HEADER HYDROLASE 25-MAY-12 4FCX TITLE S.POMBE MRE11 APOENZYM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR PROTEIN RAD32; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: MRE11 AMINO ACIDS 15-413; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 284812; SOURCE 5 STRAIN: 972 / ATCC 24843; SOURCE 6 GENE: RAD32, SPAC13C5.07; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA DOUBLE-STRAND BREAK REPAIR, NUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.B.SCHILLER,K.LAMMENS,K.P.HOPFNER REVDAT 4 28-FEB-24 4FCX 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4FCX 1 REMARK REVDAT 2 25-JUL-12 4FCX 1 JRNL REVDAT 1 20-JUN-12 4FCX 0 JRNL AUTH C.B.SCHILLER,K.LAMMENS,I.GUERINI,B.COORDES,H.FELDMANN, JRNL AUTH 2 F.SCHLAUDERER,C.MOCKEL,A.SCHELE,K.STRASSER,S.P.JACKSON, JRNL AUTH 3 K.P.HOPFNER JRNL TITL STRUCTURE OF MRE11-NBS1 COMPLEX YIELDS INSIGHTS INTO JRNL TITL 2 ATAXIA-TELANGIECTASIA-LIKE DISEASE MUTATIONS AND DNA DAMAGE JRNL TITL 3 SIGNALING. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 693 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 22705791 JRNL DOI 10.1038/NSMB.2323 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 20939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.450 REMARK 3 FREE R VALUE TEST SET COUNT : 1978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.8429 - 7.1521 0.94 1413 147 0.2177 0.2355 REMARK 3 2 7.1521 - 5.7102 0.98 1383 146 0.2467 0.3183 REMARK 3 3 5.7102 - 4.9983 0.98 1372 149 0.2044 0.2728 REMARK 3 4 4.9983 - 4.5458 0.98 1362 138 0.1907 0.2555 REMARK 3 5 4.5458 - 4.2225 0.98 1326 147 0.1870 0.2611 REMARK 3 6 4.2225 - 3.9751 0.98 1357 148 0.2020 0.2826 REMARK 3 7 3.9751 - 3.7771 0.99 1372 130 0.2204 0.2330 REMARK 3 8 3.7771 - 3.6134 0.99 1335 138 0.2266 0.2897 REMARK 3 9 3.6134 - 3.4749 0.99 1339 144 0.2415 0.3365 REMARK 3 10 3.4749 - 3.3554 0.99 1360 143 0.2564 0.3572 REMARK 3 11 3.3554 - 3.2509 0.99 1355 146 0.2769 0.3173 REMARK 3 12 3.2509 - 3.1582 0.99 1345 122 0.2877 0.3439 REMARK 3 13 3.1582 - 3.0753 0.99 1320 164 0.3090 0.3929 REMARK 3 14 3.0753 - 3.0005 0.95 1322 116 0.3466 0.4565 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.11 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 46.99 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.11520 REMARK 3 B22 (A**2) : 17.74940 REMARK 3 B33 (A**2) : -22.64490 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6029 REMARK 3 ANGLE : 1.210 8177 REMARK 3 CHIRALITY : 0.081 912 REMARK 3 PLANARITY : 0.005 1061 REMARK 3 DIHEDRAL : 16.696 2239 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FCX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072744. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21028 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM HEPES 300MM NACL, 0.1MM EDTA, 1MM REMARK 280 MNCL2, 2MM BETA-MERCAPTOETHANOL, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.20400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.14800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.13100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.14800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.20400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.13100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -38.20400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -41.13100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 10 REMARK 465 PRO B 11 REMARK 465 LEU B 12 REMARK 465 GLY B 13 REMARK 465 ASP B 101 REMARK 465 THR B 102 REMARK 465 SER B 103 REMARK 465 LEU B 104 REMARK 465 THR B 105 REMARK 465 THR B 106 REMARK 465 GLY B 107 REMARK 465 ASP B 108 REMARK 465 THR B 109 REMARK 465 ALA B 110 REMARK 465 ASP B 136 REMARK 465 PRO B 137 REMARK 465 SER B 138 REMARK 465 GLY B 139 REMARK 465 ASP B 140 REMARK 465 GLY B 141 REMARK 465 SER B 324 REMARK 465 ILE B 325 REMARK 465 PRO B 326 REMARK 465 PRO B 327 REMARK 465 MET B 328 REMARK 465 GLY B 359 REMARK 465 THR B 360 REMARK 465 VAL B 361 REMARK 465 PRO B 362 REMARK 465 VAL B 363 REMARK 465 VAL B 364 REMARK 465 GLU B 365 REMARK 465 ASN B 366 REMARK 465 LYS B 412 REMARK 465 LYS B 413 REMARK 465 GLY A 10 REMARK 465 PRO A 11 REMARK 465 LEU A 12 REMARK 465 ASP A 101 REMARK 465 THR A 102 REMARK 465 SER A 103 REMARK 465 LEU A 104 REMARK 465 THR A 105 REMARK 465 THR A 106 REMARK 465 GLY A 107 REMARK 465 ASP A 108 REMARK 465 THR A 109 REMARK 465 ALA A 110 REMARK 465 VAL A 111 REMARK 465 CYS A 112 REMARK 465 ASN A 113 REMARK 465 ILE A 114 REMARK 465 ASN A 115 REMARK 465 TYR A 116 REMARK 465 HIS A 134 REMARK 465 ASP A 135 REMARK 465 ASP A 136 REMARK 465 PRO A 137 REMARK 465 SER A 138 REMARK 465 GLY A 139 REMARK 465 ASP A 140 REMARK 465 GLY A 141 REMARK 465 ARG A 142 REMARK 465 THR A 360 REMARK 465 VAL A 361 REMARK 465 PRO A 362 REMARK 465 VAL A 363 REMARK 465 VAL A 364 REMARK 465 GLU A 365 REMARK 465 ASN A 366 REMARK 465 GLU A 367 REMARK 465 LYS A 412 REMARK 465 LYS A 413 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 95 O REMARK 470 ASP B 135 C O REMARK 470 TYR B 157 CE1 CE2 CZ OH REMARK 470 ASP B 165 O REMARK 470 ALA B 227 O CB REMARK 470 ASN A 70 O REMARK 470 LEU A 117 CG CD1 CD2 REMARK 470 ASP A 118 CG OD1 OD2 REMARK 470 PRO A 119 CG CD REMARK 470 ASN A 120 CG OD1 ND2 REMARK 470 ILE A 121 CG1 CG2 CD1 REMARK 470 ASN A 133 O REMARK 470 ASN A 164 O REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ILE B 114 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS B 33 CG CD CE NZ REMARK 480 GLU B 54 CG CD OE1 OE2 REMARK 480 ARG B 74 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 92 CG CD CE NZ REMARK 480 GLU B 95 CG CD OE1 OE2 REMARK 480 TYR B 116 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 LYS B 204 CG CD CE NZ REMARK 480 GLU B 214 CG CD OE1 OE2 REMARK 480 LYS B 265 CG CD CE NZ REMARK 480 GLU B 321 CG CD OE1 