data_4FIV # _entry.id 4FIV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4FIV pdb_00004fiv 10.2210/pdb4fiv/pdb WWPDB D_1000179318 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4FIV _pdbx_database_status.recvd_initial_deposition_date 1998-07-15 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kervinen, J.' 1 'Lubkowski, J.' 2 'Zdanov, A.' 3 'Wlodawer, A.' 4 'Gustchina, A.' 5 # _citation.id primary _citation.title ;Toward a universal inhibitor of retroviral proteases: comparative analysis of the interactions of LP-130 complexed with proteases from HIV-1, FIV, and EIAV. ; _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 7 _citation.page_first 2314 _citation.page_last 2323 _citation.year 1998 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9827997 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kervinen, J.' 1 ? primary 'Lubkowski, J.' 2 ? primary 'Zdanov, A.' 3 ? primary 'Bhatt, D.' 4 ? primary 'Dunn, B.M.' 5 ? primary 'Hui, K.Y.' 6 ? primary 'Powell, D.J.' 7 ? primary 'Kay, J.' 8 ? primary 'Wlodawer, A.' 9 ? primary 'Gustchina, A.' 10 ? # _cell.entry_id 4FIV _cell.length_a 50.650 _cell.length_b 50.650 _cell.length_c 74.500 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FIV _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'FELINE IMMUNODEFICIENCY VIRUS PROTEASE' 12842.825 1 3.4.23.16 ? ? ? 2 non-polymer syn ;4-[2-(2-ACETYLAMINO-3-NAPHTALEN-1-YL-PROPIONYLAMINO)-4-METHYL-PENTANOYLAMINO]-3-HYDROXY-6-METHYL-HEPTANOIC ACID [1-(1-CARBAMOYL-2-NAPHTHALEN-1-YL-ETHYLCARBAMOYL)-PROPYL]-AMIDE ; 794.978 1 ? ? ? ? 3 water nat water 18.015 92 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'FIV PR, RETROPEPSIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;VGTTTTLEKRPEILIFVNGYPIKFLLDTGADITILNRRDFQVKNSIENGRQNMIGVGGGKRGTNYINVHLEIRDENYKTQ CIFGNVCVLEDNSLIQPLLGRDNMIKFNIRLVM ; _entity_poly.pdbx_seq_one_letter_code_can ;VGTTTTLEKRPEILIFVNGYPIKFLLDTGADITILNRRDFQVKNSIENGRQNMIGVGGGKRGTNYINVHLEIRDENYKTQ CIFGNVCVLEDNSLIQPLLGRDNMIKFNIRLVM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 GLY n 1 3 THR n 1 4 THR n 1 5 THR n 1 6 THR n 1 7 LEU n 1 8 GLU n 1 9 LYS n 1 10 ARG n 1 11 PRO n 1 12 GLU n 1 13 ILE n 1 14 LEU n 1 15 ILE n 1 16 PHE n 1 17 VAL n 1 18 ASN n 1 19 GLY n 1 20 TYR n 1 21 PRO n 1 22 ILE n 1 23 LYS n 1 24 PHE n 1 25 LEU n 1 26 LEU n 1 27 ASP n 1 28 THR n 1 29 GLY n 1 30 ALA n 1 31 ASP n 1 32 ILE n 1 33 THR n 1 34 ILE n 1 35 LEU n 1 36 ASN n 1 37 ARG n 1 38 ARG n 1 39 ASP n 1 40 PHE n 1 41 GLN n 1 42 VAL n 1 43 LYS n 1 44 ASN n 1 45 SER n 1 46 ILE n 1 47 GLU n 1 48 ASN n 1 49 GLY n 1 50 ARG n 1 51 GLN n 1 52 ASN n 1 53 MET n 1 54 ILE n 1 55 GLY n 1 56 VAL n 1 57 GLY n 1 58 GLY n 1 59 GLY n 1 