HEADER DNA BINDING PROTEIN/DNA 22-MAY-12 4FB3 TITLE POLYOMAVIRUS T-AG BINDS SYMMETRICAL REPEATS AT THE VIRAL ORIGIN IN AN TITLE 2 ASYMMETRICAL MANNER COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORI DNA OLIGONUCLEOTIDE-CRICK STRAND; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ORI DNA OLIGONUCLEOTIDE-WATSON STRAND; COMPND 7 CHAIN: W; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: LARGE T ANTIGEN; COMPND 11 CHAIN: A, B, E; COMPND 12 FRAGMENT: ORIGIN BINDING DOMAIN, UNP RESIDUES 290-420; COMPND 13 SYNONYM: LT, LT-AG; COMPND 14 EC: 3.6.4.-; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHETIC; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: SYNTHETIC; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: MOUSE POLYOMAVIRUS; SOURCE 9 ORGANISM_COMMON: MPYV; SOURCE 10 ORGANISM_TAXID: 10634; SOURCE 11 GENE: LARGE T-ANTIGEN; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS ORIGIN BINDING DOMAIN, PROTEIN-DNA COMPLEX, REPLICATION, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.BOHM,C.J.HARRISON,B.S.SCHAFFHAUSEN,T.JIANG REVDAT 3 28-FEB-24 4FB3 1 SEQADV REVDAT 2 04-DEC-13 4FB3 1 JRNL REVDAT 1 23-OCT-13 4FB3 0 JRNL AUTH C.HARRISON,T.JIANG,P.BANERJEE,G.MEINKE,C.M.D'ABRAMO, JRNL AUTH 2 B.SCHAFFHAUSEN,A.BOHM JRNL TITL POLYOMAVIRUS LARGE T ANTIGEN BINDS SYMMETRICAL REPEATS AT JRNL TITL 2 THE VIRAL ORIGIN IN AN ASYMMETRICAL MANNER. JRNL REF J.VIROL. V. 87 13751 2013 JRNL REFN ISSN 0022-538X JRNL PMID 24109229 JRNL DOI 10.1128/JVI.01740-13 REMARK 2 REMARK 2 RESOLUTION. 3.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9344 - 6.0131 1.00 2733 148 0.2200 0.2357 REMARK 3 2 6.0131 - 4.7743 1.00 2624 139 0.1984 0.2365 REMARK 3 3 4.7743 - 4.1712 1.00 2615 122 0.2081 0.2232 REMARK 3 4 4.1712 - 3.7900 1.00 2579 120 0.2810 0.3136 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.11 REMARK 3 K_SOL : 0.29 REMARK 3 B_SOL : 38.57 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.890 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 23.88960 REMARK 3 B22 (A**2) : -7.11070 REMARK 3 B33 (A**2) : -16.77890 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3993 REMARK 3 ANGLE : 1.035 5612 REMARK 3 CHIRALITY : 0.061 624 REMARK 3 PLANARITY : 0.006 518 REMARK 3 DIHEDRAL : 21.759 1546 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9371 114.6010 -9.6727 REMARK 3 T TENSOR REMARK 3 T11: 0.7066 T22: 0.6865 REMARK 3 T33: 0.7055 T12: 0.0967 REMARK 3 T13: -0.0179 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 6.4070 L22: 2.5401 REMARK 3 L33: 3.8843 L12: 0.6778 REMARK 3 L13: -1.3288 L23: 0.2224 REMARK 3 S TENSOR REMARK 3 S11: 0.2055 S12: -0.2263 S13: 0.0282 REMARK 3 S21: 0.4055 S22: -0.1667 S23: -0.4006 REMARK 3 S31: 0.0738 S32: 0.5090 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9959 77.4075 -18.1851 REMARK 3 T TENSOR REMARK 3 T11: 0.7638 T22: 0.6417 REMARK 3 T33: 0.6900 T12: -0.0418 REMARK 3 T13: 0.0313 T23: -0.0454 REMARK 3 L TENSOR REMARK 3 L11: 4.8366 L22: 3.4522 REMARK 3 L33: 2.2714 L12: -0.5066 REMARK 3 L13: 0.5897 L23: -0.2671 REMARK 3 S TENSOR REMARK 3 S11: -0.0672 S12: -0.0346 S13: 0.0829 REMARK 3 S21: -0.5713 S22: 0.1503 S23: -0.3281 REMARK 3 S31: 0.0891 S32: 0.1009 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN E) REMARK 3 ORIGIN FOR THE GROUP (A): -52.7370 138.0149 0.7183 REMARK 3 T TENSOR REMARK 3 T11: 0.7045 T22: 0.6704 REMARK 3 T33: 0.7420 T12: 0.1762 REMARK 3 T13: -0.0526 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 4.2269 L22: 4.5626 REMARK 3 L33: 7.2176 L12: -1.5849 