OE2 REMARK 480 ASN B 331 CG OD1 ND2 REMARK 480 LYS B 333 CG CD CE NZ REMARK 480 TYR B 338 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 LYS B 342 CG CD CE NZ REMARK 480 GLU B 345 CG CD OE1 OE2 REMARK 480 GLU B 349 CG CD OE1 OE2 REMARK 480 LYS B 368 CB CG CD CE NZ REMARK 480 GLN B 385 CG CD OE1 NE2 REMARK 480 GLU B 387 CB CG CD OE1 OE2 REMARK 480 ARG B 391 CB CG CD NE CZ NH1 NH2 REMARK 480 ASN B 394 CG OD1 ND2 REMARK 480 ARG B 395 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 399 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 71 CG CD CE NZ REMARK 480 ARG A 74 CG CD NE CZ NH1 NH2 REMARK 480 TYR A 157 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 TYR A 157 OH REMARK 480 ARG A 160 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS A 176 CG CD CE NZ REMARK 480 ARG A 193 CG CD NE CZ NH1 NH2 REMARK 480 ILE A 275 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 375 OD2 ASP A 405 2.05 REMARK 500 O ASP A 165 OG SER A 197 2.13 REMARK 500 CD1 LEU B 319 CG TYR B 384 2.18 REMARK 500 NH2 ARG A 55 OE2 GLU A 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL B 36 -59.18 -122.79 REMARK 500 ASP B 56 71.63 52.30 REMARK 500 TYR B 116 -132.94 60.56 REMARK 500 LEU B 117 38.34 -150.90 REMARK 500 SER B 144 115.95 112.49 REMARK 500 LEU B 206 98.94 -60.83 REMARK 500 HIS B 250 -63.21 72.00 REMARK 500 LEU B 255 46.18 -140.16 REMARK 500 LYS B 332 -52.50 -124.26 REMARK 500 THR B 386 -154.33 -95.47 REMARK 500 ALA B 403 -0.58 -53.37 REMARK 500 THR B 404 -44.35 -130.30 REMARK 500 SER A 14 -76.55 -131.77 REMARK 500 ASP A 25 61.01 38.27 REMARK 500 PRO A 93 -98.72 -11.44 REMARK 500 GLU A 95 -0.69 66.25 REMARK 500 ASP A 118 -164.16 -79.96 REMARK 500 PRO A 230 4.50 -65.35 REMARK 500 HIS A 250 -9.99 70.16 REMARK 500 LYS A 265 73.79 51.48 REMARK 500 GLU A 330 77.52 -64.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 25 OD2 REMARK 620 2 HIS B 27 NE2 110.8 REMARK 620 3 ASP B 65 OD1 90.5 95.4 REMARK 620 4 HIS B 252 NE2 79.9 78.4 165.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 65 OD1 REMARK 620 2 ASN B 133 ND2 114.4 REMARK 620 3 HIS B 222 NE2 75.9 89.4 REMARK 620 4 HIS B 250 ND1 167.6 75.3 97.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 25 OD2 REMARK 620 2 HIS A 27 NE2 104.8 REMARK 620 3 ASP A 65 OD2 83.9 91.6 REMARK 620 4 HIS A 252 NE2 83.3 84.5 165.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 65 OD2 REMARK 620 2 HIS A 250 ND1 154.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FBK RELATED DB: PDB REMARK 900 RELATED ID: 4FBQ RELATED DB: PDB REMARK 900 RELATED ID: 4FBW RELATED DB: PDB DBREF 4FCX B 15 413 UNP Q09683 RAD32_SCHPO 15 413 DBREF 4FCX A 15 413 UNP Q09683 RAD32_SCHPO 15 413 SEQADV 4FCX GLY B 10 UNP Q09683 EXPRESSION TAG SEQADV 4FCX PRO B 11 UNP Q09683 EXPRESSION TAG SEQADV 4FCX LEU B 12 UNP Q09683 EXPRESSION TAG SEQADV 4FCX GLY B 13 UNP Q09683 EXPRESSION TAG SEQADV 4FCX SER