HEADER HYDROLASE 18-JUN-12 4FMP TITLE CRYSTAL STRUCTURE OF THERMOSTABLE, ORGANIC-SOLVENT TOLERANT LIPASE TITLE 2 FROM GEOBACILLUS SP. STRAIN ARM COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 35-415; COMPND 5 EC: 3.1.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 STRAIN: ARM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTRCHIS2 KEYWDS ALPHA/BETA HYDROLASE FOLD, ALPHA/BETA FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.D.NISBAR,R.N.Z.R.A.RAHMAN,M.S.M.ALI,A.T.C.LEOW REVDAT 4 13-MAR-24 4FMP 1 SOURCE REVDAT 3 13-SEP-23 4FMP 1 REMARK LINK REVDAT 2 07-AUG-13 4FMP 1 REVDAT 1 31-JUL-13 4FMP 0 JRNL AUTH N.D.NISBAR,R.N.Z.R.A.RAHMAN,M.S.M.ALI,A.T.C.LEOW JRNL TITL CRYSTALLIZATION OF NOVEL ARM LIPASE AND ELUCIDATION OF ITS JRNL TITL 2 SPACE-GROWN CRYSTAL STRUCTURE JRNL REF THESIS 2013 JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 40490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2152 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2894 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6016 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 361 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.87000 REMARK 3 B22 (A**2) : -1.46000 REMARK 3 B33 (A**2) : -1.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.265 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.225 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.787 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6184 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8410 ; 1.854 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 760 ; 6.534 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 309 ;34.579 ;23.107 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 933 ;15.814 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;16.764 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 880 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4882 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3766 ; 1.007 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6024 ; 1.849 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2418 ; 3.021 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2386 ; 4.713 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4FMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000073091. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42814 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2DSN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES MONOHYDRATE, 12% V/V PEG REMARK 280 20000, PH 6.5, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 71.69600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 137 O HOH B 618 1.74 REMARK 500 CG2 ILE B 362 O HOH B 675 1.86 REMARK 500 N VAL B 142 O HOH B 618 1.89 REMARK 500 NH2 ARG A 271 O HOH A 522 1.90 REMARK 500 O HOH B 598 O HOH B 622 1.92 REMARK 500 N ASP B 175 O HOH B 523 1.97 REMARK 500 OE1 GLU B 100 O HOH B 673 1.97 REMARK 500 O HOH A 569 O HOH A 604 2.02 REMARK 500 CB GLN B 114 O HOH B 676 2.03 REMARK 500 O HOH A 530 O HOH B 562 2.04 REMARK 500 O HOH B 580 O HOH B 608 2.09 REMARK 500 CD1 LEU A 379 O HOH A 658 2.10 REMARK 500 CZ ARG A 271 O HOH A 522 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 505 O HOH B 528 1455 