data_4FI9 # _entry.id 4FI9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4FI9 RCSB RCSB072934 WWPDB D_1000072934 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4FI9 _pdbx_database_status.recvd_initial_deposition_date 2012-06-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, W.J.' 1 'Shi, Z.B.' 2 # _citation.id primary _citation.title 'Structural insights into SUN-KASH complexes across the nuclear envelope.' _citation.journal_abbrev 'Cell Res.' _citation.journal_volume 22 _citation.page_first 1440 _citation.page_last 1452 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country CN _citation.journal_id_ISSN 1001-0602 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22945352 _citation.pdbx_database_id_DOI 10.1038/cr.2012.126 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Wang, W.' 1 primary 'Shi, Z.' 2 primary 'Jiao, S.' 3 primary 'Chen, C.' 4 primary 'Wang, H.' 5 primary 'Liu, G.' 6 primary 'Wang, Q.' 7 primary 'Zhao, Y.' 8 primary 'Greene, M.I.' 9 primary 'Zhou, Z.' 10 # _cell.entry_id 4FI9 _cell.length_a 79.835 _cell.length_b 79.835 _cell.length_c 280.221 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4FI9 _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'SUN domain-containing protein 2' 21925.600 1 ? ? 'SUN domain (unp residues 523-717)' ? 2 polymer syn Nesprin-2 1654.905 1 ? ? 'KASH domain (unp residues 6872-6883)' ? 3 water nat water 18.015 2 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Protein unc-84 homolog B, Rab5-interacting protein, Rab5IP, Sad1/unc-84 protein-like 2' 2 ;Nuclear envelope spectrin repeat protein 2, Nucleus and actin connecting element protein, Protein NUANCE, Synaptic nuclear envelope protein 2, Syne-2 ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;VTEEQVHHIVKQALQRYSEDRIGLADYALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDVHPGNCW AFQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAP TMATYQVVELRILTNWGHPEYTCIYRFRVHGEPAH ; ;VTEEQVHHIVKQALQRYSEDRIGLADYALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDVHPGNCW AFQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAP TMATYQVVELRILTNWGHPEYTCIYRFRVHGEPAH ; A ? 2 'polypeptide(L)' no no FYPMLRYTNGPPPT FYPMLRYTNGPPPT B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 THR n 1 3 GLU n 1 4 GLU n 1 5 GLN n 1 6 VAL n 1 7 HIS n 1 8 HIS n 1 9 ILE n 1 10 VAL n 1 11 LYS n 1 12 GLN n 1 13 ALA n 1 14 LEU n 1 15 GLN n 1 16 ARG n 1 17 TYR n 1 18 SER n 1 19 GLU n 1 20 ASP n 1 21 ARG n 1 22 ILE n 1 23 GLY n 1 24 LEU n 1 25 ALA n 1 26 ASP n 1 27 TYR n 1 28 ALA n 1 29 LEU n 1 30 GLU n 1 31 SER n 1 32 GLY n 1 33 GLY n 1 34 ALA n 1 35 SER n 1 36 VAL n 1 37 ILE n 1 38 SER n 1 39 THR n 1 40 ARG n 1 41 CYS n 1 42 SER n 1 43 GLU n 1 44 THR n 1 45 TYR n 1 46 GLU n 1 47 THR n 1 48 LYS n 1 49 THR n 1 50 ALA n 1 51 LEU n 1 52 LEU n 1 53 SER n 1 54 LEU n 1 55 PHE n 1 56 GLY n 1 57 ILE n 1 58 PRO n 1 59 LEU n 1 60 TRP n 1 61 TYR n 1 62 HIS n 1 63 SER n 1 64 GLN n 1 65 SER n 1 66 PRO n 1 67 ARG n 1 68 VAL n 1 69 ILE n 1 70 LEU n 1 71 GLN n 1 72 PRO n 1 73 ASP n 1 74 VAL n 1 75 HIS n 1 76 PRO n 1 77 GLY n 1 78 ASN n 1 79 CYS n 1 80 TRP n 1 81 ALA n 1 82 