P HELX_P3 3 SER A 88 ? GLN A 102 ? SER A 84 GLN A 98 1 ? 15 HELX_P HELX_P4 4 HIS A 118 ? SER A 125 ? HIS A 114 SER A 121 1 ? 8 HELX_P HELX_P5 5 PRO A 137 ? GLY A 158 ? PRO A 133 GLY A 154 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 36 ? VAL A 42 ? LYS A 32 VAL A 38 A 2 LYS A 6 ? VAL A 12 ? LYS A 2 VAL A 8 A 3 ASP A 106 ? ILE A 111 ? ASP A 102 ILE A 107 A 4 THR A 76 ? LEU A 80 ? THR A 72 LEU A 76 A 5 TYR A 127 ? SER A 130 ? TYR A 123 SER A 126 A 6 LYS A 85 ? MET A 86 ? LYS A 81 MET A 82 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 40 ? O ILE A 36 N ILE A 9 ? N ILE A 5 A 2 3 N THR A 8 ? N THR A 4 O PHE A 109 ? O PHE A 105 A 3 4 O VAL A 108 ? O VAL A 104 N ILE A 78 ? N ILE A 74 A 4 5 N THR A 79 ? N THR A 75 O LEU A 129 ? O LEU A 125 A 5 6 O SER A 130 ? O SER A 126 N LYS A 85 ? N LYS A 81 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SAM 201 ? 20 'BINDING SITE FOR RESIDUE SAM A 201' AC2 Software A PG4 202 ? 4 'BINDING SITE FOR RESIDUE PG4 A 202' AC3 Software A PO4 203 ? 7 'BINDING SITE FOR RESIDUE PO4 A 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 20 LEU A 80 ? LEU A 76 . ? 1_555 ? 2 AC1 20 GLU A 81 ? GLU A 77 . ? 1_555 ? 3 AC1 20 ILE A 82 ? ILE A 78 . ? 1_555 ? 4 AC1 20 ILE A 111 ? ILE A 107 . ? 1_555 ? 5 AC1 20 GLY A 112 ? GLY A 108 . ? 1_555 ? 6 AC1 20 GLY A 113 ? GLY A 109 . ? 1_555 ? 7 AC1 20 SER A 114 ? SER A 110 . ? 1_555 ? 8 AC1 20 GLY A 116 ? GLY A 112 . ? 1_555 ? 9 AC1 20 LEU A 129 ? LEU A 125 . ? 1_555 ? 10 AC1 20 PHE A 131 ? PHE A 127 . ? 1_555 ? 11 AC1 20 SER A 132 ? SER A 128 . ? 1_555 ? 12 AC1 20 MET A 134 ? MET A 130 . ? 1_555 ? 13 AC1 20 PHE A 136 ? PHE A 132 . ? 1_555 ? 14 AC1 20 MET A 141 ? MET A 137 . ? 1_555 ? 15 AC1 20 LYS A 163 ? LYS A 159 . ? 3_555 ? 16 AC1 20 PO4 D . ? PO4 A 203 . ? 1_555 ? 17 AC1 20 HOH E . ? HOH A 308 . ? 1_555 ? 18 AC1 20 HOH E . ? HOH A 322 . ? 1_555 ? 19 AC1 20 HOH E . ? HOH A 382 . ? 1_555 ? 20 AC1 20 HOH E . ? HOH A 462 . ? 1_555 ? 21 AC2 4 PRO A 73 ? PRO A 69 . ? 1_555 ? 22 AC2 4 GLN A 123 ? GLN A 119 . ? 1_555 ? 23 AC2 4 ARG A 124 ? ARG A 120 . ? 1_555 ? 24 AC2 4 ASN A 126 ? ASN A 122 . ? 1_555 ? 25 AC3 7 SER A 114 ? SER A 110 . ? 1_555 ? 26 AC3 7 PRO A 137 ? PRO A 133 . ? 1_555 ? 27 AC3 7 HIS A 138 ? HIS A 134 . ? 1_555 ? 28 AC3 7 LYS A 163 ? LYS A 159 . ? 3_555 ? 29 AC3 7 SAM B . ? SAM A 201 . ? 1_555 ? 30 AC3 7 HOH E . ? HOH A 398 . ? 3_555 ? 31 AC3 7 HOH E . ? HOH A 463 . ? 3_555 ? # _database_PDB_matrix.entry_id 4FAK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4FAK _atom_sites.fract_transf_matrix[1][1] 0.012853 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011864 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017944 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 -3 -3 ALA ALA A . n A 1 2 ALA 2 -2 -2 ALA ALA A . n A 1 3 GLU 3 -1 -1 GLU GLU A . n A 1 4 PHE 4 0 0 PHE PHE A . n A 1 5 MET 5 1 1 MET MET A . n A 1 6 LYS 6 2 2 LYS LYS A . n A 1 7 ILE 7 3 3 ILE ILE A . n A 1 8 THR 8 4 4 THR THR A . n A 1 9 ILE 9 5 5 ILE ILE A . n A 1 10 LEU 10 6 6 LEU LEU A . n A 1 11 ALA 11 7 7 ALA ALA A . n A 1 