60 LYS n 1 61 ARG n 1 62 GLY n 1 63 THR n 1 64 ASN n 1 65 TYR n 1 66 ILE n 1 67 ASN n 1 68 VAL n 1 69 HIS n 1 70 LEU n 1 71 GLU n 1 72 ILE n 1 73 ARG n 1 74 ASP n 1 75 GLU n 1 76 ASN n 1 77 TYR n 1 78 LYS n 1 79 THR n 1 80 GLN n 1 81 CYS n 1 82 ILE n 1 83 PHE n 1 84 GLY n 1 85 ASN n 1 86 VAL n 1 87 CYS n 1 88 VAL n 1 89 LEU n 1 90 GLU n 1 91 ASP n 1 92 ASN n 1 93 SER n 1 94 LEU n 1 95 ILE n 1 96 GLN n 1 97 PRO n 1 98 LEU n 1 99 LEU n 1 100 GLY n 1 101 ARG n 1 102 ASP n 1 103 ASN n 1 104 MET n 1 105 ILE n 1 106 LYS n 1 107 PHE n 1 108 ASN n 1 109 ILE n 1 110 ARG n 1 111 LEU n 1 112 VAL n 1 113 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Lentivirus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Feline immunodeficiency virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11673 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PETALUMA _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_FIVPE _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P16088 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;KEFGKLEGGASCSPSESNAASSNAICTSNGGETIGFVNYNKVGTTTTLEKRPEILIFVNGYPIKFLLDTGADITILNRRD FQVKNSIENGRQNMIGVGGGKRGTNYINVHLEIRDENYKTQCIFGNVCVLEDNSLIQPLLGRDNMIKFNIRLVMAQISDK IPVVKVKMKDPNKGPQIKQWPLTNEKIEALTEIVERLEKEGKVKRADSNNPWNTPVFAIKKKSGKWRMLIDFRELNKLTE KGAEVQLGLPHPAGLQIKKQVTVLDIGDAYFTIPLDPDYAPYTAFTLPRKNNAGPGRRFVWCSLPQGWILSPLIYQSTLD NIIQPFIRQNPQLDIYQYMDDIYIGSNLSKKEHKEKVEELRKLLLWWGFETPEDKLQEEPPYTWMGYELHPLTWTIQQKQ LDIPEQPTLNELQKLAGKINWASQAIPDLSIKALTNMMRGNQNLNSTRQWTKEARLEVQKAKKAIEEQVQLGYYDPSKEL YAKLSLVGPHQISYQVYQKDPEKILWYGKMSRQKKKAENTCDIALRACYKIREESIIRIGKEPRYEIPTSREAWESNLIN SPYLKAPPPEVEYIHAALNIKRALSMIKDAPIPGAETWYIDGGRKLGKAAKAAYWTDTGKWRVMDLEGSNQKAEIQALLL ALKAGSEEMNIITDSQYVINIILQQPDMMEGIWQEVLEELEKKTAIFIDWVPGHKGIPGNEEVDKLCQTMMIIEGDGILD KRSEDAGYDLLAAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLGGVIDEGYRGEIGVIMINVSRKSI TLMERQKIAQLIILPCKHEVLEQGKVVMDSERGDNGYGSTGVFSSWVDRIEEAEINHEKFHSDPQYLRTEFNLPKMVAEE IRRKCPVCRIIGEQVGGQLKIGPGIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQT DNGPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAVHSLNFKRRGRIGGMA PYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPMRVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALP EGDE ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4FIV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 113 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P16088 _struct_ref_seq.db_align_beg 42 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 154 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 116 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LP1 non-polymer . ;4-[2-(2-ACETYLAMINO-3-NAPHTALEN-1-YL-PROPIONYLAMINO)-4-METHYL-PENTANOYLAMINO]-3-HYDROXY-6-METHYL-HEPTANOIC ACID [1-(1-CARBAMOYL-2-NAPHTHALEN-1-YL-ETHYLCARBAMOYL)-PROPYL]-AMIDE ; ? 