PHE n 1 83 GLN n 1 84 GLY n 1 85 PRO n 1 86 GLN n 1 87 GLY n 1 88 PHE n 1 89 ALA n 1 90 VAL n 1 91 VAL n 1 92 ARG n 1 93 LEU n 1 94 SER n 1 95 ALA n 1 96 ARG n 1 97 ILE n 1 98 ARG n 1 99 PRO n 1 100 THR n 1 101 ALA n 1 102 VAL n 1 103 THR n 1 104 LEU n 1 105 GLU n 1 106 HIS n 1 107 VAL n 1 108 PRO n 1 109 LYS n 1 110 ALA n 1 111 LEU n 1 112 SER n 1 113 PRO n 1 114 ASN n 1 115 SER n 1 116 THR n 1 117 ILE n 1 118 SER n 1 119 SER n 1 120 ALA n 1 121 PRO n 1 122 LYS n 1 123 ASP n 1 124 PHE n 1 125 ALA n 1 126 ILE n 1 127 PHE n 1 128 GLY n 1 129 PHE n 1 130 ASP n 1 131 GLU n 1 132 ASP n 1 133 LEU n 1 134 GLN n 1 135 GLN n 1 136 GLU n 1 137 GLY n 1 138 THR n 1 139 LEU n 1 140 LEU n 1 141 GLY n 1 142 LYS n 1 143 PHE n 1 144 THR n 1 145 TYR n 1 146 ASP n 1 147 GLN n 1 148 ASP n 1 149 GLY n 1 150 GLU n 1 151 PRO n 1 152 ILE n 1 153 GLN n 1 154 THR n 1 155 PHE n 1 156 HIS n 1 157 PHE n 1 158 GLN n 1 159 ALA n 1 160 PRO n 1 161 THR n 1 162 MET n 1 163 ALA n 1 164 THR n 1 165 TYR n 1 166 GLN n 1 167 VAL n 1 168 VAL n 1 169 GLU n 1 170 LEU n 1 171 ARG n 1 172 ILE n 1 173 LEU n 1 174 THR n 1 175 ASN n 1 176 TRP n 1 177 GLY n 1 178 HIS n 1 179 PRO n 1 180 GLU n 1 181 TYR n 1 182 THR n 1 183 CYS n 1 184 ILE n 1 185 TYR n 1 186 ARG n 1 187 PHE n 1 188 ARG n 1 189 VAL n 1 190 HIS n 1 191 GLY n 1 192 GLU n 1 193 PRO n 1 194 ALA n 1 195 HIS n 2 1 PHE n 2 2 TYR n 2 3 PRO n 2 4 MET n 2 5 LEU n 2 6 ARG n 2 7 TYR n 2 8 THR n 2 9 ASN n 2 10 GLY n 2 11 PRO n 2 12 PRO n 2 13 PRO n 2 14 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SUN2, FRIGG, KIAA0668, RAB5IP, UNC84B' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'This sequence occurs naturally in humans.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SUN2_HUMAN Q9UH99 1 ;VTEEQVHHIVKQALQRYSEDRIGLADYALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDVHPGNCW AFQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAP TMATYQVVELRILTNWGHPEYTCIYRFRVHGEPAH ; 523 ? 2 UNP SYNE2_HUMAN Q8WXH0 2 FYPMLRYTNGPPPT 6872 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4FI9 A 1 ? 195 ? Q9UH99 523 ? 717 ? 523 717 2 2 4FI9 B 1 ? 14 ? Q8WXH0 6872 ? 6885 ? 6872 6885 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4FI9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.64 _exptl_crystal.density_percent_sol 66.25 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '50 mM MgCl2, 100 mM HEPES, 6% PEG5000 mme, 19.5 mM HECAMEG, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 297K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2012-03-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97915 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.pdbx_synchrotron_site SSRF _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97915 # _reflns.entry_id 4FI9 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 3.05 _reflns.number_obs 6763 _reflns.number_all 6908 _reflns.percent_possible_obs 97.9 _reflns.pdbx_Rmerge_I_obs 0.120 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 21.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.05 _reflns_shell.d_res_low 3.10 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.248 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.5 _reflns_shell.pdbx_redundancy 6.