12 VAL 12 8 8 VAL VAL A . n A 1 13 GLY 13 9 9 GLY GLY A . n A 1 14 LYS 14 10 10 LYS LYS A . n A 1 15 LEU 15 11 11 LEU LEU A . n A 1 16 LYS 16 12 12 LYS LYS A . n A 1 17 GLU 17 13 13 GLU GLU A . n A 1 18 LYS 18 14 14 LYS LYS A . n A 1 19 TYR 19 15 15 TYR TYR A . n A 1 20 TRP 20 16 16 TRP TRP A . n A 1 21 LYS 21 17 17 LYS LYS A . n A 1 22 GLN 22 18 18 GLN GLN A . n A 1 23 ALA 23 19 19 ALA ALA A . n A 1 24 ILE 24 20 20 ILE ILE A . n A 1 25 ALA 25 21 21 ALA ALA A . n A 1 26 GLU 26 22 22 GLU GLU A . n A 1 27 TYR 27 23 23 TYR TYR A . n A 1 28 GLU 28 24 24 GLU GLU A . n A 1 29 LYS 29 25 25 LYS LYS A . n A 1 30 ARG 30 26 26 ARG ARG A . n A 1 31 LEU 31 27 27 LEU LEU A . n A 1 32 GLY 32 28 28 GLY GLY A . n A 1 33 PRO 33 29 29 PRO PRO A . n A 1 34 TYR 34 30 30 TYR TYR A . n A 1 35 THR 35 31 31 THR THR A . n A 1 36 LYS 36 32 32 LYS LYS A . n A 1 37 ILE 37 33 33 ILE ILE A . n A 1 38 ASP 38 34 34 ASP ASP A . n A 1 39 ILE 39 35 35 ILE ILE A . n A 1 40 ILE 40 36 36 ILE ILE A . n A 1 41 GLU 41 37 37 GLU GLU A . n A 1 42 VAL 42 38 38 VAL VAL A . n A 1 43 PRO 43 39 39 PRO PRO A . n A 1 44 ASP 44 40 40 ASP ASP A . n A 1 45 GLU 45 41 41 GLU GLU A . n A 1 46 LYS 46 42 42 LYS LYS A . n A 1 47 ALA 47 43 43 ALA ALA A . n A 1 48 PRO 48 44 44 PRO PRO A . n A 1 49 GLU 49 45 45 GLU GLU A . n A 1 50 ASN 50 46 46 ASN ASN A . n A 1 51 MET 51 47 47 MET MET A . n A 1 52 SER 52 48 48 SER SER A . n A 1 53 ASP 53 49 49 ASP ASP A . n A 1 54 LYS 54 50 50 LYS LYS A . n A 1 55 GLU 55 51 51 GLU GLU A . n A 1 56 ILE 56 52 52 ILE ILE A . n A 1 57 GLU 57 53 53 GLU GLU A . n A 1 58 GLN 58 54 54 GLN GLN A . n A 1 59 VAL 59 55 55 VAL VAL A . n A 1 60 LYS 60 56 56 LYS LYS A . n A 1 61 GLU 61 57 57 GLU GLU A . n A 1 62 LYS 62 58 58 LYS LYS A . n A 1 63 GLU 63 59 59 GLU GLU A . n A 1 64 GLY 64 60 60 GLY GLY A . n A 1 65 GLN 65 61 61 GLN GLN A . n A 1 66 ARG 66 62 62 ARG ARG A . n A 1 67 ILE 67 63 63 ILE ILE A . n A 1 68 LEU 68 64 64 LEU LEU A . n A 1 69 ALA 69 65 65 ALA ALA A . n A 1 70 LYS 70 66 66 LYS LYS A . n A 1 71 ILE 71 67 67 ILE ILE A . n A 1 72 LYS 72 68 68 LYS LYS A . n A 1 73 PRO 73 69 69 PRO PRO A . n A 1 74 GLN 74 70 70 GLN GLN A . n A 1 75 SER 75 71 71 SER SER A . n A 1 76 THR 76 72 72 THR THR A . n A 1 77 VAL 77 73 73 VAL VAL A . n A 1 78 ILE 78 74 74 ILE ILE A . n A 1 79 THR 79 75 75 THR THR A . n A 1 80 LEU 80 76 76 LEU LEU A . n A 1 81 GLU 81 77 77 GLU GLU A . n A 1 82 ILE 82 78 78 ILE ILE A . n A 1 83 GLN 83 79 79 GLN GLN A . n A 1 84 GLY 84 80 80 GLY GLY A . n A 1 85 LYS 85 81 81 LYS LYS A . n A 1 86 MET 86 82 82 MET MET A . n A 1 87 LEU 87 83 83 LEU LEU A . n A 1 88 SER 88 84 84 SER SER A . n A 1 89 SER 89 85 85 SER SER A . n A 1 90 GLU 90 86 86 GLU GLU A . n A 1 91 GLY 91 87 87 GLY GLY A . n A 1 92 LEU 92 88 88 LEU LEU A . n A 1 93 ALA 93 89 89 ALA ALA A . n A 1 94 GLN 94 90 90 GLN GLN A . n A 1 95 GLU 95 91 91 GLU GLU A . n A 1 96 LEU 96 92 92 LEU LEU A . n A 1 97 ASN 97 93 93 ASN ASN A . n A 1 98 GLN 98 94 94 GLN GLN A . n A 1 99 ARG 99 95 95 ARG ARG A . n A 1 100 MET 100 96 96 MET MET A . n A 1 101 THR 101 97 97 THR THR A . n A 1 102 GLN 102 98 98 GLN GLN A . n A 1 103 GLY 103 99 99 GLY GLY A . n A 1 104 GLN 104 100 100 GLN GLN A . n A 1 105 SER 105 101 101 SER SER A . n A 1 106 ASP 106 102 102 ASP ASP A . n A 1 107 PHE 107 103 103 PHE PHE A . n A 1 108 VAL 108 104 104 VAL VAL A . n A 1 109 PHE 109 105 105 PHE PHE A . n A 1 110 VAL 110 106 106 VAL VAL A . n A 1 111 ILE 111 107 107 ILE ILE A . n A 1 112 GLY 112 108 108 GLY GLY A . n A 1 113 GLY 113 109 109 GLY GLY A . n A 1 114 SER 114 110 110 SER SER A . n A 1 115 ASN 115 111 111 ASN ASN A . n A 1 116 GLY 116 112 112 GLY GLY A . n A 1 117 LEU 117 113 113 LEU LEU A . n A 1 118 HIS 118 114 114 HIS HIS A . n A 1 119 LYS 119 115 115 LYS LYS A . n A 1 120 ASP 120 116 116 ASP ASP A . n A 1 121 VAL 121 117 117 VAL VAL A . n A 1 122 LEU 122 118 118 LEU LEU A . n A 1 123 GLN 123 119 119 GLN GLN A . n A 1 124 ARG 124 120 120 ARG ARG A . n A 1 125 SER 125 121 121 SER SER A . n A 1 126 ASN 126 122 122 ASN ASN A . n A 1 127 TYR 127 123 123 TYR TYR A . n A 1 128 ALA 128 124 124 ALA ALA A . n A 1 129 LEU 129 125 125 LEU LEU A . n A 1 130 SER 130 126 126 SER SER A . n A 1 131 PHE 131 127 127 PHE PHE A . n A 1 132 SER 132 128 128 SER SER A . n A 1 133 LYS 133 129 129 LYS LYS A . n A 1 134 MET 134 130 130 MET MET A . n A 1 135 THR 135 131 131 THR THR A . n A 1 136 PHE 136 132 132 PHE PHE A . n A 1 137 PRO 137 133 133 PRO PRO A . n A 1 138 HIS 138 134 134 HIS HIS A . n A 1 139 GLN 139 135 135 GLN GLN A . n A 1 140 MET 140 136 136 MET MET A . n A 1 141 MET 141 137 137 MET MET A . n A 1 142 ARG 142 138 138 ARG ARG A . n A 1 143 VAL 143 139 139 VAL VAL A . n A 1 144 VAL 144 140 140 VAL VAL A . n A 1 145 LEU 145 141 141 LEU LEU A . n A 1 146 ILE 146 142 142 ILE ILE A . n A 1 147 GLU 147 143 143 GLU GLU A . n A 1 148 GLN 148 144 144 GLN GLN A . n A 1 149 VAL 149 145 145 VAL VAL A . n A 1 150 TYR 150 146 146 TYR TYR A . n A 1 151 ARG 151 147 147 ARG ARG A . n A 1 152 ALA 152 148 148 ALA ALA A . n A 1 153 PHE 153 149 149 PHE PHE A . n A 1 154 LYS 154 150 150 LYS LYS A . n A 1 155 ILE 155 151 151 ILE ILE A . n A 1 156 MET 156 152 152 MET MET A . n A 1 157 ARG 157 153 153 ARG ARG A . n A 1 158 GLY 158 154 154 GLY GLY A . n A 1 159 GLU 159 155 155 GLU GLU A . n A 1 160 ALA 160 156 156 ALA ALA A . n A 1 161 TYR 161 157 157 TYR TYR A . n A 1 162 HIS 162 158 158 HIS HIS A . n A 1 163 LYS 163 159 159 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM 1 201 1 SAM SAM A . C 3 PG4 1 202 3 PG4 TMP A . D 4 PO4 1 203 5 PO4 PO4 A . E 5 HOH 1 301 1 HOH HOH A . E 5 HOH 2 302 2 HOH HOH A . E 5 HOH 3 303 3 HOH HOH A . E 5 HOH 4 304 4 HOH HOH A . E 5 HOH 5 305 5 HOH HOH A . E 5 HOH 6 306 6 HOH HOH A . E 5 HOH 7 307 7 HOH HOH A . E 5 HOH 8 308 8 HOH HOH A . E 5 HOH 9 309 9 HOH HOH A . E 5 HOH 10 310 10 HOH HOH A . E 5 HOH 11 311 11 HOH HOH A . E 5 HOH 12 312 12 HOH HOH A . E 5 HOH 13 313 13 HOH HOH A . E 5 HOH 14 314 14 HOH HOH A . E 5 HOH 15 315 15 HOH HOH A . E 5 HOH 16 316 16 HOH HOH A . E 5 HOH 17 317 17 HOH HOH A . E 5 HOH 18 318 18 HOH HOH A . E 5 HOH 19 319 19 HOH HOH A . E 5 HOH 20 320 20 HOH HOH A . E 5 HOH 