'C45 H58 N6 O7' 794.978 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4FIV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_percent_sol 43.0 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.2 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 7.2' # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 1994-09-02 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 4FIV _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.0 _reflns.d_resolution_high 1.8 _reflns.number_obs 9993 _reflns.number_all ? _reflns.percent_possible_obs 92.3 _reflns.pdbx_Rmerge_I_obs 0.0920000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.5 _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.8 _reflns_shell.d_res_low 1.83 _reflns_shell.percent_possible_all 85.4 _reflns_shell.Rmerge_I_obs 0.2730000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.4 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4FIV _refine.ls_number_reflns_obs 9085 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.0 _refine.ls_d_res_high 1.8 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1490000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1FIV' _refine.pdbx_method_to_determine_struct 'RIGID BODY REFINEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 891 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 58 _refine_hist.number_atoms_solvent 92 _refine_hist.number_atoms_total 1041 _refine_hist.d_res_high 1.8 _refine_hist.d_res_low 10.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.014 0.017 ? ? 'X-RAY DIFFRACTION' ? p_angle_d 0.046 0.041 ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d 0.048 0.057 ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it 1.967 2.400 ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it 2.633 3.300 ? ? 'X-RAY DIFFRACTION' ? p_scbond_it 3.932 3.700 ? ? 'X-RAY DIFFRACTION' ? p_scangle_it 5.316 6.400 ? ? 'X-RAY DIFFRACTION' ? p_plane_restr 0.017 0.022 ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr 0.175 0.180 ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd 0.221 0.500 ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd 0.234 0.500 ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd 0.253 0.500 ? ? 'X-RAY DIFFRACTION' ? p_planar_tor 3.4 3.4 ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor 16.4 13.0 ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor 39.7 20.0 ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 4FIV _struct.title 'FIV PROTEASE COMPLEXED WITH AN INHIBITOR LP-130' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4FIV _struct_keywords.pdbx_keywords 'ASPARTIC PROTEASE' _struct_keywords.text 'ASPARTIC PROTEASE, FIV, RETROPEPSIN, RETROVIRUS, CAT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details 'THE AUTHORS NOTE THAT THIS MOLECULE IS ACTIVE AS DIMER' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 37 ? ASP A 39 ? ARG A 40 ASP A 42 5 ? 