1.78 REMARK 500 O HOH A 573 O HOH B 530 2555 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 187 CB VAL A 187 CG1 -0.136 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 271 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 LEU A 285 CB - CG - CD2 ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG A 330 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 VAL A 361 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 ARG B 271 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 113 -136.65 54.83 REMARK 500 VAL A 203 -67.17 63.14 REMARK 500 ARG A 271 35.49 -153.34 REMARK 500 ASN A 304 99.32 -161.47 REMARK 500 ASP A 310 -161.86 -121.83 REMARK 500 ILE A 319 -37.64 -145.65 REMARK 500 LYS A 329 -51.31 -127.01 REMARK 500 ASP A 371 79.57 -100.15 REMARK 500 SER B 113 -133.60 56.81 REMARK 500 ASN B 141 72.59 44.09 REMARK 500 VAL B 203 -72.94 68.32 REMARK 500 LYS B 207 42.66 79.12 REMARK 500 LEU B 208 36.24 -99.34 REMARK 500 ARG B 271 49.59 -145.42 REMARK 500 ASN B 304 95.12 -166.85 REMARK 500 ASP B 310 -163.43 -109.77 REMARK 500 ILE B 319 -36.95 -135.33 REMARK 500 LYS B 329 -49.77 -140.64 REMARK 500 ASN B 367 93.56 -163.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE B 16 THR B 17 149.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 61 OD1 REMARK 620 2 HIS A 81 NE2 99.0 REMARK 620 3 HIS A 87 NE2 119.1 99.8 REMARK 620 4 ASP A 238 OD2 129.4 108.9 97.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 286 O REMARK 620 2 GLU A 360 OE2 88.4 REMARK 620 3 ASP A 365 OD2 94.7 113.5 REMARK 620 4 PRO A 366 O 165.4 102.4 90.0 REMARK 620 5 HOH A 611 O 81.3 125.1 120.9 84.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 61 OD1 REMARK 620 2 HIS B 81 NE2 93.4 REMARK 620 3 HIS B 87 NE2 121.3 109.8 REMARK 620 4 ASP B 238 OD2 124.7 111.9 95.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 286 O REMARK 620 2 GLU B 360 OE2 84.3 REMARK 620 3 ASP B 365 OD2 104.8 116.4 REMARK 620 4 PRO B 366 O 171.5 89.8 83.3 REMARK 620 5 HOH B 580 O 85.0 86.2 155.7 88.5 REMARK 620 6 HOH B 608 O 97.0 125.6 115.6 81.4 40.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 401 DBREF 4FMP A 5 385 UNP Q93A71 Q93A71_GEOSE 35 415 DBREF 4FMP B 5 385 UNP Q93A71 Q93A71_GEOSE 35 415 SEQRES 1 A 381 ALA ASN ASP ALA PRO ILE VAL LEU LEU HIS GLY PHE THR SEQRES 2 A 381 GLY TRP GLY ARG GLU GLU MET PHE GLY PHE LYS TYR TRP SEQRES 3 A 381 GLY GLY VAL ARG GLY ASP ILE GLU GLN TRP LEU ASN ASP SEQRES 4 A 381 ASN GLY TYR ARG THR TYR THR LEU ALA VAL GLY PRO LEU SEQRES 5 A 381 SER SER ASN TRP ASP ARG ALA CYS GLU ALA TYR ALA GLN SEQRES 6 A 381 LEU VAL GLY GLY THR VAL ASP TYR GLY ALA ALA HIS ALA SEQRES 7 A 381 ALA LYS HIS GLY HIS ALA ARG PHE GLY ARG THR TYR PRO SEQRES 8 A 381 GLY LEU LEU PRO GLU LEU LYS ARG GLY GLY ARG ILE HIS SEQRES 9 A 381 ILE ILE ALA HIS SER GLN GLY GLY GLN THR ALA ARG MET SEQRES 10 A 381 LEU VAL SER LEU LEU GLU ASN GLY SER GLN GLU GLU ARG SEQRES 11 A 381 GLU TYR ALA LYS ALA HIS ASN VAL SER LEU SER PRO LEU SEQRES 12 A 381 PHE GLU GLY GLY HIS HIS PHE VAL LEU SER VAL THR THR SEQRES 13 A 381 ILE ALA THR PRO HIS ASP GLY THR THR LEU VAL ASN MET SEQRES 14 A 381 VAL ASP PHE THR ASP ARG PHE PHE ASP LEU GLN LYS ALA SEQRES 15 A 381 VAL LEU LYS ALA ALA ALA VAL