REMARK 3 L13: -1.9674 L23: 0.1162 REMARK 3 S TENSOR REMARK 3 S11: -0.1386 S12: 0.0524 S13: -0.2659 REMARK 3 S21: -0.3853 S22: 0.0815 S23: 0.2084 REMARK 3 S31: -0.0843 S32: -0.3358 S33: 0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN C) REMARK 3 ORIGIN FOR THE GROUP (A): -36.1699 108.9848 -15.0995 REMARK 3 T TENSOR REMARK 3 T11: 0.8336 T22: 1.0864 REMARK 3 T33: 1.0285 T12: 0.1504 REMARK 3 T13: 0.0774 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.6526 L22: 1.3004 REMARK 3 L33: 1.2489 L12: -0.6592 REMARK 3 L13: 0.2450 L23: 1.9063 REMARK 3 S TENSOR REMARK 3 S11: 0.2539 S12: 0.3315 S13: -0.1043 REMARK 3 S21: 0.3556 S22: -0.2666 S23: 0.6236 REMARK 3 S31: 0.0404 S32: -0.2963 S33: -0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN W) REMARK 3 ORIGIN FOR THE GROUP (A): -37.2462 112.2153 -14.0229 REMARK 3 T TENSOR REMARK 3 T11: 0.9941 T22: 1.0808 REMARK 3 T33: 0.8857 T12: 0.0854 REMARK 3 T13: 0.0283 T23: -0.1228 REMARK 3 L TENSOR REMARK 3 L11: 1.4689 L22: 0.0973 REMARK 3 L33: 1.0487 L12: -0.9128 REMARK 3 L13: -0.6173 L23: 0.5083 REMARK 3 S TENSOR REMARK 3 S11: 0.2379 S12: 0.2808 S13: -0.1298 REMARK 3 S21: -0.0689 S22: -0.4559 S23: -0.0492 REMARK 3 S31: -0.2330 S32: -0.3874 S33: -0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FB3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11084 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.790 REMARK 200 RESOLUTION RANGE LOW (A) : 117.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 3350, 140 MM SODIUM CITRATE, REMARK 280 PH 7.1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.86400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.86400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 82.57500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 83.96100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 82.57500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 83.96100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.86400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 82.57500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 83.96100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.86400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 82.57500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 83.96100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, W, A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 283 REMARK 465 HIS A 284 REMARK 465 HIS A 285 REMARK 465 HIS A 286 REMARK 465 HIS A 287 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 HIS A 405 REMARK 465 GLN A 406 REMARK 465 PHE A 407 REMARK 465 GLU A 408 REMARK 465 PHE A 409 REMARK 465 THR A 410 REMARK 465 ASP A 411 REMARK 465 GLU A 412 REMARK 465 PRO A 413 REMARK 465 GLU A 414 REMARK 465 GLU A 415 REMARK 465 GLN A 416 REMARK 465 LYS A 417 REMARK 465 ALA A 418 REMARK 465 VAL A 419 REMARK 465 ASP A 420 REMARK 465 GLY A 421 REMARK 465 SER A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 HIS A 427 REMARK 465 HIS A 428 REMARK 465 MET B 283 REMARK 465 HIS B 284 REMARK 465 HIS B 285 REMARK 465 HIS B 286 REMARK 465 HIS B 287 REMARK 465 HIS B 288 REMARK 465 HIS B 289 REMARK 465 LEU B 404 REMARK 465 HIS B 405 REMARK 465 GLN B 406 REMARK 465 PHE B 407 REMARK 465 GLU B 408 REMARK 465 PHE B 409 REMARK 465 THR B 410 REMARK 465 ASP B 411 REMARK 465 GLU B 412 REMARK 465 PRO B 413 REMARK 465 GLU B 414 REMARK 465 GLU B 415 REMARK 465 GLN B 416 REMARK 465 LYS B 417 REMARK 465 ALA B 418 REMARK 465 VAL B 419 REMARK 465 ASP B 420 REMARK 465 GLY B 421 REMARK 465 SER B 