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 325 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4FI9 _refine.ls_number_reflns_obs 6421 _refine.ls_number_reflns_all 6582 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 3.05 _refine.ls_percent_reflns_obs 97.55 _refine.ls_R_factor_obs 0.24381 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.24051 _refine.ls_R_factor_R_free 0.31031 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 322 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.909 _refine.correlation_coeff_Fo_to_Fc_free 0.856 _refine.B_iso_mean 96.194 _refine.aniso_B[1][1] -4.47 _refine.aniso_B[2][2] -4.47 _refine.aniso_B[3][3] 6.70 _refine.aniso_B[1][2] -2.23 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 30.103 _refine.pdbx_overall_ESU_R_Free 0.485 _refine.overall_SU_ML 0.411 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 48.825 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1603 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 1605 _refine_hist.d_res_high 3.05 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.010 0.021 ? 1654 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.338 1.938 ? 2268 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.781 5.000 ? 207 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 34.186 23.056 ? 72 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 20.091 15.000 ? 223 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 9.245 15.000 ? 9 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.106 0.200 ? 250 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.006 0.022 ? 1303 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 0.412 1.500 ? 1047 ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it 0.803 2.000 ? 1688 ? 'X-RAY DIFFRACTION' r_scbond_it 1.076 3.000 ? 607 ? 'X-RAY DIFFRACTION' r_scangle_it 1.928 4.500 ? 580 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.048 _refine_ls_shell.d_res_low 3.127 _refine_ls_shell.number_reflns_R_work 470 _refine_ls_shell.R_factor_R_work 0.283 _refine_ls_shell.percent_reflns_obs 98.59 _refine_ls_shell.R_factor_R_free 0.268 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 21 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 470 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4FI9 _struct.title 'Structure of human SUN-KASH complex' _struct.pdbx_descriptor 'SUN domain-containing protein 2, Nesprin-2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4FI9 _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'LINC complex, Transmembrane protein, PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 2 ? SER A 18 ? THR A 524 SER A 540 1 ? 17 HELX_P HELX_P2 2 SER A 65 ? GLN A 71 ? SER A 587 GLN A 593 5 ? 