HEADER OXIDOREDUCTASE/PROTEIN BINDING 06-JUN-12 4FHB TITLE ENHANCING DHFR CATALYSIS BY BINDING OF AN ALLOSTERIC REGULATOR TITLE 2 NANOBODY (NB179) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NB179; COMPND 8 CHAIN: D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: FOLA, TMRA, B0048, JW0047; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 10 ORGANISM_TAXID: 9844; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NANOBODY, DIHYDROFOLATE REDUCTASE, ALLOSTERIC ACTIVATOR, REDUCTASE, KEYWDS 2 OXIDOREDUCTASE-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.OYEN REVDAT 4 15-NOV-17 4FHB 1 REMARK REVDAT 3 11-SEP-13 4FHB 1 JRNL REVDAT 2 14-AUG-13 4FHB 1 JRNL REVDAT 1 24-APR-13 4FHB 0 JRNL AUTH D.OYEN,R.WECHSELBERGER,V.SRINIVASAN,J.STEYAERT,J.N.BARLOW JRNL TITL MECHANISTIC ANALYSIS OF ALLOSTERIC AND NON-ALLOSTERIC JRNL TITL 2 EFFECTS ARISING FROM NANOBODY BINDING TO TWO EPITOPES OF THE JRNL TITL 3 DIHYROFOLATE REDUCTASE OF ESCHERICHIA COLI. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1834 2147 2013 JRNL REFN ISSN 0006-3002 JRNL PMID 23911607 JRNL DOI 10.1016/J.BBAPAP.2013.07.010 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.4436 - 3.5276 1.00 2505 123 0.1982 0.2751 REMARK 3 2 3.5276 - 3.0818 1.00 2461 126 0.2194 0.3542 REMARK 3 3 3.0818 - 2.8001 1.00 2422 121 0.2465 0.3357 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 40.59 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.81520 REMARK 3 B22 (A**2) : -1.81520 REMARK 3 B33 (A**2) : 3.63040 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2334 REMARK 3 ANGLE : 1.174 3183 REMARK 3 CHIRALITY : 0.069 331 REMARK 3 PLANARITY : 0.006 409 REMARK 3 DIHEDRAL : 16.458 818 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 1:24) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8863 -13.1973 19.5116 REMARK 3 T TENSOR REMARK 3 T11: 0.3666 T22: 0.3426 REMARK 3 T33: 0.2724 T12: -0.1118 REMARK 3 T13: 0.0636 T23: -0.0568 REMARK 3 L TENSOR REMARK 3 L11: 3.0479 L22: 5.3433 REMARK 3 L33: 1.7250 L12: -0.6102 REMARK 3 L13: 0.8860 L23: -1.2253 REMARK 3 S TENSOR REMARK 3 S11: -0.0694 S12: 0.5578 S13: 0.0568 REMARK 3 S21: -0.6277 S22: 0.0252 S23: 0.5229 REMARK 3 S31: -0.1271 S32: 0.1831 S33: -0.1031 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 25:35) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6695 -19.6200 26.2122 REMARK 3 T TENSOR REMARK 3 T11: 0.2975 T22: 0.3575 REMARK 3 T33: 0.7763 T12: -0.0468 REMARK 3 T13: 0.0816 T23: 0.2404 REMARK 3 L TENSOR REMARK 3 L11: 6.8251 L22: 2.9717 REMARK 3 L33: 1.7454 L12: -2.5396 REMARK 3 L13: 1.4906 L23: 1.1418 REMARK 3 S TENSOR REMARK 3 S11: 0.3517 S12: -0.1882 S13: 0.0920 REMARK 3 S21: 0.3427 S22: -0.2253 S23: 0.9668 REMARK 3 S31: 0.0433 S32: -0.3722 S33: -0.1882 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 36:72) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5431 -18.0086 9.9691 REMARK 3 T TENSOR REMARK 3 T11: 0.3958 T22: 0.2686 REMARK 3 T33: 0.8525 T12: -0.0457 REMARK 3 T13: -0.2310 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 3.7846 L22: 4.7535 REMARK 3 L33: 1.5810 L12: 0.7925 REMARK 3 L13: -0.4485 L23: 1.0173 REMARK 3 S TENSOR REMARK 3 S11: -0.0731 S12: 0.3898 S13: -0.9792 REMARK 3 S21: -0.8644 S22: 0.2469 S23: 0.9946 REMARK 3 S31: 0.0104 S32: -0.1325 S33: 0.0919 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 73:96) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2947 -9.7791 12.6454 REMARK 3 T TENSOR REMARK 3 T11: 0.3512 T22: 0.2133 REMARK 3 T33: 0.8376 T12: 0.0762 REMARK 3 T13: -0.1220 T23: 0.1238 REMARK 3 L TENSOR REMARK 3 L11: 1.8858 L22: 1.6606 REMARK 3 L33: 6.2825 L12: 0.0183 REMARK 3 L13: -1.8282 L23: 0.6183 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: 0.3052 S13: -0.2662 REMARK 3 S21: -0.3819 S22: 0.1232 S23: 1.5068 REMARK 3 S31: -0.6893 S32: -1.1380 S33: -0.3444 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 97:129) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4023 -5.9481 20.2888 REMARK 3 T TENSOR REMARK 3 T11: 0.7594 T22: 0.2644 REMARK 3 T33: 0.5037 T12: -0.1397 REMARK 3 T13: 0.0531 T23: 0.0291 REMARK 3 L TENSOR REMARK 3 L11: 4.8148 L22: 2.9638 REMARK 3 L33: 2.5068 L12: -0.9572 REMARK 3 L13: 0.0736 L23: -0.5502 REMARK 3 S TENSOR REMARK 3 S11: -0.2421 S12: 0.3968 S13: 1.0023 REMARK 3 S21: -0.0082 S22: 0.4793 S23: 0.3678 REMARK 3 S31: -0.7072 S32: 0.2392 S33: -0.0816 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 130:150) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0688 -12.1075 32.3140 REMARK 3 T TENSOR REMARK 3 T11: 0.3903 T22: 0.3192 REMARK 3 T33: 0.3978 T12: -0.0350 REMARK 3 T13: 0.2331 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.4911 L22: 2.3378 REMARK 3 L33: 2.6047 L12: -0.9792 REMARK 3 L13: -0.2054 L23: 1.0583 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: -0.3073 S13: 0.3007 REMARK 3 S21: -0.0186 S22: 0.2434 S23: 0.4867 REMARK 3 S31: -0.8729 S32: 0.1553 S33: -0.1399 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 151:159) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5830 -6.3395 30.5291 REMARK 3 T TENSOR REMARK 3 T11: 0.7597 T22: 0.2690 REMARK 3 T33: 0.4907 T12: -0.0401 REMARK 3 T13: 0.4074 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 8.7749 L22: 4.6258 REMARK 3 L33: 7.0780 L12: -4.1839 REMARK 3 L13: 0.0211 L23: -0.8783 REMARK 3 S TENSOR REMARK 3 S11: 0.0894 S12: 0.0761 S13: 0.6075 REMARK 3 S21: 0.1948 S22: -0.1449 S23: -0.0942 REMARK 3 S31: -0.6601 S32: -0.2689 S33: -1.4843 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 3:33) REMARK 3 ORIGIN FOR THE GROUP (A): 41.9313 0.3474 43.3629 REMARK 3 T TENSOR REMARK 3 T11: 0.3054 T22: 0.4349 REMARK 3 T33: 0.3378 T12: 0.0452 REMARK 3 T13: -0.0302 T23: -0.2528 REMARK 3 L TENSOR REMARK 3 L11: 4.3640 L22: 2.2151 REMARK 3 L33: 1.0852 L12: 0.1282 REMARK 3 L13: 0.6267 L23: 0.9698 REMARK 3 S TENSOR REMARK 3 S11: 0.0789 S12: -1.0515 S13: -0.1619 REMARK 3 S21: 0.0413 S22: 0.0398 S23: -0.0269 REMARK 3 S31: 0.4619 S32: -0.1383 S33: 0.0369 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 34:67) REMARK 3 ORIGIN FOR THE GROUP (A): 46.5317 -2.5868 33.0343 REMARK 3 T TENSOR REMARK 3 T11: 0.4922 T22: 0.2453 REMARK 3 T33: 0.3183 T12: -0.0673 REMARK 3 T13: 0.1489 T23: -0.3215 REMARK 3 L TENSOR REMARK 3 L11: 2.3769 L22: 2.2022 REMARK 3 L33: 1.5266 L12: 0.1012 REMARK 3 L13: 0.1817 L23: 0.5251 REMARK 3 S TENSOR REMARK 3 S11: -0.3976 S12: -0.1872 S13: 0.5258 REMARK 3 S21: -0.3584 S22: 0.5671 S23: -0.5184 REMARK 3 S31: -0.3398 S32: 0.5984 S33: -0.0120 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 68:91) REMARK 3 ORIGIN FOR THE GROUP (A): 47.6057 -4.4727 41.6411 REMARK 3 T TENSOR REMARK 3 T11: 0.5063 T22: 0.4642 REMARK 3 T33: 0.3340 T12: 0.0157 REMARK 3 T13: -0.0479 T23: -0.2753 REMARK 3 L TENSOR REMARK 3 L11: 1.1094 L22: 3.9233 REMARK 3 L33: 2.8015 L12: 0.5243 REMARK 3 L13: 1.7413 L23: 1.3247 REMARK 3 S TENSOR REMARK 3 S11: 0.0738 S12: -0.4432 S13: 0.1218 REMARK 3 S21: -0.2191 S22: 0.3550 S23: -0.8111 REMARK 3 S31: -0.0044 S32: 0.2852 S33: -0.3427 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 92:112) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0899 0.2394 30.6528 REMARK 3 T TENSOR REMARK 3 T11: 0.5424 T22: 0.2534 REMARK 3 T33: 0.3972 T12: -0.0530 REMARK 3 T13: 0.0267 T23: -0.1329 REMARK 3 L TENSOR REMARK 3 L11: 6.2163 L22: 4.3857 REMARK 3 L33: 3.7444 L12: 4.4744 REMARK 3 L13: 3.9501 L23: 2.6519 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: -0.2872 S13: 0.7022 REMARK 3 S21: -0.0004 S22: 0.1304 S23: -0.1875 REMARK 3 S31: -0.0204 S32: 0.0794 S33: 0.1755 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 113:129) REMARK 3 ORIGIN FOR THE GROUP (A): 46.3101 5.8405 37.3542 REMARK 3 T TENSOR REMARK 3 T11: 0.5687 T22: 0.4343 REMARK 3 T33: 0.4739 T12: -0.0766 REMARK 3 T13: -0.0410 T23: -0.2010 REMARK 3 L TENSOR REMARK 3 L11: 4.9882 L22: 3.4090 REMARK 3 L33: 7.9222 L12: 0.7261 REMARK 3 L13: 5.6101 L23: -0.6568 REMARK 3 S TENSOR REMARK 3 S11: -0.2664 S12: 0.1217 S13: 0.3357 REMARK 3 S21: -0.8309 S22: 0.5338 S23: 0.1512 REMARK 3 S31: -0.1490 S32: 0.0231 S33: -0.1553 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FHB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072900. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00004 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10672 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CHLORIDE, 0.1M NA HEPES, REMARK 280 25% W/V PEG 4000, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.75767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 169.51533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 127.13650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 211.89417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.37883 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 84.75767 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 169.51533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 211.89417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 127.13650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.37883 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN D 1 REMARK 465 VAL D 2 REMARK 465 GLY D 42 REMARK 465 LYS D 43 REMARK 465 HIS D 130 REMARK 465 HIS D 131 REMARK 465 HIS D 132 REMARK 465 HIS D 133 REMARK 465 HIS D 134 REMARK 465 HIS D 135 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 77 OG REMARK 470 ASP A 79 CG OD1 OD2 REMARK 470 ARG A 98 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 ASP A 122 CG OD1 OD2 REMARK 470 SER D 17 OG REMARK 470 LEU D 18 CG CD1 CD2 REMARK 470 SER D 25 OG REMARK 470 GLU D 44 CG CD OE1 OE2 REMARK 470 LYS D 65 CG CD CE NZ REMARK 470 LYS D 76 CG CD CE NZ REMARK 470 LYS D 112 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 37 -26.15 69.17 REMARK 500 ARG A 52 143.20 -171.35 REMARK 500 ASP A 144 -166.93 -166.40 REMARK 500 LEU D 18 123.74 -179.91 REMARK 500 ARG D 45 99.41 -66.13 REMARK 500 SER D 85 75.25 -117.60 REMARK 500 PRO D 88 -14.73 -48.71 REMARK 500 HIS D 103 -144.66 63.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 FOL A 201 REMARK 615 NAP A 202 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K74 RELATED DB: PDB DBREF 4FHB A 1 159 UNP P0ABQ4 DYR_ECOLI 1 159 DBREF 4FHB D 1 135 PDB 4FHB 4FHB 1 135 SEQRES 1 A 159 MET ILE SER LEU ILE ALA ALA LEU ALA VAL ASP ARG VAL SEQRES 2 A 159 ILE GLY MET GLU ASN ALA MET PRO TRP ASN LEU PRO ALA SEQRES 3 A 159 ASP LEU ALA TRP PHE LYS ARG ASN THR LEU ASN LYS PRO SEQRES 4 A 159 VAL ILE MET GLY ARG HIS THR TRP GLU SER ILE GLY ARG SEQRES 5 A 159 PRO LEU PRO GLY ARG LYS ASN ILE ILE LEU SER SER GLN SEQRES 6 A 159 PRO GLY THR ASP ASP ARG VAL THR TRP VAL LYS SER VAL SEQRES 7 A 159 ASP GLU ALA ILE ALA ALA CYS GLY ASP VAL PRO GLU ILE SEQRES 8 A 159 MET VAL ILE GLY GLY GLY ARG VAL TYR GLU GLN PHE LEU SEQRES 9 A 159 PRO LYS ALA GLN LYS LEU TYR LEU THR HIS ILE ASP ALA SEQRES 10 A 159 GLU VAL GLU GLY ASP THR HIS PHE PRO ASP TYR GLU PRO SEQRES 11 A 159 ASP ASP TRP GLU SER VAL PHE SER GLU PHE HIS ASP ALA SEQRES 12 A 159 ASP ALA GLN ASN SER HIS SER TYR CYS PHE GLU ILE LEU SEQRES 13 A 159 GLU ARG ARG SEQRES 1 D 135 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 135 ALA GLY GLY SER LEU ARG LEU SER CYS GLU ALA SER GLY SEQRES 3 D 135 ARG THR PHE SER SER TYR ALA MET GLY TRP PHE ARG GLN SEQRES 4 D 135 ALA PRO GLY LYS GLU ARG ASP PHE VAL ALA VAL ILE SER SEQRES 5 D 135 TRP SER GLY SER ASN THR TYR TYR ALA ASP SER ALA LYS SEQRES 6 D 135 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 D 135 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 D 135 ALA ILE TYR TYR CYS ALA ALA PRO GLY ARG PRO HIS GLY SEQRES 9 D 135 SER SER TRP SER LEU ASN LYS LYS GLY GLN GLY TYR ASP SEQRES 10 D 135 TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SER HIS SEQRES 11 D 135 HIS HIS HIS HIS HIS HET FOL A 201 32 HET NAP A 202 48 HETNAM FOL FOLIC ACID HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 FOL C19 H19 N7 O6 FORMUL 4 NAP C21 H28 N7 O17 P3 HELIX 1 1 ALA A 9 ASP A 11 5 3 HELIX 2 2 LEU A 24 LEU A 36 1 13 HELIX 3 3 ARG A 44 GLY A 51 1 8 HELIX 4 4 SER A 77 ALA A 84 1 8 HELIX 5 5 GLY A 96 LEU A 104 1 9 HELIX 6 6 PRO A 105 ALA A 107 5 3 HELIX 7 7 THR D 28 TYR D 32 5 5 HELIX 8 8 ASP D 62 LYS D 65 5 4 HELIX 9 9 ASN D 74 LYS D 76 5 3 HELIX 10 10 SER D 106 LYS D 112 1 7 SHEET 1 A 8 THR A 73 VAL A 75 0 SHEET 2 A 8 ASN A 59 LEU A 62 1 N ILE A 61 O VAL A 75 SHEET 3 A 8 VAL A 40 GLY A 43 1 N MET A 42 O LEU A 62 SHEET 4 A 8 ILE A 91 VAL A 93 1 O MET A 92 N ILE A 41 SHEET 5 A 8 ILE A 2 LEU A 8 1 N SER A 3 O ILE A 91 SHEET 6 A 8 LYS A 109 ILE A 115 1 O TYR A 111 N LEU A 4 SHEET 7 A 8 TYR A 151 ARG A 158 -1 O GLU A 154 N LEU A 112 SHEET 8 A 8 TRP A 133 HIS A 141 -1 N GLU A 134 O GLU A 157 SHEET 1 B 2 VAL A 13 GLY A 15 0 SHEET 2 B 2 THR A 123 HIS A 124 -1 O THR A 123 N ILE A 14 SHEET 1 C 4 LEU D 4 SER D 7 0 SHEET 2 C 4 LEU D 18 ALA D 24 -1 O SER D 21 N SER D 7 SHEET 3 C 4 THR D 78 MET D 83 -1 O LEU D 81 N LEU D 20 SHEET 4 C 4 PHE D 68 ASP D 73 -1 N THR D 69 O GLN D 82 SHEET 1 D 6 LEU D 11 GLN D 13 0 SHEET 2 D 6 THR D 123 SER D 128 1 O THR D 126 N VAL D 12 SHEET 3 D 6 ALA D 92 ALA D 98 -1 N TYR D 94 O THR D 123 SHEET 4 D 6 MET D 34 GLN D 39 -1 N GLY D 35 O ALA D 97 SHEET 5 D 6 ARG D 45 ILE D 51 -1 O ALA D 49 N TRP D 36 SHEET 6 D 6 THR D 58 TYR D 60 -1 O TYR D 59 N VAL D 50 SHEET 1 E 4 LEU D 11 GLN D 13 0 SHEET 2 E 4 THR D 123 SER D 128 1 O THR D 126 N VAL D 12 SHEET 3 E 4 ALA D 92 ALA D 98 -1 N TYR D 94 O THR D 123 SHEET 4 E 4 TYR D 118 TRP D 119 -1 O TYR D 118 N ALA D 98 SSBOND 1 CYS D 22 CYS D 96 1555 1555 2.03 CISPEP 1 GLY A 95 GLY A 96 0 -2.42 SITE 1 AC1 14 ILE A 5 ALA A 6 ALA A 7 ASP A 27 SITE 2 AC1 14 LEU A 28 PHE A 31 LYS A 32 ILE A 50 SITE 3 AC1 14 ARG A 52 LEU A 54 ARG A 57 ILE A 94 SITE 4 AC1 14 THR A 113 NAP A 202 SITE 1 AC2 24 ALA A 6 ALA A 7 ILE A 14 MET A 16 SITE 2 AC2 24 GLY A 43 ARG A 44 HIS A 45 THR A 46 SITE 3 AC2 24 SER A 49 LEU A 62 SER A 63 SER A 64 SITE 4 AC2 24 GLN A 65 LYS A 76 VAL A 78 ILE A 94 SITE 5 AC2 24 GLY A 95 GLY A 96 GLY A 97 ARG A 98 SITE 6 AC2 24 TYR A 100 GLN A 102 THR A 123 FOL A 201 CRYST1 72.889 72.889 254.273 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013720 0.007921 0.000000 0.00000 SCALE2 0.000000 0.015842 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003933 0.00000