B 14 UNP Q09683 EXPRESSION TAG SEQADV 4FCX GLY A 10 UNP Q09683 EXPRESSION TAG SEQADV 4FCX PRO A 11 UNP Q09683 EXPRESSION TAG SEQADV 4FCX LEU A 12 UNP Q09683 EXPRESSION TAG SEQADV 4FCX GLY A 13 UNP Q09683 EXPRESSION TAG SEQADV 4FCX SER A 14 UNP Q09683 EXPRESSION TAG SEQRES 1 B 404 GLY PRO LEU GLY SER GLU ASN THR ILE ARG ILE LEU ILE SEQRES 2 B 404 SER SER ASP PRO HIS VAL GLY TYR GLY GLU LYS ASP PRO SEQRES 3 B 404 VAL ARG GLY ASN ASP SER PHE VAL SER PHE ASN GLU ILE SEQRES 4 B 404 LEU GLU ILE ALA ARG GLU ARG ASP VAL ASP MET ILE LEU SEQRES 5 B 404 LEU GLY GLY ASP ILE PHE HIS ASP ASN LYS PRO SER ARG SEQRES 6 B 404 LYS ALA LEU TYR GLN ALA LEU ARG SER LEU ARG LEU ASN SEQRES 7 B 404 CYS LEU GLY ASP LYS PRO CYS GLU LEU GLU LEU LEU SER SEQRES 8 B 404 ASP THR SER LEU THR THR GLY ASP THR ALA VAL CYS ASN SEQRES 9 B 404 ILE ASN TYR LEU ASP PRO ASN ILE ASN VAL ALA ILE PRO SEQRES 10 B 404 VAL PHE SER ILE HIS GLY ASN HIS ASP ASP PRO SER GLY SEQRES 11 B 404 ASP GLY ARG TYR SER ALA LEU ASP ILE LEU GLN VAL THR SEQRES 12 B 404 GLY LEU VAL ASN TYR PHE GLY ARG VAL PRO GLU ASN ASP SEQRES 13 B 404 ASN ILE VAL VAL SER PRO ILE LEU LEU GLN LYS GLY PHE SEQRES 14 B 404 THR LYS LEU ALA LEU TYR GLY ILE SER ASN VAL ARG ASP SEQRES 15 B 404 GLU ARG LEU TYR HIS SER PHE ARG GLU ASN LYS VAL LYS SEQRES 16 B 404 PHE LEU ARG PRO ASP LEU TYR ARG ASP GLU TRP PHE ASN SEQRES 17 B 404 LEU LEU THR VAL HIS GLN ASN HIS SER ALA HIS THR PRO SEQRES 18 B 404 THR SER TYR LEU PRO GLU SER PHE ILE GLN ASP PHE TYR SEQRES 19 B 404 ASP PHE VAL LEU TRP GLY HIS GLU HIS GLU CYS LEU ILE SEQRES 20 B 404 ASP GLY SER TYR ASN PRO THR GLN LYS PHE THR VAL VAL SEQRES 21 B 404 GLN PRO GLY SER THR ILE ALA THR SER LEU SER PRO GLY SEQRES 22 B 404 GLU THR ALA PRO LYS HIS CYS GLY ILE LEU ASN ILE THR SEQRES 23 B 404 GLY LYS ASP PHE HIS LEU GLU LYS ILE ARG LEU ARG THR SEQRES 24 B 404 VAL ARG PRO PHE ILE MET LYS ASP ILE ILE LEU SER GLU SEQRES 25 B 404 VAL SER SER ILE PRO PRO MET VAL GLU ASN LYS LYS GLU SEQRES 26 B 404 VAL LEU THR TYR LEU ILE SER LYS VAL GLU GLU ALA ILE SEQRES 27 B 404 THR GLU ALA ASN ALA GLN TRP TYR GLU ALA GLN GLY THR SEQRES 28 B 404 VAL PRO VAL VAL GLU ASN GLU LYS PRO PRO LEU PRO LEU SEQRES 29 B 404 ILE ARG LEU ARG VAL ASP TYR THR GLY GLY TYR GLN THR SEQRES 30 B 404 GLU ASN PRO GLN ARG PHE SER ASN ARG PHE VAL GLY ARG SEQRES 31 B 404 VAL ALA ASN ALA THR ASP VAL VAL GLN PHE TYR LEU LYS SEQRES 32 B 404 LYS SEQRES 1 A 404 GLY PRO LEU GLY SER GLU ASN THR ILE ARG ILE LEU ILE SEQRES 2 A 404 SER SER ASP PRO HIS VAL GLY TYR GLY GLU LYS ASP PRO SEQRES 3 A 404 VAL ARG GLY ASN ASP SER PHE VAL SER PHE ASN GLU ILE SEQRES 4 A 404 LEU GLU ILE ALA ARG GLU ARG ASP VAL ASP MET ILE LEU SEQRES 5 A 404 LEU GLY GLY ASP ILE PHE HIS ASP ASN LYS PRO SER ARG SEQRES 6 A 404 LYS ALA LEU TYR GLN ALA LEU ARG SER LEU ARG LEU ASN SEQRES 7 A 404 CYS LEU GLY ASP LYS PRO CYS GLU LEU GLU LEU LEU SER SEQRES 8 A 404 ASP