7 HELX_P HELX_P3 3 PRO A 108 ? THR A 116 ? PRO A 630 THR A 638 5 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 79 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 183 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 601 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 705 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.074 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 3 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 35 ? VAL A 36 ? SER A 557 VAL A 558 A 2 GLY A 87 ? GLU A 105 ? GLY A 609 GLU A 627 A 3 ILE A 152 ? HIS A 156 ? ILE A 674 HIS A 678 B 1 THR A 138 ? THR A 144 ? THR A 660 THR A 666 B 2 ASP A 123 ? PHE A 129 ? ASP A 645 PHE A 651 B 3 TYR A 165 ? ILE A 172 ? TYR A 687 ILE A 694 B 4 GLY A 87 ? GLU A 105 ? GLY A 609 GLU A 627 B 5 ARG A 186 ? PRO A 193 ? ARG A 708 PRO A 715 C 1 ILE A 57 ? TYR A 61 ? ILE A 579 TYR A 583 C 2 ALA A 50 ? LEU A 54 ? ALA A 572 LEU A 576 C 3 MET B 4 ? TYR B 7 ? MET B 6875 TYR B 6878 D 1 TRP A 80 ? GLN A 83 ? TRP A 602 GLN A 605 D 2 TYR A 181 ? ILE A 184 ? TYR A 703 ILE A 706 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 35 ? N SER A 557 O ARG A 92 ? O ARG A 614 A 2 3 N VAL A 102 ? N VAL A 624 O PHE A 155 ? O PHE A 677 B 1 2 O LEU A 140 ? O LEU A 662 N ILE A 126 ? N ILE A 648 B 2 3 N PHE A 127 ? N PHE A 649 O GLU A 169 ? O GLU A 691 B 3 4 O GLN A 166 ? O GLN A 688 N LEU A 93 ? N LEU A 615 B 4 5 N THR A 103 ? N THR A 625 O ARG A 188 ? O ARG A 710 C 1 2 O TRP A 60 ? O TRP A 582 N LEU A 52 ? N LEU A 574 C 2 3 N LEU A 51 ? N LEU A 573 O ARG B 6 ? O ARG B 6877 D 1 2 N TRP A 80 ? N TRP A 602 O ILE A 184 ? O ILE A 706 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 23 _struct_site.details 'BINDING SITE FOR CHAIN B OF NESPRIN-2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 23 GLU A 30 ? GLU A 552 . ? 3_545 ? 2 AC1 23 SER A 31 ? SER A 553 . ? 3_545 ? 3 AC1 23 GLY A 32 ? GLY A 554 . ? 3_545 ? 4 AC1 23 GLY A 33 ? GLY A 555 . ? 3_545 ? 5 AC1 23 ALA A 34 ? ALA A 556 . ? 3_545 ? 6 AC1 23 SER A 35 ? SER A 557 . ? 3_545 ? 7 AC1 23 VAL A 36 ? VAL A 558 . ? 3_545 ? 8 AC1 23 SER A 38 ? SER A 560 . ? 3_545 ? 9 AC1 23 LYS A 48 ? LYS A 570 . ? 1_555 ? 10 AC1 23 THR A 49 ? THR A 571 . ? 1_555 ? 11 AC1 23 ALA A 50 ? ALA A 572 . ? 1_555 ? 12 AC1 23 LEU A 51 ? LEU A 573 . ? 1_555 ? 13 AC1 23 LEU A 52 ? LEU A 574 . ? 1_555 ? 14 AC1 23 SER A 53 ? SER A 575 . ? 1_555 ? 15 AC1 23 TRP A 60 ? TRP A 582 . ? 3_545 ? 16 AC1 23 TYR A 61 ? TYR A 583 . ? 1_555 ? 17 AC1 23 ARG A 67 ? ARG A 589 . ? 3_545 ? 18 AC1 23 GLY A 77 ? GLY A 599 . ? 1_555 ? 19 AC1 23 CYS A 79 ? CYS A 601 . ? 1_555 ? 20 AC1 23 SER A 119 ? SER A 641 . ? 1_555 ? 21 AC1 23 TYR A 181 ? TYR A 703 . ? 1_555 ? 22 AC1 23 CYS A 183 ? CYS A 705 . ? 1_555 ? 23 AC1 23 TYR A 185 ? TYR A 707 . ? 1_555 ? # _database_PDB_matrix.entry_id 4FI9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4FI9 _atom_sites.fract_transf_matrix[1][1] 0.012526 _atom_sites.fract_transf_matrix[1][2] 0.007232 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014464 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003569 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 523 523 VAL VAL A . n A 1 2 THR 2 524 524 THR THR A . n A 1 3 GLU 3 525 525 GLU GLU A . n A 1 4 GLU 4 526 526 GLU GLU A . n A 1 5 GLN 5 527 527 GLN GLN A . n A 1 6 VAL 6 528 528 VAL VAL A . n A 1 7 HIS 7 529 529 HIS HIS A . n A 1 8 HIS 8 530 530 HIS HIS A . n A 1 9 ILE 9 531 531 ILE ILE A . n A 1 10 VAL 10 532 532 