21 321 21 HOH HOH A . E 5 HOH 22 322 22 HOH HOH A . E 5 HOH 23 323 23 HOH HOH A . E 5 HOH 24 324 24 HOH HOH A . E 5 HOH 25 325 25 HOH HOH A . E 5 HOH 26 326 26 HOH HOH A . E 5 HOH 27 327 27 HOH HOH A . E 5 HOH 28 328 28 HOH HOH A . E 5 HOH 29 329 29 HOH HOH A . E 5 HOH 30 330 30 HOH HOH A . E 5 HOH 31 331 31 HOH HOH A . E 5 HOH 32 332 32 HOH HOH A . E 5 HOH 33 333 33 HOH HOH A . E 5 HOH 34 334 34 HOH HOH A . E 5 HOH 35 335 35 HOH HOH A . E 5 HOH 36 336 36 HOH HOH A . E 5 HOH 37 337 37 HOH HOH A . E 5 HOH 38 338 38 HOH HOH A . E 5 HOH 39 339 39 HOH HOH A . E 5 HOH 40 340 40 HOH HOH A . E 5 HOH 41 341 41 HOH HOH A . E 5 HOH 42 342 42 HOH HOH A . E 5 HOH 43 343 43 HOH HOH A . E 5 HOH 44 344 44 HOH HOH A . E 5 HOH 45 345 45 HOH HOH A . E 5 HOH 46 346 46 HOH HOH A . E 5 HOH 47 347 47 HOH HOH A . E 5 HOH 48 348 48 HOH HOH A . E 5 HOH 49 349 49 HOH HOH A . E 5 HOH 50 350 50 HOH HOH A . E 5 HOH 51 351 51 HOH HOH A . E 5 HOH 52 352 52 HOH HOH A . E 5 HOH 53 353 53 HOH HOH A . E 5 HOH 54 354 54 HOH HOH A . E 5 HOH 55 355 55 HOH HOH A . E 5 HOH 56 356 56 HOH HOH A . E 5 HOH 57 357 57 HOH HOH A . E 5 HOH 58 358 58 HOH HOH A . E 5 HOH 59 359 59 HOH HOH A . E 5 HOH 60 360 60 HOH HOH A . E 5 HOH 61 361 61 HOH HOH A . E 5 HOH 62 362 62 HOH HOH A . E 5 HOH 63 363 63 HOH HOH A . E 5 HOH 64 364 64 HOH HOH A . E 5 HOH 65 365 65 HOH HOH A . E 5 HOH 66 366 66 HOH HOH A . E 5 HOH 67 367 67 HOH HOH A . E 5 HOH 68 368 68 HOH HOH A . E 5 HOH 69 369 69 HOH HOH A . E 5 HOH 70 370 70 HOH HOH A . E 5 HOH 71 371 71 HOH HOH A . E 5 HOH 72 372 72 HOH HOH A . E 5 HOH 73 373 73 HOH HOH A . E 5 HOH 74 374 74 HOH HOH A . E 5 HOH 75 375 75 HOH HOH A . E 5 HOH 76 376 76 HOH HOH A . E 5 HOH 77 377 77 HOH HOH A . E 5 HOH 78 378 78 HOH HOH A . E 5 HOH 79 379 79 HOH HOH A . E 5 HOH 80 380 80 HOH HOH A . E 5 HOH 81 381 81 HOH HOH A . E 5 HOH 82 382 82 HOH HOH A . E 5 HOH 83 383 83 HOH HOH A . E 5 HOH 84 384 84 HOH HOH A . E 5 HOH 85 385 85 HOH HOH A . E 5 HOH 86 386 86 HOH HOH A . E 5 HOH 87 387 87 HOH HOH A . E 5 HOH 88 388 88 HOH HOH A . E 5 HOH 89 389 89 HOH HOH A . E 5 HOH 90 390 90 HOH HOH A . E 5 HOH 91 391 91 HOH HOH A . E 5 HOH 92 392 92 HOH HOH A . E 5 HOH 93 393 93 HOH HOH A . E 5 HOH 94 394 94 HOH HOH A . E 5 HOH 95 395 95 HOH HOH A . E 5 HOH 96 396 96 HOH HOH A . E 5 HOH 97 397 97 HOH HOH A . E 5 HOH 98 398 98 HOH HOH A . E 5 HOH 99 399 99 HOH HOH A . E 5 HOH 100 400 100 HOH HOH A . E 5 HOH 101 401 101 HOH HOH A . E 5 HOH 102 402 102 HOH HOH A . E 5 HOH 103 403 103 HOH HOH A . E 5 HOH 104 404 104 HOH HOH A . E 5 HOH 105 405 105 HOH HOH A . E 5 HOH 106 406 106 HOH HOH A . E 5 HOH 107 407 107 HOH HOH A . E 5 HOH 108 408 108 HOH HOH A . E 5 HOH 109 409 109 HOH HOH A . E 5 HOH 110 410 110 HOH HOH A . E 5 HOH 111 411 111 HOH HOH A . E 5 HOH 112 412 112 HOH HOH A . E 5 HOH 113 413 113 HOH HOH A . E 5 HOH 114 414 114 HOH HOH A . E 5 HOH 115 415 115 HOH HOH A . E 5 HOH 116 416 116 HOH HOH A . E 5 HOH 117 417 117 HOH HOH A . E 5 HOH 118 418 118 HOH HOH A . E 5 HOH 119 419 119 HOH HOH A . E 5 HOH 120 420 120 HOH HOH A . E 5 HOH 121 421 121 