422 REMARK 465 HIS B 423 REMARK 465 HIS B 424 REMARK 465 HIS B 425 REMARK 465 HIS B 426 REMARK 465 HIS B 427 REMARK 465 HIS B 428 REMARK 465 MET E 283 REMARK 465 HIS E 284 REMARK 465 HIS E 285 REMARK 465 HIS E 286 REMARK 465 HIS E 287 REMARK 465 HIS E 288 REMARK 465 HIS E 289 REMARK 465 LEU E 404 REMARK 465 HIS E 405 REMARK 465 GLN E 406 REMARK 465 PHE E 407 REMARK 465 GLU E 408 REMARK 465 PHE E 409 REMARK 465 THR E 410 REMARK 465 ASP E 411 REMARK 465 GLU E 412 REMARK 465 PRO E 413 REMARK 465 GLU E 414 REMARK 465 GLU E 415 REMARK 465 GLN E 416 REMARK 465 LYS E 417 REMARK 465 ALA E 418 REMARK 465 VAL E 419 REMARK 465 ASP E 420 REMARK 465 GLY E 421 REMARK 465 SER E 422 REMARK 465 HIS E 423 REMARK 465 HIS E 424 REMARK 465 HIS E 425 REMARK 465 HIS E 426 REMARK 465 HIS E 427 REMARK 465 HIS E 428 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 404 CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N4 DC C 21 O ASN E 307 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 5 C3' - C2' - C1' ANGL. DEV. = -6.7 DEGREES REMARK 500 DG C 5 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG C 6 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC C 8 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT C 23 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC C 24 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG W 6 C1' - O4' - C4' ANGL. DEV. = -6.6 DEGREES REMARK 500 DG W 6 C3' - C2' - C1' ANGL. DEV. = -7.4 DEGREES REMARK 500 DG W 6 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 DC W 8 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG W 13 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG W 13 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC W 17 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG W 20 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT W 24 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC W 25 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 PRO A 402 C - N - CA ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 291 -157.46 -105.08 REMARK 500 THR A 297 26.73 -60.09 REMARK 500 ILE A 304 -39.02 -149.40 REMARK 500 ILE A 329 -3.01 -52.94 REMARK 500 ARG A 333 71.11 56.30 REMARK 500 TYR A 342 80.62 -162.72 REMARK 500 GLU A 343 88.33 59.37 REMARK 500 MET A 353 -75.30 -71.57 REMARK 500 LYS A 367 43.23 -96.41 REMARK 500 LEU A 368 -82.62 -120.95 REMARK 500 CYS A 369 -99.64 -72.52 REMARK 500 SER A 370 -63.48 -178.66 REMARK 500 VAL A 371 -29.01 -170.03 REMARK 500 SER A 372 -148.68 -138.06 REMARK 500 PRO A 393 42.93 -100.98 REMARK 500 LYS A 401 97.39 55.37 REMARK 500 HIS B 302 35.97 -97.76 REMARK 500 ILE B 304 -22.85 -160.04 REMARK 500 SER B 317 -135.30 -125.39 REMARK 500 ILE B 329 36.20 -79.75 REMARK 500 LYS B 331 2.39 -69.57 REMARK 500 ARG B 333 76.25 55.81 REMARK 500 TYR B 342 -51.39 -161.37 REMARK 500 GLU B 343 106.17 -174.80 REMARK 500 GLU B 344 -30.37 62.60 REMARK 500 VAL B 371 -146.43 -124.38 REMARK 500 SER B 372 -94.55 -100.14 REMARK 500 ILE B 397 -61.46 -101.04 REMARK 500 ASN B 400 -75.39 -81.18 REMARK 500 ASN E 307 50.38 -97.23 REMARK 500 SER E 317 -157.84 -155.15 REMARK 500 THR E 328 31.06 -92.42 REMARK 500 LYS E 331 -28.39 -160.00 REMARK 500 CYS E 338 86.57 -157.91 REMARK 500 TYR E 342 98.09 -163.09 REMARK 500 GLU E 343 76.89 48.69 REMARK 500 LYS E 367 -58.36 -133.86 REMARK 500 SER E 370 -44.04 -161.88 REMARK 500 VAL E 371 80.85 64.02 REMARK 500 SER E 372 165.81 77.93 REMARK 500 LEU E 396 99.58 -64.96 REMARK 500 REMARK 500 REMARK: NULL DBREF 4FB3 A 290 420 UNP P03074 