3 HELX_P HELX_P2 2 ARG A 101 ? LYS A 106 ? ARG A 104 LYS A 109 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 20 ? LEU A 25 ? TYR A 23 LEU A 28 A 2 GLU A 12 ? VAL A 17 ? GLU A 15 VAL A 20 A 3 VAL A 68 ? ILE A 72 ? VAL A 71 ILE A 75 A 4 CYS A 81 ? GLY A 84 ? CYS A 84 GLY A 87 B 1 ILE A 34 ? ASN A 36 ? ILE A 37 ASN A 39 B 2 VAL A 86 ? LEU A 89 ? VAL A 89 LEU A 92 B 3 GLY A 59 ? TYR A 65 ? GLY A 62 TYR A 68 B 4 ARG A 50 ? ILE A 54 ? ARG A 53 ILE A 57 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 20 ? O TYR A 23 N VAL A 17 ? N VAL A 20 A 2 3 O PHE A 16 ? O PHE A 19 N GLU A 71 ? N GLU A 74 A 3 4 O VAL A 68 ? O VAL A 71 N GLY A 84 ? N GLY A 87 B 1 2 O LEU A 35 ? O LEU A 38 N CYS A 87 ? N CYS A 90 B 2 3 O VAL A 86 ? O VAL A 89 N TYR A 65 ? N TYR A 68 B 3 4 O LYS A 60 ? O LYS A 63 N MET A 53 ? N MET A 56 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id LP1 _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 29 _struct_site.details 'BINDING SITE FOR RESIDUE LP1 A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 29 ARG A 10 ? ARG A 13 . ? 5_555 ? 2 AC1 29 ARG A 10 ? ARG A 13 . ? 1_555 ? 3 AC1 29 PHE A 16 ? PHE A 19 . ? 2_655 ? 4 AC1 29 GLY A 19 ? GLY A 22 . ? 2_655 ? 5 AC1 29 PRO A 21 ? PRO A 24 . ? 6_655 ? 6 AC1 29 PRO A 21 ? PRO A 24 . ? 2_655 ? 7 AC1 29 LEU A 25 ? LEU A 28 . ? 5_555 ? 8 AC1 29 ASP A 27 ? ASP A 30 . ? 5_555 ? 9 AC1 29 ASP A 27 ? ASP A 30 . ? 1_555 ? 10 AC1 29 GLY A 29 ? GLY A 32 . ? 1_555 ? 11 AC1 29 GLY A 29 ? GLY A 32 . ? 5_555 ? 12 AC1 29 ALA A 30 ? ALA A 33 . ? 5_555 ? 13 AC1 29 ALA A 30 ? ALA A 33 . ? 1_555 ? 14 AC1 29 ASP A 31 ? ASP A 34 . ? 5_555 ? 15 AC1 29 ASP A 31 ? ASP A 34 . ? 1_555 ? 16 AC1 29 MET A 53 ? MET A 56 . ? 5_555 ? 17 AC1 29 MET A 53 ? MET A 56 . ? 1_555 ? 18 AC1 29 ILE A 54 ? ILE A 57 . ? 1_555 ? 19 AC1 29 ILE A 54 ? ILE A 57 . ? 5_555 ? 20 AC1 29 GLY A 55 ? GLY A 58 . ? 5_555 ? 21 AC1 29 GLY A 55 ? GLY A 58 . ? 1_555 ? 22 AC1 29 VAL A 56 ? VAL A 59 . ? 5_555 ? 23 AC1 29 ILE A 95 ? ILE A 98 . ? 5_555 ? 24 AC1 29 GLN A 96 ? GLN A 99 . ? 1_555 ? 25 AC1 29 GLN A 96 ? GLN A 99 . ? 5_555 ? 26 AC1 29 LEU A 98 ? LEU A 101 . ? 5_555 ? 27 AC1 29 HOH C . ? HOH A 301 . ? 5_555 ? 28 AC1 29 HOH C . ? HOH A 301 . ? 1_555 ? 29 AC1 29 HOH C . ? HOH A 385 . ? 