THR SER LEU THR THR GLY ASP THR ALA VAL CYS ASN SEQRES 9 A 404 ILE ASN TYR LEU ASP PRO ASN ILE ASN VAL ALA ILE PRO SEQRES 10 A 404 VAL PHE SER ILE HIS GLY ASN HIS ASP ASP PRO SER GLY SEQRES 11 A 404 ASP GLY ARG TYR SER ALA LEU ASP ILE LEU GLN VAL THR SEQRES 12 A 404 GLY LEU VAL ASN TYR PHE GLY ARG VAL PRO GLU ASN ASP SEQRES 13 A 404 ASN ILE VAL VAL SER PRO ILE LEU LEU GLN LYS GLY PHE SEQRES 14 A 404 THR LYS LEU ALA LEU TYR GLY ILE SER ASN VAL ARG ASP SEQRES 15 A 404 GLU ARG LEU TYR HIS SER PHE ARG GLU ASN LYS VAL LYS SEQRES 16 A 404 PHE LEU ARG PRO ASP LEU TYR ARG ASP GLU TRP PHE ASN SEQRES 17 A 404 LEU LEU THR VAL HIS GLN ASN HIS SER ALA HIS THR PRO SEQRES 18 A 404 THR SER TYR LEU PRO GLU SER PHE ILE GLN ASP PHE TYR SEQRES 19 A 404 ASP PHE VAL LEU TRP GLY HIS GLU HIS GLU CYS LEU ILE SEQRES 20 A 404 ASP GLY SER TYR ASN PRO THR GLN LYS PHE THR VAL VAL SEQRES 21 A 404 GLN PRO GLY SER THR ILE ALA THR SER LEU SER PRO GLY SEQRES 22 A 404 GLU THR ALA PRO LYS HIS CYS GLY ILE LEU ASN ILE THR SEQRES 23 A 404 GLY LYS ASP PHE HIS LEU GLU LYS ILE ARG LEU ARG THR SEQRES 24 A 404 VAL ARG PRO PHE ILE MET LYS ASP ILE ILE LEU SER GLU SEQRES 25 A 404 VAL SER SER ILE PRO PRO MET VAL GLU ASN LYS LYS GLU SEQRES 26 A 404 VAL LEU THR TYR LEU ILE SER LYS VAL GLU GLU ALA ILE SEQRES 27 A 404 THR GLU ALA ASN ALA GLN TRP TYR GLU ALA GLN GLY THR SEQRES 28 A 404 VAL PRO VAL VAL GLU ASN GLU LYS PRO PRO LEU PRO LEU SEQRES 29 A 404 ILE ARG LEU ARG VAL ASP TYR THR GLY GLY TYR GLN THR SEQRES 30 A 404 GLU ASN PRO GLN ARG PHE SER ASN ARG PHE VAL GLY ARG SEQRES 31 A 404 VAL ALA ASN ALA THR ASP VAL VAL GLN PHE TYR LEU LYS SEQRES 32 A 404 LYS HET MN B 501 1 HET MN B 502 1 HET MN A 501 1 HET MN A 502 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 4(MN 2+) HELIX 1 1 ASN B 39 ARG B 55 1 17 HELIX 2 2 SER B 73 LEU B 89 1 17 HELIX 3 3 SER B 144 THR B 152 1 9 HELIX 4 4 ARG B 190 GLU B 200 1 11 HELIX 5 5 THR B 229 TYR B 233 5 5 HELIX 6 6 PRO B 235 ILE B 239 5 5 HELIX 7 7 SER B 280 THR B 284 5 5 HELIX 8 8 LYS B 332 GLN B 358 1 27 HELIX 9 9 ASN B 388 ASN B 394 1 7 HELIX 10 10 VAL A 36 GLY A 38 5 3 HELIX 11 11 ASN A 39 ARG A 55 1 17 HELIX 12 12 SER A 73 LEU A 89 1 17 HELIX 13 13 SER A 144 THR A 152 1 9 HELIX 14 14 ARG A 190 GLU A 200 1 11 HELIX 15 15 PRO A 235 ILE A 239 5 5 HELIX 16 16 SER A 280 ALA A 285 5 6 HELIX 17 17 SER A 320 VAL A 322 5 3 HELIX 18 18 ASN A 331 GLY A 359 1 29 HELIX 19 19 ASN A 388 ASN A 394 1 7 HELIX 20 20 ARG A 395 VAL A 397 5 3 SHEET 1 A 6 VAL B 155 TYR B 157 0 SHEET 2 A 6 VAL B 127 SER B 129 1 N SER B 129 O ASN B 156 SHEET 3 A 6 MET B 59 LEU B 62 1 N ILE B 60 O PHE B 128 SHEET 4 A 6 THR B 17 SER B 23 1 N LEU B 21 O LEU B 61 SHEET 5 A 6 HIS B 288 THR B 295 -1 O GLY B 290 N ILE B 22 SHEET 6 A 6 ASP B 298 ARG B 305 -1 O HIS B 300 N ASN B 293 SHEET 1 B 7 GLU B 97 SER B 100 0 SHEET 2 B 7 ILE A 172 LYS A 176 -1 O GLN A 175 N GLU B 97 SHEET 3 B 7 