LT_POVM3 290 420 DBREF 4FB3 B 290 420 UNP P03074 LT_POVM3 290 420 DBREF 4FB3 E 290 420 UNP P03074 LT_POVM3 290 420 DBREF 4FB3 W 1 26 PDB 4FB3 4FB3 1 26 DBREF 4FB3 C 1 26 PDB 4FB3 4FB3 1 26 SEQADV 4FB3 MET A 283 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS A 284 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS A 285 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS A 286 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS A 287 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS A 288 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS A 289 UNP P03074 EXPRESSION TAG SEQADV 4FB3 GLY A 421 UNP P03074 EXPRESSION TAG SEQADV 4FB3 SER A 422 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS A 423 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS A 424 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS A 425 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS A 426 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS A 427 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS A 428 UNP P03074 EXPRESSION TAG SEQADV 4FB3 MET B 283 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS B 284 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS B 285 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS B 286 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS B 287 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS B 288 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS B 289 UNP P03074 EXPRESSION TAG SEQADV 4FB3 GLY B 421 UNP P03074 EXPRESSION TAG SEQADV 4FB3 SER B 422 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS B 423 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS B 424 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS B 425 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS B 426 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS B 427 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS B 428 UNP P03074 EXPRESSION TAG SEQADV 4FB3 MET E 283 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS E 284 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS E 285 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS E 286 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS E 287 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS E 288 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS E 289 UNP P03074 EXPRESSION TAG SEQADV 4FB3 GLY E 421 UNP P03074 EXPRESSION TAG SEQADV 4FB3 SER E 422 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS E 423 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS E 424 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS E 425 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS E 426 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS E 427 UNP P03074 EXPRESSION TAG SEQADV 4FB3 HIS E 428 UNP P03074 EXPRESSION TAG SEQRES 1 C 26 DC DG DG DA DG DG DC DC DA DG DG DG DG SEQRES 2 C 26 DC DC DC DC DC DG DG DC DC DT DC DT DG SEQRES 1 W 26 DG DC DA DG DA DG DG DC DC DG DG DG DG SEQRES 2 W 26 DG DC DC DC DC DT DG DG DC DC DT DC DC SEQRES 1 A 146 MET HIS HIS HIS HIS HIS HIS SER ASP PHE PRO SER SER SEQRES 2 A 146 LEU THR GLY TYR LEU SER HIS ALA ILE TYR SER ASN LYS SEQRES 3 A 146 THR PHE PRO ALA PHE LEU VAL TYR SER THR LYS GLU LYS SEQRES 4 A 146 CYS LYS GLN LEU TYR ASP THR ILE GLY LYS PHE ARG PRO SEQRES 5 A 146 GLU PHE LYS CYS LEU VAL HIS TYR GLU GLU GLY GLY MET SEQRES 6 A 146 LEU PHE PHE LEU THR MET THR LYS HIS ARG VAL SER ALA SEQRES 7 A 146 VAL LYS ASN TYR CYS SER LYS LEU CYS SER VAL SER PHE SEQRES 8 A 146 LEU