1_555 ? # _database_PDB_matrix.entry_id 4FIV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4FIV _atom_sites.fract_transf_matrix[1][1] 0.019743 _atom_sites.fract_transf_matrix[1][2] 0.011399 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022798 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013423 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 4 4 VAL VAL A . n A 1 2 GLY 2 5 5 GLY GLY A . n A 1 3 THR 3 6 6 THR THR A . n A 1 4 THR 4 7 7 THR THR A . n A 1 5 THR 5 8 8 THR THR A . n A 1 6 THR 6 9 9 THR THR A . n A 1 7 LEU 7 10 10 LEU LEU A . n A 1 8 GLU 8 11 11 GLU GLU A . n A 1 9 LYS 9 12 12 LYS LYS A . n A 1 10 ARG 10 13 13 ARG ARG A . n A 1 11 PRO 11 14 14 PRO PRO A . n A 1 12 GLU 12 15 15 GLU GLU A . n A 1 13 ILE 13 16 16 ILE ILE A . n A 1 14 LEU 14 17 17 LEU LEU A . n A 1 15 ILE 15 18 18 ILE ILE A . n A 1 16 PHE 16 19 19 PHE PHE A . n A 1 17 VAL 17 20 20 VAL VAL A . n A 1 18 ASN 18 21 21 ASN ASN A . n A 1 19 GLY 19 22 22 GLY GLY A . n A 1 20 TYR 20 23 23 TYR TYR A . n A 1 21 PRO 21 24 24 PRO PRO A . n A 1 22 ILE 22 25 25 ILE ILE A . n A 1 23 LYS 23 26 26 LYS LYS A . n A 1 24 PHE 24 27 27 PHE PHE A . n A 1 25 LEU 25 28 28 LEU LEU A . n A 1 26 LEU 26 29 29 LEU LEU A . n A 1 27 ASP 27 30 30 ASP ASP A . n A 1 28 THR 28 31 31 THR THR A . n A 1 29 GLY 29 32 32 GLY GLY A . n A 1 30 ALA 30 33 33 ALA ALA A . n A 1 31 ASP 31 34 34 ASP ASP A . n A 1 32 ILE 32 35 35 ILE ILE A . n A 1 33 THR 33 36 36 THR THR A . n A 1 34 ILE 34 37 37 ILE ILE A . n A 1 35 LEU 35 38 38 LEU LEU A . n A 1 36 ASN 36 39 39 ASN ASN A . n A 1 37 ARG 37 40 40 ARG ARG A . n A 1 38 ARG 38 41 41 ARG ARG A . n A 1 39 ASP 39 42 42 ASP ASP A . n A 1 40 PHE 40 43 43 PHE PHE A . n A 1 41 GLN 41 44 44 GLN GLN A . n A 1 42 VAL 42 45 45 VAL VAL A . n A 1 43 LYS 43 46 46 LYS LYS A . n A 1 44 ASN 44 47 47 ASN ASN A . n A 1 45 SER 45 48 48 SER SER A . n A 1 46 ILE 46 49 49 ILE ILE A . n A 1 47 GLU 47 50 50 GLU GLU A . n A 1 48 ASN 48 51 51 ASN ASN A . n A 1 49 GLY 49 52 52 GLY GLY A . n A 1 50 ARG 50 53 53 ARG ARG A . n A 1 51 GLN 51 54 54 GLN GLN A . n A 1 52 ASN 52 55 55 ASN ASN A . n A 1 53 MET 53 56 56 MET MET A . n A 1 54 ILE 54 57 57 ILE ILE A . n A 1 55 GLY 55 58 58 GLY GLY A . n A 1 56 VAL 56 59 59 VAL VAL A . n A 1 57 GLY 57 60 60 GLY GLY A . n A 1 58 GLY 58 61 61 GLY GLY A . n A 1 59 GLY 59 62 62 GLY GLY A . n A 1 60 LYS 60 63 63 LYS LYS A . n A 1 61 ARG 61 64 64 ARG ARG A . n A 1 62 GLY 62 65 65 GLY GLY A . n A 1 63 THR 63 66 66 THR THR A . n A 1 64 ASN 64 67 67 ASN ASN A . n A 1 65 TYR 65 68 68 TYR TYR A . n A 1 66 ILE 66 69 69 ILE ILE A . n A 1 67 ASN 67 70 70 ASN ASN A . n A 1 68 VAL 68 71 71 VAL VAL A . n A 1 69 HIS 69 72 72 HIS HIS A . n A 1 70 LEU 70 73 73 LEU LEU A . n A 1 71 GLU 71 74 74 GLU GLU A . n A 1 72 ILE 72 75 75 ILE ILE A . n A 1 