VAL VAL A . n A 1 11 LYS 11 533 533 LYS LYS A . n A 1 12 GLN 12 534 534 GLN GLN A . n A 1 13 ALA 13 535 535 ALA ALA A . n A 1 14 LEU 14 536 536 LEU LEU A . n A 1 15 GLN 15 537 537 GLN GLN A . n A 1 16 ARG 16 538 538 ARG ARG A . n A 1 17 TYR 17 539 539 TYR TYR A . n A 1 18 SER 18 540 540 SER SER A . n A 1 19 GLU 19 541 541 GLU GLU A . n A 1 20 ASP 20 542 542 ASP ASP A . n A 1 21 ARG 21 543 543 ARG ARG A . n A 1 22 ILE 22 544 544 ILE ILE A . n A 1 23 GLY 23 545 545 GLY GLY A . n A 1 24 LEU 24 546 546 LEU LEU A . n A 1 25 ALA 25 547 547 ALA ALA A . n A 1 26 ASP 26 548 548 ASP ASP A . n A 1 27 TYR 27 549 549 TYR TYR A . n A 1 28 ALA 28 550 550 ALA ALA A . n A 1 29 LEU 29 551 551 LEU LEU A . n A 1 30 GLU 30 552 552 GLU GLU A . n A 1 31 SER 31 553 553 SER SER A . n A 1 32 GLY 32 554 554 GLY GLY A . n A 1 33 GLY 33 555 555 GLY GLY A . n A 1 34 ALA 34 556 556 ALA ALA A . n A 1 35 SER 35 557 557 SER SER A . n A 1 36 VAL 36 558 558 VAL VAL A . n A 1 37 ILE 37 559 559 ILE ILE A . n A 1 38 SER 38 560 560 SER SER A . n A 1 39 THR 39 561 561 THR THR A . n A 1 40 ARG 40 562 562 ARG ARG A . n A 1 41 CYS 41 563 563 CYS CYS A . n A 1 42 SER 42 564 564 SER SER A . n A 1 43 GLU 43 565 565 GLU GLU A . n A 1 44 THR 44 566 566 THR THR A . n A 1 45 TYR 45 567 567 TYR TYR A . n A 1 46 GLU 46 568 568 GLU GLU A . n A 1 47 THR 47 569 569 THR THR A . n A 1 48 LYS 48 570 570 LYS LYS A . n A 1 49 THR 49 571 571 THR THR A . n A 1 50 ALA 50 572 572 ALA ALA A . n A 1 51 LEU 51 573 573 LEU LEU A . n A 1 52 LEU 52 574 574 LEU LEU A . n A 1 53 SER 53 575 575 SER SER A . n A 1 54 LEU 54 576 576 LEU LEU A . n A 1 55 PHE 55 577 577 PHE PHE A . n A 1 56 GLY 56 578 578 GLY GLY A . n A 1 57 ILE 57 579 579 ILE ILE A . n A 1 58 PRO 58 580 580 PRO PRO A . n A 1 59 LEU 59 581 581 LEU LEU A . n A 1 60 TRP 60 582 582 TRP TRP A . n A 1 61 TYR 61 583 583 TYR TYR A . n A 1 62 HIS 62 584 584 HIS HIS A . n A 1 63 SER 63 585 585 SER SER A . n A 1 64 GLN 64 586 586 GLN GLN A . n A 1 65 SER 65 587 587 SER SER A . n A 1 66 PRO 66 588 588 PRO PRO A . n A 1 67 ARG 67 589 589 ARG ARG A . n A 1 68 VAL 68 590 590 VAL VAL A . n A 1 69 ILE 69 591 591 ILE ILE A . n A 1 70 LEU 70 592 592 LEU LEU A . n A 1 71 GLN 71 593 593 GLN GLN A . n A 1 72 PRO 72 594 594 PRO PRO A . n A 1 73 ASP 73 595 595 ASP ASP A . n A 1 74 VAL 74 596 596 VAL VAL A . n A 1 75 HIS 75 597 597 HIS HIS A . n A 1 76 PRO 76 598 598 PRO PRO A . n A 1 77 GLY 77 599 599 GLY GLY A . n A 1 78 ASN 78 600 600 ASN ASN A . n A 1 79 CYS 79 601 601 CYS CYS A . n A 1 80 TRP 80 602 602 TRP TRP A . n A 1 81 ALA 81 603 603 ALA ALA A . n A 1 82 PHE 82 604 604 PHE PHE A . n A 1 83 GLN 83 605 605 GLN GLN A . n A 1 84 GLY 84 606 606 GLY GLY A . n A 1 85 PRO 85 607 607 PRO PRO A . n A 1 86 GLN 86 608 608 GLN GLN A . n A 1 87 GLY 87 609 609 GLY GLY A . n A 1 88 PHE 88 610 610 PHE PHE A . n A 1 89 ALA 89 611 611 ALA ALA A . n A 1 90 VAL 90 612 612 VAL VAL A . n A 1 91 VAL 91 613 613 VAL VAL A . n A 1 92 ARG 92 614 614 ARG ARG A . n A 1 93 LEU 93 615 615 LEU LEU A . n A 1 94 SER 94 616 616 SER SER A . n A 1 95 ALA 95 617 617 ALA ALA A . n A 1 96 ARG 96 618 618 ARG ARG A . n A 1 97 ILE 97 