HOH HOH A . E 5 HOH 122 422 122 HOH HOH A . E 5 HOH 123 423 123 HOH HOH A . E 5 HOH 124 424 124 HOH HOH A . E 5 HOH 125 425 125 HOH HOH A . E 5 HOH 126 426 126 HOH HOH A . E 5 HOH 127 427 127 HOH HOH A . E 5 HOH 128 428 128 HOH HOH A . E 5 HOH 129 429 129 HOH HOH A . E 5 HOH 130 430 130 HOH HOH A . E 5 HOH 131 431 131 HOH HOH A . E 5 HOH 132 432 132 HOH HOH A . E 5 HOH 133 433 133 HOH HOH A . E 5 HOH 134 434 134 HOH HOH A . E 5 HOH 135 435 135 HOH HOH A . E 5 HOH 136 436 136 HOH HOH A . E 5 HOH 137 437 137 HOH HOH A . E 5 HOH 138 438 138 HOH HOH A . E 5 HOH 139 439 139 HOH HOH A . E 5 HOH 140 440 140 HOH HOH A . E 5 HOH 141 441 141 HOH HOH A . E 5 HOH 142 442 142 HOH HOH A . E 5 HOH 143 443 143 HOH HOH A . E 5 HOH 144 444 144 HOH HOH A . E 5 HOH 145 445 145 HOH HOH A . E 5 HOH 146 446 146 HOH HOH A . E 5 HOH 147 447 147 HOH HOH A . E 5 HOH 148 448 148 HOH HOH A . E 5 HOH 149 449 149 HOH HOH A . E 5 HOH 150 450 150 HOH HOH A . E 5 HOH 151 451 151 HOH HOH A . E 5 HOH 152 452 152 HOH HOH A . E 5 HOH 153 453 153 HOH HOH A . E 5 HOH 154 454 154 HOH HOH A . E 5 HOH 155 455 155 HOH HOH A . E 5 HOH 156 456 156 HOH HOH A . E 5 HOH 157 457 157 HOH HOH A . E 5 HOH 158 458 158 HOH HOH A . E 5 HOH 159 459 159 HOH HOH A . E 5 HOH 160 460 160 HOH HOH A . E 5 HOH 161 461 161 HOH HOH A . E 5 HOH 162 462 162 HOH HOH A . E 5 HOH 163 463 163 HOH HOH A . E 5 HOH 164 464 164 HOH HOH A . E 5 HOH 165 465 165 HOH HOH A . E 5 HOH 166 466 166 HOH HOH A . E 5 HOH 167 467 167 HOH HOH A . E 5 HOH 168 468 168 HOH HOH A . E 5 HOH 169 469 169 HOH HOH A . E 5 HOH 170 470 170 HOH HOH A . E 5 HOH 171 471 171 HOH HOH A . E 5 HOH 172 472 172 HOH HOH A . E 5 HOH 173 473 173 HOH HOH A . E 5 HOH 174 474 174 HOH HOH A . E 5 HOH 175 475 175 HOH HOH A . E 5 HOH 176 476 176 HOH HOH A . E 5 HOH 177 477 177 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2990 ? 1 MORE -23 ? 1 'SSA (A^2)' 16160 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 27.8650000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 301 ? E HOH . 2 1 A HOH 302 ? E HOH . 3 1 A HOH 426 ? E HOH . 4 1 A HOH 446 ? E HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-06 2 'Structure model' 1 1 2013-01-30 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 PHASER phasing . ? 2 CNS refinement 1.0 ? 3 CrystalClear 'data reduction' . ? 4 CrystalClear 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 360 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 403 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 128 ? ? 171.59 162.33 2 1 TYR A 157 ? ? 160.60 -42.38 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PG4 O1 O N N 236 PG4 C1 C N N 237 PG4 C2 C N N 238 PG4 O2 O N N 239 PG4 C3 C N N 240 PG4 C4 C N N 241 PG4 O3 O N N 242 PG4 C5 C N N 243 PG4 C6 C N N 244 PG4 O4 O N N 245 PG4 C7 C N N 246 PG4 C8 C N N 247 PG4 O5 O N N 248 PG4 HO1 H N N 249 PG4 H11 H N N 250 PG4 H12 H N N 251 PG4 H21 H N N 252 PG4 H22 H N N 253 PG4 H31 H N N 254 PG4 H32 H N N 255 PG4 H41 H N N 256 PG4 H42 H N N 257 PG4 H51 H N N 258 PG4 H52 H N N 259 PG4 H61 H N N 260 PG4 H62 H N N 261 