73 ARG 73 76 76 ARG ARG A . n A 1 74 ASP 74 77 77 ASP ASP A . n A 1 75 GLU 75 78 78 GLU GLU A . n A 1 76 ASN 76 79 79 ASN ASN A . n A 1 77 TYR 77 80 80 TYR TYR A . n A 1 78 LYS 78 81 81 LYS LYS A . n A 1 79 THR 79 82 82 THR THR A . n A 1 80 GLN 80 83 83 GLN GLN A . n A 1 81 CYS 81 84 84 CYS CYS A . n A 1 82 ILE 82 85 85 ILE ILE A . n A 1 83 PHE 83 86 86 PHE PHE A . n A 1 84 GLY 84 87 87 GLY GLY A . n A 1 85 ASN 85 88 88 ASN ASN A . n A 1 86 VAL 86 89 89 VAL VAL A . n A 1 87 CYS 87 90 90 CYS CYS A . n A 1 88 VAL 88 91 91 VAL VAL A . n A 1 89 LEU 89 92 92 LEU LEU A . n A 1 90 GLU 90 93 93 GLU GLU A . n A 1 91 ASP 91 94 94 ASP ASP A . n A 1 92 ASN 92 95 95 ASN ASN A . n A 1 93 SER 93 96 96 SER SER A . n A 1 94 LEU 94 97 97 LEU LEU A . n A 1 95 ILE 95 98 98 ILE ILE A . n A 1 96 GLN 96 99 99 GLN GLN A . n A 1 97 PRO 97 100 100 PRO PRO A . n A 1 98 LEU 98 101 101 LEU LEU A . n A 1 99 LEU 99 102 102 LEU LEU A . n A 1 100 GLY 100 103 103 GLY GLY A . n A 1 101 ARG 101 104 104 ARG ARG A . n A 1 102 ASP 102 105 105 ASP ASP A . n A 1 103 ASN 103 106 106 ASN ASN A . n A 1 104 MET 104 107 107 MET MET A . n A 1 105 ILE 105 108 108 ILE ILE A . n A 1 106 LYS 106 109 109 LYS LYS A . n A 1 107 PHE 107 110 110 PHE PHE A . n A 1 108 ASN 108 111 111 ASN ASN A . n A 1 109 ILE 109 112 112 ILE ILE A . n A 1 110 ARG 110 113 113 ARG ARG A . n A 1 111 LEU 111 114 114 LEU LEU A . n A 1 112 VAL 112 115 115 VAL VAL A . n A 1 113 MET 113 116 116 MET MET A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LP1 1 201 201 LP1 1NI A . C 3 HOH 1 301 301 HOH HOH A . C 3 HOH 2 302 302 HOH HOH A . C 3 HOH 3 303 303 HOH HOH A . C 3 HOH 4 304 304 HOH HOH A . C 3 HOH 5 305 305 HOH HOH A . C 3 HOH 6 306 306 HOH HOH A . C 3 HOH 7 307 307 HOH HOH A . C 3 HOH 8 308 308 HOH HOH A . C 3 HOH 9 309 309 HOH HOH A . C 3 HOH 10 310 310 HOH HOH A . C 3 HOH 11 311 311 HOH HOH A . C 3 HOH 12 312 312 HOH HOH A . C 3 HOH 13 313 313 HOH HOH A . C 3 HOH 14 314 314 HOH HOH A . C 3 HOH 15 315 315 HOH HOH A . C 3 HOH 16 316 316 HOH HOH A . C 3 HOH 17 317 317 HOH HOH A . C 3 HOH 18 318 318 HOH HOH A . C 3 HOH 19 319 319 HOH HOH A . C 3 HOH 20 320 320 HOH HOH A . C 3 HOH 21 321 321 HOH HOH A . C 3 HOH 22 322 322 HOH HOH A . C 3 HOH 23 323 323 HOH HOH A . C 3 HOH 24 324 324 HOH HOH A . C 3 HOH 25 325 325 HOH HOH A . C 3 HOH 26 326 326 HOH HOH A . C 3 HOH 27 327 327 HOH HOH A . C 3 HOH 28 328 328 HOH HOH A . C 3 HOH 29 329 329 HOH HOH A . C 3 HOH 30 330 330 HOH HOH A . C 3 HOH 31 331 331 HOH HOH A . C 3 HOH 32 332 332 HOH HOH A . C 3 HOH 33 333 333 HOH HOH A . C 3 HOH 34 334 334 HOH HOH A . C 3 HOH 35 335 335 HOH HOH A . C 3 HOH 36 336 336 HOH HOH A . C 3 HOH 37 337 337 HOH HOH A . C 3 HOH 38 