619 619 ILE ILE A . n A 1 98 ARG 98 620 620 ARG ARG A . n A 1 99 PRO 99 621 621 PRO PRO A . n A 1 100 THR 100 622 622 THR THR A . n A 1 101 ALA 101 623 623 ALA ALA A . n A 1 102 VAL 102 624 624 VAL VAL A . n A 1 103 THR 103 625 625 THR THR A . n A 1 104 LEU 104 626 626 LEU LEU A . n A 1 105 GLU 105 627 627 GLU GLU A . n A 1 106 HIS 106 628 628 HIS HIS A . n A 1 107 VAL 107 629 629 VAL VAL A . n A 1 108 PRO 108 630 630 PRO PRO A . n A 1 109 LYS 109 631 631 LYS LYS A . n A 1 110 ALA 110 632 632 ALA ALA A . n A 1 111 LEU 111 633 633 LEU LEU A . n A 1 112 SER 112 634 634 SER SER A . n A 1 113 PRO 113 635 635 PRO PRO A . n A 1 114 ASN 114 636 636 ASN ASN A . n A 1 115 SER 115 637 637 SER SER A . n A 1 116 THR 116 638 638 THR THR A . n A 1 117 ILE 117 639 639 ILE ILE A . n A 1 118 SER 118 640 640 SER SER A . n A 1 119 SER 119 641 641 SER SER A . n A 1 120 ALA 120 642 642 ALA ALA A . n A 1 121 PRO 121 643 643 PRO PRO A . n A 1 122 LYS 122 644 644 LYS LYS A . n A 1 123 ASP 123 645 645 ASP ASP A . n A 1 124 PHE 124 646 646 PHE PHE A . n A 1 125 ALA 125 647 647 ALA ALA A . n A 1 126 ILE 126 648 648 ILE ILE A . n A 1 127 PHE 127 649 649 PHE PHE A . n A 1 128 GLY 128 650 650 GLY GLY A . n A 1 129 PHE 129 651 651 PHE PHE A . n A 1 130 ASP 130 652 652 ASP ASP A . n A 1 131 GLU 131 653 653 GLU GLU A . n A 1 132 ASP 132 654 654 ASP ASP A . n A 1 133 LEU 133 655 655 LEU LEU A . n A 1 134 GLN 134 656 656 GLN GLN A . n A 1 135 GLN 135 657 657 GLN GLN A . n A 1 136 GLU 136 658 658 GLU GLU A . n A 1 137 GLY 137 659 659 GLY GLY A . n A 1 138 THR 138 660 660 THR THR A . n A 1 139 LEU 139 661 661 LEU LEU A . n A 1 140 LEU 140 662 662 LEU LEU A . n A 1 141 GLY 141 663 663 GLY GLY A . n A 1 142 LYS 142 664 664 LYS LYS A . n A 1 143 PHE 143 665 665 PHE PHE A . n A 1 144 THR 144 666 666 THR THR A . n A 1 145 TYR 145 667 667 TYR TYR A . n A 1 146 ASP 146 668 668 ASP ASP A . n A 1 147 GLN 147 669 669 GLN GLN A . n A 1 148 ASP 148 670 670 ASP ASP A . n A 1 149 GLY 149 671 671 GLY GLY A . n A 1 150 GLU 150 672 672 GLU GLU A . n A 1 151 PRO 151 673 673 PRO PRO A . n A 1 152 ILE 152 674 674 ILE ILE A . n A 1 153 GLN 153 675 675 GLN GLN A . n A 1 154 THR 154 676 676 THR THR A . n A 1 155 PHE 155 677 677 PHE PHE A . n A 1 156 HIS 156 678 678 HIS HIS A . n A 1 157 PHE 157 679 679 PHE PHE A . n A 1 158 GLN 158 680 680 GLN GLN A . n A 1 159 ALA 159 681 681 ALA ALA A . n A 1 160 PRO 160 682 682 PRO PRO A . n A 1 161 THR 161 683 683 THR THR A . n A 1 162 MET 162 684 684 MET MET A . n A 1 163 ALA 163 685 685 ALA ALA A . n A 1 164 THR 164 686 686 THR THR A . n A 1 165 TYR 165 687 687 TYR TYR A . n A 1 166 GLN 166 688 688 GLN GLN A . n A 1 167 VAL 167 689 689 VAL VAL A . n A 1 168 VAL 168 690 690 VAL VAL A . n A 1 169 GLU 169 691 691 GLU GLU A . n A 1 170 LEU 170 692 692 LEU LEU A . n A 1 171 ARG 171 693 693 ARG ARG A . n A 1 172 ILE 172 694 694 ILE ILE A . n A 1 173 LEU 173 695 695 LEU LEU A . n A 1 174 THR 174 696 696 THR THR A . n A 1 175 ASN 175 697 697 ASN ASN A . n A 1 176 TRP 176 698 698 TRP TRP A . n A 1 177 GLY 177 699 699 GLY GLY A . n A 1 178 HIS 178 700 700 HIS HIS A . n A 1 179 PRO 179 701 701 PRO