MET CYS LYS ALA VAL THR LYS PRO MET GLU CYS TYR SEQRES 9 A 146 GLN VAL VAL THR ALA ALA PRO PHE GLN LEU ILE THR GLU SEQRES 10 A 146 ASN LYS PRO GLY LEU HIS GLN PHE GLU PHE THR ASP GLU SEQRES 11 A 146 PRO GLU GLU GLN LYS ALA VAL ASP GLY SER HIS HIS HIS SEQRES 12 A 146 HIS HIS HIS SEQRES 1 B 146 MET HIS HIS HIS HIS HIS HIS SER ASP PHE PRO SER SER SEQRES 2 B 146 LEU THR GLY TYR LEU SER HIS ALA ILE TYR SER ASN LYS SEQRES 3 B 146 THR PHE PRO ALA PHE LEU VAL TYR SER THR LYS GLU LYS SEQRES 4 B 146 CYS LYS GLN LEU TYR ASP THR ILE GLY LYS PHE ARG PRO SEQRES 5 B 146 GLU PHE LYS CYS LEU VAL HIS TYR GLU GLU GLY GLY MET SEQRES 6 B 146 LEU PHE PHE LEU THR MET THR LYS HIS ARG VAL SER ALA SEQRES 7 B 146 VAL LYS ASN TYR CYS SER LYS LEU CYS SER VAL SER PHE SEQRES 8 B 146 LEU MET CYS LYS ALA VAL THR LYS PRO MET GLU CYS TYR SEQRES 9 B 146 GLN VAL VAL THR ALA ALA PRO PHE GLN LEU ILE THR GLU SEQRES 10 B 146 ASN LYS PRO GLY LEU HIS GLN PHE GLU PHE THR ASP GLU SEQRES 11 B 146 PRO GLU GLU GLN LYS ALA VAL ASP GLY SER HIS HIS HIS SEQRES 12 B 146 HIS HIS HIS SEQRES 1 E 146 MET HIS HIS HIS HIS HIS HIS SER ASP PHE PRO SER SER SEQRES 2 E 146 LEU THR GLY TYR LEU SER HIS ALA ILE TYR SER ASN LYS SEQRES 3 E 146 THR PHE PRO ALA PHE LEU VAL TYR SER THR LYS GLU LYS SEQRES 4 E 146 CYS LYS GLN LEU TYR ASP THR ILE GLY LYS PHE ARG PRO SEQRES 5 E 146 GLU PHE LYS CYS LEU VAL HIS TYR GLU GLU GLY GLY MET SEQRES 6 E 146 LEU PHE PHE LEU THR MET THR LYS HIS ARG VAL SER ALA SEQRES 7 E 146 VAL LYS ASN TYR CYS SER LYS LEU CYS SER VAL SER PHE SEQRES 8 E 146 LEU MET CYS LYS ALA VAL THR LYS PRO MET GLU CYS TYR SEQRES 9 E 146 GLN VAL VAL THR ALA ALA PRO PHE GLN LEU ILE THR GLU SEQRES 10 E 146 ASN LYS PRO GLY LEU HIS GLN PHE GLU PHE THR ASP GLU SEQRES 11 E 146 PRO GLU GLU GLN LYS ALA VAL ASP GLY SER HIS HIS HIS SEQRES 12 E 146 HIS HIS HIS HELIX 1 1 THR A 318 ASP A 327 1 10 HELIX 2 2 THR A 328 PHE A 332 5 5 HELIX 3 3 VAL A 358 SER A 366 1 9 HELIX 4 4 LYS A 381 VAL A 389 1 9 HELIX 5 5 THR B 318 ASP B 327 1 10 HELIX 6 6 THR B 328 PHE B 332 5 5 HELIX 7 7 VAL B 358 CYS B 369 1 12 HELIX 8 8 LYS B 381 THR B 390 1 10 HELIX 9 9 THR E 318 ASP E 327 1 10 HELIX 10 10 VAL E 358 SER E 366 1 9 HELIX 11 11 LYS E 381 VAL E 389 1 9 SHEET 1 A 5 CYS A 376 ALA A 378 0 SHEET 2 A 5 THR A 309 SER A 317 -1 N LEU A 314 O LYS A 377 SHEET 3 A 5 GLY A 346 ARG A 357 -1 O HIS A 356 N PHE A 310 SHEET 4 A 5 PRO A 334 HIS A 341 -1 N VAL A 340 O MET A 347 SHEET 5 A 5 GLN A 395 GLU A 399 -1 O ILE A 397 N LEU A 339 SHEET 1 B 6 LEU B 300 SER B 301 0 SHEET 2 B 6 MET B 375 VAL B 379 -1 O ALA B 378 N SER B 301 SHEET 3 B 6 THR B 309 TYR B 316 -1 N TYR B 316 O MET B 375 SHEET 4 B 6 GLY B 346 ARG B 357 -1 O HIS B 356 N PHE B 310 SHEET 5 B 6 PRO B 334 HIS B 341 -1 N VAL B 340 O MET B 347 SHEET 6 B 6 GLN B 395 GLU B 399 -1 O GLN B 395 N HIS B 341 SHEET 1 C 6 LEU E 300 SER E 301 0 SHEET 2 C 6 LEU E 374 VAL E 379 -1 O ALA E 378 N SER E 301 SHEET 3 C 6 THR E 309 SER E 317 -1 N ALA E 312 O VAL E 379 SHEET 4 C 6 GLY E 345 ARG E 357 -1 O HIS E 356 N PHE E 310 SHEET 5 C 6 PRO E 334 TYR E 342 -1 N GLU E 335 O LEU E 351 SHEET 6 C 6 GLN E 395 GLU E 399 -1 O GLN E 395 N HIS E 341 CISPEP 1 SER A 370 VAL A 371 0 -20.25 CISPEP 2 ALA A 392 PRO A 393 0 -4.04 CISPEP 3 SER B 370 VAL B 371 0 -2.63 CISPEP 4 ALA B 392 PRO B 393 0 0.42 CISPEP 5 SER E 370 VAL E 371 0 22.28 CISPEP 6 ALA E 392 PRO E 393 0 2.06 CRYST1 165.150 167.922 77.728 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006055 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012865 0.00000