338 338 HOH HOH A . C 3 HOH 39 339 339 HOH HOH A . C 3 HOH 40 340 340 HOH HOH A . C 3 HOH 41 341 341 HOH HOH A . C 3 HOH 42 342 342 HOH HOH A . C 3 HOH 43 343 343 HOH HOH A . C 3 HOH 44 344 344 HOH HOH A . C 3 HOH 45 345 345 HOH HOH A . C 3 HOH 46 346 346 HOH HOH A . C 3 HOH 47 347 347 HOH HOH A . C 3 HOH 48 348 348 HOH HOH A . C 3 HOH 49 349 349 HOH HOH A . C 3 HOH 50 350 350 HOH HOH A . C 3 HOH 51 351 351 HOH HOH A . C 3 HOH 52 352 352 HOH HOH A . C 3 HOH 53 353 353 HOH HOH A . C 3 HOH 54 354 354 HOH HOH A . C 3 HOH 55 355 355 HOH HOH A . C 3 HOH 56 356 356 HOH HOH A . C 3 HOH 57 357 357 HOH HOH A . C 3 HOH 58 358 358 HOH HOH A . C 3 HOH 59 359 359 HOH HOH A . C 3 HOH 60 360 360 HOH HOH A . C 3 HOH 61 361 361 HOH HOH A . C 3 HOH 62 362 362 HOH HOH A . C 3 HOH 63 363 363 HOH HOH A . C 3 HOH 64 364 364 HOH HOH A . C 3 HOH 65 365 365 HOH HOH A . C 3 HOH 66 366 366 HOH HOH A . C 3 HOH 67 367 367 HOH HOH A . C 3 HOH 68 368 368 HOH HOH A . C 3 HOH 69 369 369 HOH HOH A . C 3 HOH 70 370 370 HOH HOH A . C 3 HOH 71 371 371 HOH HOH A . C 3 HOH 72 372 372 HOH HOH A . C 3 HOH 73 373 373 HOH HOH A . C 3 HOH 74 374 374 HOH HOH A . C 3 HOH 75 375 375 HOH HOH A . C 3 HOH 76 376 376 HOH HOH A . C 3 HOH 77 377 377 HOH HOH A . C 3 HOH 78 378 378 HOH HOH A . C 3 HOH 79 379 379 HOH HOH A . C 3 HOH 80 380 380 HOH HOH A . C 3 HOH 81 381 381 HOH HOH A . C 3 HOH 82 382 382 HOH HOH A . C 3 HOH 83 383 383 HOH HOH A . C 3 HOH 84 384 384 HOH HOH A . C 3 HOH 85 385 385 HOH HOH A . C 3 HOH 86 386 386 HOH HOH A . C 3 HOH 87 387 387 HOH HOH A . C 3 HOH 88 388 388 HOH HOH A . C 3 HOH 89 389 389 HOH HOH A . C 3 HOH 90 390 390 HOH HOH A . C 3 HOH 91 391 391 HOH HOH A . C 3 HOH 92 392 392 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6710 ? 1 MORE -53 ? 1 'SSA (A^2)' 9470 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 49.6666666667 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A LP1 201 ? B LP1 . 2 1 A HOH 301 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-01-13 2 'Structure model' 1 1 2008-03-25 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_initial_refinement_model 4 4 'Structure model' pdbx_struct_special_symmetry 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 PROFFT refinement . ? 2 X-PLOR refinement . ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 X-PLOR phasing . ? 6 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ; HELIX DETERMINATION METHOD: TAKEN FROM RELEASED PDB ENTRY 1FIV ; 700 ; SHEET DETERMINATION METHOD: TAKEN FROM RELEASED PDB ENTRY 1FIV ; # _pdbx_entry_details.entry_id 4FIV _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;THE INHIBITOR LP-130 (1NI 201) IS TWO-FOLD DISORDERED, SO THE TWO ORIENTATIONS FALL ON TOP OF EACH OTHER. SOME ATOMS RELATED BY CRYSTALLOGRAPHIC SYMMETRY MAY BE IN CLOSE CONTACT. THE ALTERNATE LOCATION INDICATOR A HAS BEEN ASSIGNED TO THE DISORDERED INHIBITOR SO THAT THESE ATOMS WOULD NOT BE LISTED AS CLOSE CONTACTS. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 VAL _pdbx_validate_close_contact.auth_seq_id_1 4 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 N _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 THR _pdbx_validate_close_contact.auth_seq_id_2 6 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.12 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 13 ? ? CZ A ARG 13 ? ? NH1 A ARG 13 ? ? 117.20 120.30 -3.10 0.50 N 2 1 CB A ASP 34 ? ? CG A ASP 34 ? ? OD2 A ASP 34 ? ? 110.41 118.30 -7.89 0.90 N 3 1 NE A ARG 40 ? ? CZ A ARG 40 ? ? NH2 A ARG 40 ? ? 123.70 120.30 3.40 0.50 N 4 1 CA A GLU 50 ? ? CB A GLU 50 ? ? CG A GLU 50 ? ? 130.40 113.40 17.00 2.20 N 5 1 CA A GLY 61 ? B C A GLY 61 ? B N A GLY 62 ? ? 128.31 116.20 12.11 2.00 Y 6 1 O A GLY 61 ? B C A GLY 61 ? B N A GLY 62 ? ? 110.16 123.20 -13.04 1.70 Y 7 1 C A GLY 61 ? B N A GLY 62 ? ? CA A GLY 62 ? ? 137.25 122.30 14.95 2.10 Y 8 1 CD A ARG 76 ? ? NE A ARG 76 ? ? CZ A ARG 76 ? ? 132.39 123.60 8.79 1.40 N 9 1 NE A ARG 76 ? ? CZ A ARG 76 ? ? NH1 A ARG 76 ? ? 123.40 120.30 3.10 0.50 N 10 1 NE A ARG 76 ? ? CZ A ARG 76 ? ? NH2 A ARG 76 ? ? 113.88 120.30 -6.42 0.50 N 11 1 CA A CYS 84 ? ? CB A CYS 84 ? ? SG A CYS 84 ? ? 123.25 114.20 9.05 1.10 N 12 1 NH1 A ARG 104 ? ? CZ A ARG 104 ? ? NH2 A ARG 104 ? ? 111.79 119.40 -7.61 1.10 N 13 1 NE A ARG 104 ? ? CZ A ARG 104 ? ? NH2 A ARG 104 ? ? 129.68 120.30 9.38 0.50 N 14 1 CD A ARG 113 ? ? NE A ARG 113 ? ? CZ A ARG 113 ? ? 174.12 123.60 50.52 1.40 N 15 1 NE A ARG 113 ? ? CZ A ARG 113 ? ? NH1 A ARG 113 ? ? 123.44 120.30 3.14 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 46 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 51.95 _pdbx_validate_torsion.psi -129.54 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 64 ? CG ? A ARG 61 CG 2 1 Y 1 A ARG 64 ? CD ? A ARG 61 CD 3 1 Y 1 A ARG 64 ? NE ? A ARG 61 NE 4 1 Y 1 A ARG 64 ? CZ ? A ARG 61 CZ 5 1 Y 1 A ARG 64 ? NH1 ? A ARG 61 NH1 6 1 Y 1 A ARG 64 ? NH2 ? A ARG 61 NH2 7 1 Y 1 A GLU 78 ? CD ? A GLU 75 CD 8 1 Y 1 A GLU 78 ? OE1 ? A GLU 75 OE1 9 1 Y 1 A GLU 78 ? OE2 ? A GLU 75 OE2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;4-[2-(2-ACETYLAMINO-3-NAPHTALEN-1-YL-PROPIONYLAMINO)-4-METHYL-PENTANOYLAMINO]-3-HYDROXY-6-METHYL-HEPTANOIC ACID [1-(1-CARBAMOYL-2-NAPHTHALEN-1-YL-ETHYLCARBAMOYL)-PROPYL]-AMIDE ; LP1 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1FIV _pdbx_initial_refinement_model.details 'PDB ENTRY 1FIV' #