PRO A . n A 1 180 GLU 180 702 702 GLU GLU A . n A 1 181 TYR 181 703 703 TYR TYR A . n A 1 182 THR 182 704 704 THR THR A . n A 1 183 CYS 183 705 705 CYS CYS A . n A 1 184 ILE 184 706 706 ILE ILE A . n A 1 185 TYR 185 707 707 TYR TYR A . n A 1 186 ARG 186 708 708 ARG ARG A . n A 1 187 PHE 187 709 709 PHE PHE A . n A 1 188 ARG 188 710 710 ARG ARG A . n A 1 189 VAL 189 711 711 VAL VAL A . n A 1 190 HIS 190 712 712 HIS HIS A . n A 1 191 GLY 191 713 713 GLY GLY A . n A 1 192 GLU 192 714 714 GLU GLU A . n A 1 193 PRO 193 715 715 PRO PRO A . n A 1 194 ALA 194 716 716 ALA ALA A . n A 1 195 HIS 195 717 717 HIS HIS A . n B 2 1 PHE 1 6872 6872 PHE PHE B . n B 2 2 TYR 2 6873 6873 TYR TYR B . n B 2 3 PRO 3 6874 6874 PRO PRO B . n B 2 4 MET 4 6875 6875 MET MET B . n B 2 5 LEU 5 6876 6876 LEU LEU B . n B 2 6 ARG 6 6877 6877 ARG ARG B . n B 2 7 TYR 7 6878 6878 TYR TYR B . n B 2 8 THR 8 6879 6879 THR THR B . n B 2 9 ASN 9 6880 6880 ASN ASN B . n B 2 10 GLY 10 6881 6881 GLY GLY B . n B 2 11 PRO 11 6882 6882 PRO PRO B . n B 2 12 PRO 12 6883 6883 PRO PRO B . n B 2 13 PRO 13 6884 6884 PRO PRO B . n B 2 14 THR 14 6885 6885 THR THR B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 801 801 HOH HOH A . C 3 HOH 2 802 802 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 11010 ? 1 MORE -65 ? 1 'SSA (A^2)' 28180 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5000000000 -0.8660254038 0.0000000000 -39.9175000000 0.8660254038 -0.5000000000 0.0000000000 -69.1391381111 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5000000000 0.8660254038 0.0000000000 39.9175000000 -0.8660254038 -0.5000000000 0.0000000000 -69.1391381111 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-07-18 2 'Structure model' 1 1 2013-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -6.8124 _pdbx_refine_tls.origin_y -30.5801 _pdbx_refine_tls.origin_z -14.0200 _pdbx_refine_tls.T[1][1] 0.1826 _pdbx_refine_tls.T[2][2] 0.0161 _pdbx_refine_tls.T[3][3] 0.1450 _pdbx_refine_tls.T[1][2] 0.0763 _pdbx_refine_tls.T[1][3] -0.0124 _pdbx_refine_tls.T[2][3] 0.0148 _pdbx_refine_tls.L[1][1] 2.7454 _pdbx_refine_tls.L[2][2] 3.0235 _pdbx_refine_tls.L[3][3] 3.8398 _pdbx_refine_tls.L[1][2] -0.0366 _pdbx_refine_tls.L[1][3] 0.6010 _pdbx_refine_tls.L[2][3] -1.1090 _pdbx_refine_tls.S[1][1] -0.0453 _pdbx_refine_tls.S[1][2] 0.4489 _pdbx_refine_tls.S[1][3] 0.2740 _pdbx_refine_tls.S[2][1] -0.2742 _pdbx_refine_tls.S[2][2] 0.0577 _pdbx_refine_tls.S[2][3] 0.0951 _pdbx_refine_tls.S[3][1] -0.5532 _pdbx_refine_tls.S[3][2] -0.1881 _pdbx_refine_tls.S[3][3] -0.0124 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 523 A 717 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 A 801 A 802 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 PHENIX 'model building' . ? 2 REFMAC refinement 5.5.0109 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 541 ? ? -96.34 59.16 2 1 ARG A 543 ? ? 80.86 -36.58 3 1 SER A 560 ? ? 82.20 -62.72 4 1 CYS A 563 ? ? 115.88 128.42 5 1 SER A 564 ? ? -31.67 157.24 6 1 PHE A 577 ? ? 35.88 24.23 7 1 LEU A 581 ? ? -113.34 -71.20 8 1 ASN A 600 ? ? -78.66 43.91 9 1 LYS A 644 ? ? -102.45 -97.02 10 1 GLU A 653 ? ? 