THR A 179 ILE A 186 -1 O LEU A 181 N LEU A 174 SHEET 4 B 7 TRP A 215 VAL A 221 1 O LEU A 218 N TYR A 184 SHEET 5 B 7 PHE A 245 TRP A 248 1 O LEU A 247 N LEU A 219 SHEET 6 B 7 PHE A 266 GLN A 270 1 O THR A 267 N VAL A 246 SHEET 7 B 7 LEU A 255 ASN A 261 -1 N ASN A 261 O PHE A 266 SHEET 1 C 2 ILE B 167 VAL B 169 0 SHEET 2 C 2 VAL B 203 PHE B 205 1 O LYS B 204 N VAL B 169 SHEET 1 D 7 LEU B 255 ASN B 261 0 SHEET 2 D 7 PHE B 266 GLN B 270 -1 O PHE B 266 N ASN B 261 SHEET 3 D 7 PHE B 245 TRP B 248 1 N TRP B 248 O VAL B 269 SHEET 4 D 7 PHE B 216 VAL B 221 1 N LEU B 219 O LEU B 247 SHEET 5 D 7 THR B 179 GLY B 185 1 N ALA B 182 O PHE B 216 SHEET 6 D 7 ILE B 172 LYS B 176 -1 N ILE B 172 O LEU B 183 SHEET 7 D 7 GLU A 97 LEU A 98 -1 O GLU A 97 N GLN B 175 SHEET 1 E 3 PHE B 312 ILE B 318 0 SHEET 2 E 3 LEU B 373 ASP B 379 1 O ARG B 377 N ILE B 317 SHEET 3 E 3 VAL B 407 TYR B 410 1 O TYR B 410 N VAL B 378 SHEET 1 F 6 VAL A 155 TYR A 157 0 SHEET 2 F 6 VAL A 127 SER A 129 1 N VAL A 127 O ASN A 156 SHEET 3 F 6 MET A 59 LEU A 62 1 N LEU A 62 O PHE A 128 SHEET 4 F 6 ILE A 18 SER A 23 1 N LEU A 21 O LEU A 61 SHEET 5 F 6 HIS A 288 THR A 295 -1 O GLY A 290 N ILE A 22 SHEET 6 F 6 ASP A 298 ARG A 305 -1 O ASP A 298 N THR A 295 SHEET 1 G 2 ILE A 167 VAL A 169 0 SHEET 2 G 2 VAL A 203 PHE A 205 1 O LYS A 204 N VAL A 169 SHEET 1 H 3 PHE A 312 ILE A 318 0 SHEET 2 H 3 LEU A 373 ASP A 379 1 O ASP A 379 N ILE A 317 SHEET 3 H 3 VAL A 407 TYR A 410 1 O GLN A 408 N VAL A 378 LINK OD2 ASP B 25 MN MN B 501 1555 1555 2.24 LINK NE2 HIS B 27 MN MN B 501 1555 1555 2.50 LINK OD1 ASP B 65 MN MN B 501 1555 1555 2.46 LINK OD1 ASP B 65 MN MN B 502 1555 1555 2.26 LINK ND2 ASN B 133 MN MN B 502 1555 1555 2.49 LINK NE2 HIS B 222 MN MN B 502 1555 1555 2.47 LINK ND1 HIS B 250 MN MN B 502 1555 1555 2.50 LINK NE2 HIS B 252 MN MN B 501 1555 1555 2.39 LINK OD2 ASP A 25 MN MN A 502 1555 1555 2.35 LINK NE2 HIS A 27 MN MN A 502 1555 1555 2.53 LINK OD2 ASP A 65 MN MN A 501 1555 1555 2.25 LINK OD2 ASP A 65 MN MN A 502 1555 1555 2.26 LINK ND1 HIS A 250 MN MN A 501 1555 1555 2.49 LINK NE2 HIS A 252 MN MN A 502 1555 1555 2.42 CISPEP 1 VAL B 111 CYS B 112 0 0.10 CISPEP 2 ARG B 142 TYR B 143 0 -27.07 CISPEP 3 TYR B 143 SER B 144 0 8.58 CISPEP 4 SER A 14 GLU A 15 0 -5.42 CISPEP 5 PRO A 93 CYS A 94 0 -3.50 CISPEP 6 SER A 323 SER A 324 0 22.20 SITE 1 AC1 7 GLU A 192 ASP B 25 HIS B 27 ASP B 65 SITE 2 AC1 7 HIS B 250 HIS B 252 MN B 502 SITE 1 AC2 6 GLU A 192 ASP B 65 ASN B 133 HIS B 222 SITE 2 AC2 6 HIS B 250 MN B 501 SITE 1 AC3 6 ASP A 65 ASN A 133 HIS A 222 HIS A 250 SITE 2 AC3 6 MN A 502 GLU B 192 SITE 1 AC4 6 ASP A 25 HIS A 27 ASP A 65 HIS A 252 SITE 2 AC4 6 MN A 501 GLU B 192 CRYST1 76.408 82.262 164.296 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013088 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012156 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006087 0.00000