PG4 H71 H N N 262 PG4 H72 H N N 263 PG4 H81 H N N 264 PG4 H82 H N N 265 PG4 HO5 H N N 266 PHE N N N N 267 PHE CA C N S 268 PHE C C N N 269 PHE O O N N 270 PHE CB C N N 271 PHE CG C Y N 272 PHE CD1 C Y N 273 PHE CD2 C Y N 274 PHE CE1 C Y N 275 PHE CE2 C Y N 276 PHE CZ C Y N 277 PHE OXT O N N 278 PHE H H N N 279 PHE H2 H N N 280 PHE HA H N N 281 PHE HB2 H N N 282 PHE HB3 H N N 283 PHE HD1 H N N 284 PHE HD2 H N N 285 PHE HE1 H N N 286 PHE HE2 H N N 287 PHE HZ H N N 288 PHE HXT H N N 289 PO4 P P N N 290 PO4 O1 O N N 291 PO4 O2 O N N 292 PO4 O3 O N N 293 PO4 O4 O N N 294 PRO N N N N 295 PRO CA C N S 296 PRO C C N N 297 PRO O O N N 298 PRO CB C N N 299 PRO CG C N N 300 PRO CD C N N 301 PRO OXT O N N 302 PRO H H N N 303 PRO HA H N N 304 PRO HB2 H N N 305 PRO HB3 H N N 306 PRO HG2 H N N 307 PRO HG3 H N N 308 PRO HD2 H N N 309 PRO HD3 H N N 310 PRO HXT H N N 311 SAM N N N N 312 SAM CA C N S 313 SAM C C N N 314 SAM O O N N 315 SAM OXT O N N 316 SAM CB C N N 317 SAM CG C N N 318 SAM SD S N S 319 SAM CE C N N 320 SAM "C5'" C N N 321 SAM "C4'" C N S 322 SAM "O4'" O N N 323 SAM "C3'" C N S 324 SAM "O3'" O N N 325 SAM "C2'" C N R 326 SAM "O2'" O N N 327 SAM "C1'" C N R 328 SAM N9 N Y N 329 SAM C8 C Y N 330 SAM N7 N Y N 331 SAM C5 C Y N 332 SAM C6 C Y N 333 SAM N6 N N N 334 SAM N1 N Y N 335 SAM C2 C Y N 336 SAM N3 N Y N 337 SAM C4 C Y N 338 SAM HN1 H N N 339 SAM HN2 H N N 340 SAM HA H N N 341 SAM HB1 H N N 342 SAM HB2 H N N 343 SAM HG1 H N N 344 SAM HG2 H N N 345 SAM HE1 H N N 346 SAM HE2 H N N 347 SAM HE3 H N N 348 SAM "H5'1" H N N 349 SAM "H5'2" H N N 350 SAM "H4'" H N N 351 SAM "H3'" H N N 352 SAM "HO3'" H N N 353 SAM "H2'" H N N 354 SAM "HO2'" H N N 355 SAM "H1'" H N N 356 SAM H8 H N N 357 SAM HN61 H N N 358 SAM HN62 H N N 359 SAM H2 H N N 360 SER N N N N 361 SER CA C N S 362 SER C C N N 363 SER O O N N 364 SER CB C N N 365 SER OG O N N 366 SER OXT O N N 367 SER H H N N 368 SER H2 H N N 369 SER HA H N N 370 SER HB2 H N N 371 SER HB3 H N N 372 SER HG H N N 373 SER HXT H N N 374 THR N N N N 375 THR CA C N S 376 THR C C N N 377 THR O O N N 378 THR CB C N R 379 THR OG1 O N N 380 THR CG2 C N N 381 THR OXT O N N 382 THR H H N N 383 THR H2 H N N 384 THR HA H N N 385 THR HB H N N 386 THR HG1 H N N 387 THR HG21 H N N 388 THR HG22 H N N 389 THR HG23 H N N 390 THR HXT H N N 391 TRP N N N N 392 TRP CA C N S 393 TRP C C N N 394 TRP O O N N 395 TRP CB C N N 396 TRP CG C Y N 397 TRP CD1 C Y N 398 TRP CD2 C Y N 399 TRP NE1 N Y N 400 TRP CE2 C Y N 401 TRP CE3 C Y N 402 TRP CZ2 C Y N 403 TRP CZ3 C Y N 404 TRP CH2 C Y N 405 TRP OXT O N N 406 TRP H H N N 407 TRP H2 H N N 408 TRP HA H N N 409 TRP HB2 H N N 410 TRP HB3 H N N 411 TRP HD1 H N N 412 TRP HE1 H N N 413 TRP HE3 H N N 414 TRP HZ2 H N N 415 TRP HZ3 H N N 416 TRP HH2 H N N 417 TRP HXT H N N 418 TYR N N N N 419 TYR CA C N S 420 TYR C C N N 421 TYR O O N N 422 TYR CB C N N 423 TYR CG C Y N 424 TYR CD1 C Y N 425 TYR CD2 C Y N 426 TYR CE1 C Y N 427 TYR CE2 C Y N 428 TYR CZ C Y N 429 TYR OH O N N 430 TYR OXT O N N 431 TYR H H N N 432 TYR H2 H N N 433 TYR HA H N N 434 TYR HB2 H N N 435 