174.97 -4.60 11 1 ASP A 654 ? ? 63.61 160.23 12 1 LEU A 655 ? ? 55.56 88.99 13 1 GLN A 656 ? ? 93.06 -63.22 14 1 GLN A 657 ? ? -28.99 -34.91 15 1 GLU A 658 ? ? 145.79 -9.84 16 1 ALA A 681 ? ? 50.50 74.06 17 1 ASN A 697 ? ? -118.24 -167.62 18 1 ASN B 6880 ? ? -87.42 -143.39 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 LEU _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 655 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLN _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 656 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 141.25 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 534 ? CG ? A GLN 12 CG 2 1 Y 1 A GLN 534 ? CD ? A GLN 12 CD 3 1 Y 1 A GLN 534 ? OE1 ? A GLN 12 OE1 4 1 Y 1 A GLN 534 ? NE2 ? A GLN 12 NE2 5 1 Y 1 A ARG 562 ? CG ? A ARG 40 CG 6 1 Y 1 A ARG 562 ? CD ? A ARG 40 CD 7 1 Y 1 A ARG 562 ? NE ? A ARG 40 NE 8 1 Y 1 A ARG 562 ? CZ ? A ARG 40 CZ 9 1 Y 1 A ARG 562 ? NH1 ? A ARG 40 NH1 10 1 Y 1 A ARG 562 ? NH2 ? A ARG 40 NH2 11 1 Y 1 A GLU 565 ? CG ? A GLU 43 CG 12 1 Y 1 A GLU 565 ? CD ? A GLU 43 CD 13 1 Y 1 A GLU 565 ? OE1 ? A GLU 43 OE1 14 1 Y 1 A GLU 565 ? OE2 ? A GLU 43 OE2 15 1 Y 1 A GLU 568 ? CG ? A GLU 46 CG 16 1 Y 1 A GLU 568 ? CD ? A GLU 46 CD 17 1 Y 1 A GLU 568 ? OE1 ? A GLU 46 OE1 18 1 Y 1 A GLU 568 ? OE2 ? A GLU 46 OE2 19 1 Y 1 A LYS 570 ? CG ? A LYS 48 CG 20 1 Y 1 A LYS 570 ? CD ? A LYS 48 CD 21 1 Y 1 A LYS 570 ? CE ? A LYS 48 CE 22 1 Y 1 A LYS 570 ? NZ ? A LYS 48 NZ 23 1 Y 1 A LEU 573 ? CG ? A LEU 51 CG 24 1 Y 1 A LEU 573 ? CD1 ? A LEU 51 CD1 25 1 Y 1 A LEU 573 ? CD2 ? A LEU 51 CD2 26 1 Y 1 A LEU 574 ? CG ? A LEU 52 CG 27 1 Y 1 A LEU 574 ? CD1 ? A LEU 52 CD1 28 1 Y 1 A LEU 574 ? CD2 ? A LEU 52 CD2 29 1 Y 1 A LEU 576 ? CG ? A LEU 54 CG 30 1 Y 1 A LEU 576 ? CD1 ? A LEU 54 CD1 31 1 Y 1 A LEU 576 ? CD2 ? A LEU 54 CD2 32 1 Y 1 A PHE 577 ? CG ? A PHE 55 CG 33 1 Y 1 A PHE 577 ? CD1 ? A PHE 55 CD1 34 1 Y 1 A PHE 577 ? CD2 ? A PHE 55 CD2 35 1 Y 1 A PHE 577 ? CE1 ? A PHE 55 CE1 36 1 Y 1 A PHE 577 ? CE2 ? A PHE 55 CE2 37 1 Y 1 A PHE 577 ? CZ ? A PHE 55 CZ 38 1 Y 1 A ARG 614 ? CG ? A ARG 92 CG 39 1 Y 1 A ARG 614 ? CD ? A ARG 92 CD 40 1 Y 1 A ARG 614 ? NE ? A ARG 92 NE 41 1 Y 1 A ARG 614 ? CZ ? A ARG 92 CZ 42 1 Y 1 A ARG 614 ? NH1 ? A ARG 92 NH1 43 1 Y 1 A ARG 614 ? NH2 ? A ARG 92 NH2 44 1 Y 1 A LYS 631 ? CE ? A LYS 109 CE 45 1 Y 1 A LYS 631 ? NZ ? A LYS 109 NZ 46 1 Y 1 A ASP 652 ? CG ? A ASP 130 CG 47 1 Y 1 A ASP 652 ? OD1 ? A ASP 130 OD1 48 1 Y 1 A ASP 652 ? OD2 ? A ASP 130 OD2 49 1 Y 1 A ASP 654 ? CG ? A ASP 132 CG 50 1 Y 1 A ASP 654 ? OD1 ? A ASP 132 OD1 51 1 Y 1 A ASP 654 ? OD2 ? A ASP 132 OD2 52 1 Y 1 A LYS 664 ? CG ? A LYS 142 CG 53 1 Y 1 A LYS 664 ? CD ? A LYS 142 CD 54 1 Y 1 A LYS 664 ? CE ? A LYS 142 CE 55 1 Y 1 A LYS 664 ? NZ ? A LYS 142 NZ 56 1 Y 1 A GLU 702 ? CG ? A GLU 180 CG 57 1 Y 1 A GLU 702 ? CD ? A GLU 180 CD 58 1 Y 1 A GLU 702 ? OE1 ? A GLU 180 OE1 59 1 Y 1 A GLU 702 ? OE2 ? A GLU 180 OE2 60 1 Y 1 A GLU 714 ? CG ? A GLU 192 CG 61 1 Y 1 A GLU 714 ? CD ? A GLU 192 CD 62 1 Y 1 A GLU 714 ? OE1 ? A GLU 192 OE1 63 1 Y 1 A GLU 714 ? OE2 ? A GLU 192 OE2 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #