HEADER DNA BINDING PROTEIN 29-MAY-12 4FE7 TITLE STRUCTURE OF XYLOSE-BINDING TRANSCRIPTION ACTIVATOR XYLR COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOSE OPERON REGULATORY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: DH5 ALPHA; SOURCE 5 GENE: XYLR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS HTH_ARAC, HELIX-TURN-HELIX, PBP, PERIPLASMIC BINDING PROTEIN, DNA- KEYWDS 2 BINDING TRANSCRIPTION REGULATOR, DNA XYLOSE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.NI,M.A.SCHUMACHER REVDAT 6 28-FEB-24 4FE7 1 HETSYN REVDAT 5 29-JUL-20 4FE7 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 SITE REVDAT 4 15-NOV-17 4FE7 1 REMARK REVDAT 3 20-FEB-13 4FE7 1 JRNL REVDAT 2 02-JAN-13 4FE7 1 JRNL REVDAT 1 12-DEC-12 4FE7 0 JRNL AUTH L.NI,N.K.TONTHAT,N.CHINNAM,M.A.SCHUMACHER JRNL TITL STRUCTURES OF THE ESCHERICHIA COLI TRANSCRIPTION ACTIVATOR JRNL TITL 2 AND REGULATOR OF DIAUXIE, XYLR: AN ARAC DNA-BINDING FAMILY JRNL TITL 3 MEMBER WITH A LACI/GALR LIGAND-BINDING DOMAIN. JRNL REF NUCLEIC ACIDS RES. V. 41 1998 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23241389 JRNL DOI 10.1093/NAR/GKS1207 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 615 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 828 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3067 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.420 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.302 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.400 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.865 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3139 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4252 ; 1.275 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 377 ; 5.857 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;39.733 ;23.567 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 540 ;19.359 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;12.216 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 469 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2390 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1436 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2151 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 86 ; 0.176 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 75 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.241 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1923 ; 0.487 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3054 ; 0.816 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1355 ; 1.150 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1198 ; 1.909 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 272 REMARK 3 ORIGIN FOR THE GROUP (A): 45.8380 25.9350 112.8580 REMARK 3 T TENSOR REMARK 3 T11: 0.1554 T22: 0.1976 REMARK 3 T33: 0.1185 T12: 0.1170 REMARK 3 T13: -0.0569 T23: -0.0714 REMARK 3 L TENSOR REMARK 3 L11: 2.1411 L22: 1.5377 REMARK 3 L33: 6.2612 L12: -1.3356 REMARK 3 L13: -3.1557 L23: 3.0336 REMARK 3 S TENSOR REMARK 3 S11: -0.0403 S12: -0.2200 S13: 0.0721 REMARK 3 S21: 0.4041 S22: 0.3861 S23: -0.2798 REMARK 3 S31: 0.0693 S32: 0.9170 S33: -0.3458 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 285 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): 29.6090 12.7110 85.1900 REMARK 3 T TENSOR REMARK 3 T11: -0.0609 T22: 0.2416 REMARK 3 T33: 0.0906 T12: -0.0254 REMARK 3 T13: -0.0596 T23: -0.2102 REMARK 3 L TENSOR REMARK 3 L11: 6.8077 L22: 1.9307 REMARK 3 L33: 1.1261 L12: -2.2663 REMARK 3 L13: -1.3520 L23: 0.1847 REMARK 3 S TENSOR REMARK 3 S11: -0.0361 S12: 0.0205 S13: -0.6046 REMARK 3 S21: 0.1380 S22: -0.0482 S23: 0.0434 REMARK 3 S31: 0.2488 S32: -0.2152 S33: 0.0842 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4FE7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072789. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95689 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12704 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 107.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.38500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3 M LI2SO4 100 MM TRIS PH=8.50, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.70150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.03550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.03550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.85075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.03550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.03550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 161.55225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.03550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.03550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.85075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.03550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.03550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 161.55225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 107.70150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 215.40300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 ASP A 44 REMARK 465 ALA A 47 REMARK 465 ARG A 48 REMARK 465 ILE A 49 REMARK 465 ASP A 50 REMARK 465 LYS A 51 REMARK 465 ILE A 52 REMARK 465 LYS A 53 REMARK 465 ASP A 54 REMARK 465 VAL A 390 REMARK 465 MET A 391 REMARK 465 LEU A 392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 43 C GLU A 43 O 0.197 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 2 75.00 -111.27 REMARK 500 GLU A 36 59.45 -90.33 REMARK 500 ASP A 75 8.85 98.67 REMARK 500 GLU A 161 156.22 147.77 REMARK 500 ASN A 166 82.01 -162.85 REMARK 500 GLN A 184 22.69 85.51 REMARK 500 LYS A 212 -70.66 -98.33 REMARK 500 MET A 259 138.15 -172.36 REMARK 500 ARG A 274 -168.16 -119.57 REMARK 500 ARG A 280 50.71 -114.65 REMARK 500 THR A 283 -30.80 -143.08 REMARK 500 REMARK 500 REMARK: NULL DBREF 4FE7 A 1 392 UNP P0ACI3 XYLR_ECOLI 1 392 SEQADV 4FE7 MET A -19 UNP P0ACI3 EXPRESSION TAG SEQADV 4FE7 GLY A -18 UNP P0ACI3 EXPRESSION TAG SEQADV 4FE7 SER A -17 UNP P0ACI3 EXPRESSION TAG SEQADV 4FE7 SER A -16 UNP P0ACI3 EXPRESSION TAG SEQADV 4FE7 HIS A -15 UNP P0ACI3 EXPRESSION TAG SEQADV 4FE7 HIS A -14 UNP P0ACI3 EXPRESSION TAG SEQADV 4FE7 HIS A -13 UNP P0ACI3 EXPRESSION TAG SEQADV 4FE7 HIS A -12 UNP P0ACI3 EXPRESSION TAG SEQADV 4FE7 HIS A -11 UNP P0ACI3 EXPRESSION TAG SEQADV 4FE7 HIS A -10 UNP P0ACI3 EXPRESSION TAG SEQADV 4FE7 SER A -9 UNP P0ACI3 EXPRESSION TAG SEQADV 4FE7 SER A -8 UNP P0ACI3 EXPRESSION TAG SEQADV 4FE7 GLY A -7 UNP P0ACI3 EXPRESSION TAG SEQADV 4FE7 LEU A -6 UNP P0ACI3 EXPRESSION TAG SEQADV 4FE7 VAL A -5 UNP P0ACI3 EXPRESSION TAG SEQADV 4FE7 PRO A -4 UNP P0ACI3 EXPRESSION TAG SEQADV 4FE7 ARG A -3 UNP P0ACI3 EXPRESSION TAG SEQADV 4FE7 GLY A -2 UNP P0ACI3 EXPRESSION TAG SEQADV 4FE7 SER A -1 UNP P0ACI3 EXPRESSION TAG SEQADV 4FE7 HIS A 0 UNP P0ACI3 EXPRESSION TAG SEQRES 1 A 412 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 412 LEU VAL PRO ARG GLY SER HIS MET PHE THR LYS ARG HIS SEQRES 3 A 412 ARG ILE THR LEU LEU PHE ASN ALA ASN LYS ALA TYR ASP SEQRES 4 A 412 ARG GLN VAL VAL GLU GLY VAL GLY GLU TYR LEU GLN ALA SEQRES 5 A 412 SER GLN SER GLU TRP ASP ILE PHE ILE GLU GLU ASP PHE SEQRES 6 A 412 ARG ALA ARG ILE ASP LYS ILE LYS ASP TRP LEU GLY ASP SEQRES 7 A 412 GLY VAL ILE ALA ASP PHE ASP ASP LYS GLN ILE GLU GLN SEQRES 8 A 412 ALA LEU ALA ASP VAL ASP VAL PRO ILE VAL GLY VAL GLY SEQRES 9 A 412 GLY SER TYR HIS LEU ALA GLU SER TYR PRO PRO VAL HIS SEQRES 10 A 412 TYR ILE ALA THR ASP ASN TYR ALA LEU VAL GLU SER ALA SEQRES 11 A 412 PHE LEU HIS LEU LYS GLU LYS GLY VAL ASN ARG PHE ALA SEQRES 12 A 412 PHE TYR GLY LEU PRO GLU SER SER GLY LYS ARG TRP ALA SEQRES 13 A 412 THR GLU ARG GLU TYR ALA PHE ARG GLN LEU VAL ALA GLU SEQRES 14 A 412 GLU LYS TYR ARG GLY VAL VAL TYR GLN GLY LEU GLU THR SEQRES 15 A 412 ALA PRO GLU ASN TRP GLN HIS ALA GLN ASN ARG LEU ALA SEQRES 16 A 412 ASP TRP LEU GLN THR LEU PRO PRO GLN THR GLY ILE ILE SEQRES 17 A 412 ALA VAL THR ASP ALA ARG ALA ARG HIS ILE LEU GLN VAL SEQRES 18 A 412 CYS GLU HIS LEU HIS ILE PRO VAL PRO GLU LYS LEU CYS SEQRES 19 A 412 VAL ILE GLY ILE ASP ASN GLU GLU LEU THR ARG TYR LEU SEQRES 20 A 412 SER ARG VAL ALA LEU SER SER VAL ALA GLN GLY ALA ARG SEQRES 21 A 412 GLN MET GLY TYR GLN ALA ALA LYS LEU LEU HIS ARG LEU SEQRES 22 A 412 LEU ASP LYS GLU GLU MET PRO LEU GLN ARG ILE LEU VAL SEQRES 23 A 412 PRO PRO VAL ARG VAL ILE GLU ARG ARG SER THR ASP TYR SEQRES 24 A 412 ARG SER LEU THR ASP PRO ALA VAL ILE GLN ALA MET HIS SEQRES 25 A 412 TYR ILE ARG ASN HIS ALA CYS LYS GLY ILE LYS VAL ASP SEQRES 26 A 412 GLN VAL LEU ASP ALA VAL GLY ILE SER ARG SER ASN LEU SEQRES 27 A 412 GLU LYS ARG PHE LYS GLU GLU VAL GLY GLU THR ILE HIS SEQRES 28 A 412 ALA MET ILE HIS ALA GLU LYS LEU GLU LYS ALA ARG SER SEQRES 29 A 412 LEU LEU ILE SER THR THR LEU SER ILE ASN GLU ILE SER SEQRES 30 A 412 GLN MET CYS GLY TYR PRO SER LEU GLN TYR PHE TYR SER SEQRES 31 A 412 VAL PHE LYS LYS ALA TYR ASP THR THR PRO LYS GLU TYR SEQRES 32 A 412 ARG ASP VAL ASN SER GLU VAL MET LEU HET XYS A 401 10 HETNAM XYS ALPHA-D-XYLOPYRANOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE FORMUL 2 XYS C5 H10 O5 FORMUL 3 HOH *52(H2 O) HELIX 1 1 LYS A 16 GLN A 34 1 19 HELIX 2 2 ASP A 66 ALA A 74 1 9 HELIX 3 3 LEU A 89 TYR A 93 5 5 HELIX 4 4 ASP A 102 LYS A 117 1 16 HELIX 5 5 LYS A 133 ALA A 148 1 16 HELIX 6 6 ASN A 166 LEU A 181 1 16 HELIX 7 7 THR A 191 HIS A 206 1 16 HELIX 8 8 GLY A 238 ASP A 255 1 18 HELIX 9 9 ARG A 274 ASP A 278 5 5 HELIX 10 10 ASP A 284 ALA A 298 1 15 HELIX 11 11 CYS A 299 GLY A 301 5 3 HELIX 12 12 LYS A 303 VAL A 311 1 9 HELIX 13 13 SER A 314 GLY A 327 1 14 HELIX 14 14 THR A 329 THR A 349 1 21 HELIX 15 15 SER A 352 CYS A 360 1 9 HELIX 16 16 SER A 364 TYR A 376 1 13 HELIX 17 17 THR A 379 SER A 388 1 10 SHEET 1 A 6 TRP A 37 ILE A 41 0 SHEET 2 A 6 HIS A 6 LEU A 11 1 N ILE A 8 O PHE A 40 SHEET 3 A 6 GLY A 59 ASP A 63 1 O ASP A 63 N LEU A 11 SHEET 4 A 6 ILE A 80 GLY A 85 1 O VAL A 83 N ALA A 62 SHEET 5 A 6 HIS A 97 THR A 101 1 O HIS A 97 N GLY A 82 SHEET 6 A 6 ARG A 263 VAL A 266 1 O VAL A 266 N ALA A 100 SHEET 1 B 6 VAL A 155 TYR A 157 0 SHEET 2 B 6 ARG A 121 TYR A 125 1 N PHE A 124 O TYR A 157 SHEET 3 B 6 THR A 185 ALA A 189 1 O ILE A 188 N ALA A 123 SHEET 4 B 6 CYS A 214 GLY A 217 1 O CYS A 214 N ILE A 187 SHEET 5 B 6 SER A 233 ALA A 236 1 O SER A 233 N GLY A 217 SHEET 6 B 6 ARG A 270 ILE A 272 -1 O ILE A 272 N SER A 234 CISPEP 1 VAL A 209 PRO A 210 0 -0.42 CRYST1 70.071 70.071 215.403 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014271 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004642 0.00000