TYR HB3 H N N 436 TYR HD1 H N N 437 TYR HD2 H N N 438 TYR HE1 H N N 439 TYR HE2 H N N 440 TYR HH H N N 441 TYR HXT H N N 442 VAL N N N N 443 VAL CA C N S 444 VAL C C N N 445 VAL O O N N 446 VAL CB C N N 447 VAL CG1 C N N 448 VAL CG2 C N N 449 VAL OXT O N N 450 VAL H H N N 451 VAL H2 H N N 452 VAL HA H N N 453 VAL HB H N N 454 VAL HG11 H N N 455 VAL HG12 H N N 456 VAL HG13 H N N 457 VAL HG21 H N N 458 VAL HG22 H N N 459 VAL HG23 H N N 460 VAL HXT H N N 461 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PG4 O1 C1 sing N N 224 PG4 O1 HO1 sing N N 225 PG4 C1 C2 sing N N 226 PG4 C1 H11 sing N N 227 PG4 C1 H12 sing N N 228 PG4 C2 O2 sing N N 229 PG4 C2 H21 sing N N 230 PG4 C2 H22 sing N N 231 PG4 O2 C3 sing N N 232 PG4 C3 C4 sing N N 233 PG4 C3 H31 sing N N 234 PG4 C3 H32 sing N N 235 PG4 C4 O3 sing N N 236 PG4 C4 H41 sing N N 237 PG4 C4 H42 sing N N 238 PG4 O3 C5 sing N N 239 PG4 C5 C6 sing N N 240 PG4 C5 H51 sing N N 241 PG4 C5 H52 sing N N 242 PG4 C6 O4 sing N N 243 PG4 C6 H61 sing N N 244 PG4 C6 H62 sing N N 245 PG4 O4 C7 sing N N 246 PG4 C7 C8 sing N N 247 PG4 C7 H71 sing N N 248 PG4 C7 H72 sing N N 249 PG4 C8 O5 sing N N 250 PG4 C8 H81 sing N N 251 PG4 C8 H82 sing N N 252 PG4 O5 HO5 sing N N 253 PHE N CA sing N N 254 PHE N H sing N N 255 PHE N H2 sing N N 256 PHE CA C sing N N 257 PHE CA CB sing N N 258 PHE CA HA sing N N 259 PHE C O doub N N 260 PHE C OXT sing N N 261 PHE CB CG sing N N 262 PHE CB HB2 sing N N 263 PHE CB HB3 sing N N 264 PHE CG CD1 doub Y N 265 PHE CG CD2 sing Y N 266 PHE CD1 CE1 sing Y N 267 PHE CD1 HD1 sing N N 268 PHE CD2 CE2 doub Y N 269 PHE CD2 HD2 sing N N 270 PHE CE1 CZ doub Y N 271 PHE CE1 HE1 sing N N 272 PHE CE2 CZ sing Y N 273 PHE CE2 HE2 sing N N 274 PHE CZ HZ sing N N 275 PHE OXT HXT sing N N 276 PO4 P O1 doub N N 277 PO4 P O2 sing N N 278 PO4 P O3 sing N N 279 PO4 P O4 sing N N 280 PRO N CA sing N N 281 PRO N CD sing N N 282 PRO N H sing N N 283 PRO CA C sing N N 284 PRO CA CB sing N N 285 PRO CA HA sing N N 286 PRO C O doub N N 287 PRO C OXT sing N N 288 PRO CB CG sing N N 289 PRO CB HB2 sing N N 290 PRO CB HB3 sing N N 291 PRO CG CD sing N N 292 PRO CG HG2 sing N N 293 PRO CG HG3 sing N N 294 PRO CD HD2 sing N N 295 PRO CD HD3 sing N N 296 PRO OXT HXT sing N N 297 SAM N CA sing N N 298 SAM N HN1 sing N N 299 SAM N HN2 sing N N 300 SAM CA C sing N N 301 SAM CA CB sing N N 302 SAM CA HA sing N N 303 SAM C O doub N N 304 SAM C OXT sing N N 305 SAM CB CG sing N N 306 SAM CB HB1 sing N N 307 SAM CB HB2 sing N N 308 SAM CG SD sing N N 309 SAM CG HG1 sing N N 310 SAM CG HG2 sing N N 311 SAM SD CE sing N N 312 SAM SD "C5'" sing N N 313 SAM CE HE1 sing N N 314 SAM CE HE2 sing N N 315 SAM CE HE3 sing N N 316 SAM "C5'" "C4'" sing N N 317 SAM "C5'" "H5'1" sing N N 318 SAM "C5'" "H5'2" sing N N 319 SAM "C4'" "O4'" sing N N 320 SAM "C4'" "C3'" sing N N 321 SAM "C4'" "H4'" sing N N 322 SAM "O4'" "C1'" sing N N 323 SAM "C3'" "O3'" sing N N 324 SAM "C3'" "C2'" sing N N 325 SAM "C3'" "H3'" sing N N 326 SAM "O3'" "HO3'" sing N N 327 SAM "C2'" "O2'" sing N N 328 SAM "C2'" "C1'" sing N N 329 SAM "C2'" "H2'" sing N N 330 SAM "O2'" "HO2'" sing N N 331 SAM "C1'" N9 sing N N 332 SAM "C1'" "H1'" sing N N 333 SAM N9 C8 sing Y N 334 SAM N9 C4 sing Y N 335 SAM C8 N7 doub Y N 336 SAM C8 H8 sing N N 337 SAM N7 C5 sing Y N 338 SAM C5 C6 sing Y N 339 SAM C5 C4 doub Y N 340 SAM C6 N6 sing N N 341 SAM C6 N1 doub Y N 342 SAM N6 HN61 sing N N 343 SAM N6 HN62 sing N N 344 SAM N1 C2 sing Y N 345 SAM C2 N3 doub Y N 346 SAM C2 H2 sing N N 347 SAM N3 C4 sing Y N 348 SER N CA sing N N 349 SER N H sing N N 350 SER N H2 sing N N 351 SER CA C sing N N 352 SER CA CB sing N N 353 SER CA HA sing N N 354 SER C O doub N N 355 SER C OXT sing N N 356 SER CB OG sing N N 357 SER CB HB2 sing N N 358 SER CB HB3 sing N N 359 SER OG HG sing N N 360 SER OXT HXT sing N N 361 THR N CA sing N N 362 THR N H sing N N 363 THR N H2 sing N N 364 THR CA C sing N N 365 THR CA CB sing N N 366 THR CA HA sing N N 367 THR C O doub N N 368 THR C OXT sing N N 369 THR CB OG1 sing N N 370 THR CB CG2 sing N N 371 THR CB HB sing N N 372 THR OG1 HG1 sing N N 373 THR CG2 HG21 sing N N 374 THR CG2 HG22 sing N N 375 THR CG2 HG23 sing N N 376 THR OXT HXT sing N N 377 TRP N CA sing N N 378 TRP N H sing N N 379 TRP N H2 sing N N 380 TRP CA C sing N N 381 TRP CA CB sing N N 382 TRP CA HA sing N N 383 TRP C O doub N N 384 TRP C OXT sing N N 385 TRP CB CG sing N N 386 TRP CB HB2 sing N N 387 TRP CB HB3 sing N N 388 TRP CG CD1 doub Y N 389 TRP CG CD2 sing Y N 390 TRP CD1 NE1 sing Y N 391 TRP CD1 HD1 sing N N 392 TRP CD2 CE2 doub Y N 393 TRP CD2 CE3 sing Y N 394 TRP NE1 CE2 sing Y N 395 TRP NE1 HE1 sing N N 396 TRP CE2 CZ2 sing Y N 397 TRP CE3 CZ3 doub Y N 398 TRP CE3 HE3 sing N N 399 TRP CZ2 CH2 doub Y N 400 TRP CZ2 HZ2 sing N N 401 TRP CZ3 CH2 sing Y N 402 TRP CZ3 HZ3 sing N N 403 TRP CH2 HH2 sing N N 404 TRP OXT HXT sing N N 405 TYR N CA sing N N 406 TYR N H sing N N 407 TYR N H2 sing N N 408 TYR CA C sing N N 409 TYR CA CB sing N N 410 TYR CA HA sing N N 411 TYR C O doub N N 412 TYR C OXT sing N N 413 TYR CB CG sing N N 414 TYR CB HB2 sing N N 415 TYR CB HB3 sing N N 416 TYR CG CD1 doub Y N 417 TYR CG CD2 sing Y N 418 TYR CD1 CE1 sing Y N 419 TYR CD1 HD1 sing N N 420 TYR CD2 CE2 doub Y N 421 TYR CD2 HD2 sing N N 422 TYR CE1 CZ doub Y N 423 TYR CE1 HE1 sing N N 424 TYR CE2 CZ sing Y N 425 TYR CE2 HE2 sing N N 426 TYR CZ OH sing N N 427 TYR OH HH sing N N 428 TYR OXT HXT sing N N 429 VAL N CA sing N N 430 VAL N H sing N N 431 VAL N H2 sing N N 432 VAL CA C sing N N 433 VAL CA CB sing N N 434 VAL CA HA sing N N 435 VAL C O doub N N 436 VAL C OXT sing N N 437 VAL CB CG1 sing N N 438 VAL CB CG2 sing N N 439 VAL CB HB sing N N 440 VAL CG1 HG11 sing N N 441 VAL CG1 HG12 sing N N 442 VAL CG1 HG13 sing N N 443 VAL CG2 HG21 sing N N 444 VAL CG2 HG22 sing N N 445 VAL CG2 HG23 sing N N 446 VAL OXT HXT sing N N 447 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 S-ADENOSYLMETHIONINE SAM 3 'TETRAETHYLENE GLYCOL' PG4 4 'PHOSPHATE ION' PO4 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1VH0 _pdbx_initial_refinement_model.details 'PDB ENTRY 1VH0' #