ALA SER ASN VAL PRO TYR SEQRES 16 A 381 THR SER GLN VAL TYR ASP PHE LYS LEU ASP GLN TRP GLY SEQRES 17 A 381 LEU ARG ARG GLN PRO GLY GLU SER PHE ASP GLN TYR PHE SEQRES 18 A 381 GLU ARG LEU LYS ARG SER PRO VAL TRP THR SER THR ASP SEQRES 19 A 381 THR ALA ARG TYR ASP LEU SER VAL PRO GLY ALA GLU LYS SEQRES 20 A 381 LEU ASN GLN TRP VAL LYS ALA SER PRO ASN THR TYR TYR SEQRES 21 A 381 LEU SER PHE ALA THR GLU ARG THR TYR ARG GLY ALA LEU SEQRES 22 A 381 THR GLY ASN TYR TYR PRO GLU LEU GLY MET ASN ALA PHE SEQRES 23 A 381 SER ALA VAL VAL CYS ALA PRO PHE LEU GLY SER TYR ARG SEQRES 24 A 381 ASN ALA THR LEU GLY ILE ASP ASP ARG TRP LEU GLU ASN SEQRES 25 A 381 ASP GLY ILE VAL ASN THR PHE SER MET ASN GLY PRO LYS SEQRES 26 A 381 ARG GLY SER THR ASP ARG ILE VAL PRO TYR ASP GLY THR SEQRES 27 A 381 ILE LYS LYS GLY VAL TRP ASN ASP MET GLY THR TYR ASN SEQRES 28 A 381 VAL ASP HIS LEU GLU VAL ILE GLY VAL ASP PRO ASN PRO SEQRES 29 A 381 LEU PHE ASP ILE ARG ALA PHE TYR LEU ARG LEU ALA GLU SEQRES 30 A 381 GLN LEU ALA SER SEQRES 1 B 381 ALA ASN ASP ALA PRO ILE VAL LEU LEU HIS GLY PHE THR SEQRES 2 B 381 GLY TRP GLY ARG GLU GLU MET PHE GLY PHE LYS TYR TRP SEQRES 3 B 381 GLY GLY VAL ARG GLY ASP ILE GLU GLN TRP LEU ASN ASP SEQRES 4 B 381 ASN GLY TYR ARG THR TYR THR LEU ALA VAL GLY PRO LEU SEQRES 5 B 381 SER SER ASN TRP ASP ARG ALA CYS GLU ALA TYR ALA GLN SEQRES 6 B 381 LEU VAL GLY GLY THR VAL ASP TYR GLY ALA ALA HIS ALA SEQRES 7 B 381 ALA LYS HIS GLY HIS ALA ARG PHE GLY ARG THR TYR PRO SEQRES 8 B 381 GLY LEU LEU PRO GLU LEU LYS ARG GLY GLY ARG ILE HIS SEQRES 9 B 381 ILE ILE ALA HIS SER GLN GLY GLY GLN THR ALA ARG MET SEQRES 10 B 381 LEU VAL SER LEU LEU GLU ASN GLY SER GLN GLU GLU ARG SEQRES 11 B 381 GLU TYR ALA LYS ALA HIS ASN VAL SER LEU SER PRO LEU SEQRES 12 B 381 PHE GLU GLY GLY HIS HIS PHE VAL LEU SER VAL THR THR SEQRES 13 B 381 ILE ALA THR PRO HIS ASP GLY THR THR LEU VAL ASN MET SEQRES 14 B 381 VAL ASP PHE THR ASP ARG PHE PHE ASP LEU GLN LYS ALA SEQRES 15 B 381 VAL LEU LYS ALA ALA ALA VAL ALA SER ASN VAL PRO TYR SEQRES 16 B 381 THR SER GLN VAL TYR ASP PHE LYS LEU ASP GLN TRP GLY SEQRES 17 B 381 LEU ARG ARG GLN PRO GLY GLU SER PHE ASP GLN TYR PHE SEQRES 18 B 381 GLU ARG LEU LYS ARG SER PRO VAL TRP THR SER THR ASP SEQRES 19 B 381 THR ALA ARG TYR ASP LEU SER VAL PRO GLY ALA GLU LYS SEQRES 20 B 381 LEU ASN GLN TRP VAL LYS ALA SER PRO ASN THR TYR TYR SEQRES 21 B 381 LEU SER PHE ALA THR GLU ARG THR TYR ARG GLY ALA LEU SEQRES 22 B 381 THR GLY ASN TYR TYR PRO GLU LEU GLY MET ASN ALA PHE SEQRES 23 B 381 SER ALA VAL VAL CYS ALA PRO PHE LEU GLY SER TYR ARG SEQRES 24 B 381 ASN ALA THR LEU GLY ILE ASP ASP ARG TRP LEU GLU ASN SEQRES 25 B 381 ASP GLY ILE VAL ASN THR PHE SER MET ASN GLY PRO LYS SEQRES 26 B 381 ARG GLY SER THR ASP ARG ILE VAL PRO TYR ASP GLY THR SEQRES 27 B 381 ILE LYS LYS GLY VAL TRP ASN ASP MET GLY THR TYR ASN SEQRES 28 B 381 VAL ASP HIS LEU GLU VAL ILE GLY VAL ASP PRO ASN PRO SEQRES 29 B 381 LEU PHE ASP ILE ARG ALA PHE TYR LEU ARG LEU ALA GLU SEQRES 30 B 381 GLN LEU ALA SER HET ZN A 400 1 HET CA A 401 1 HET ZN B 400 1 HET CA B 401 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CA 2(CA 2+) FORMUL 7 HOH *361(H2 O) HELIX 1 1 GLU A 22 PHE A 27 5 6 HELIX 2 2 GLY A 31 GLY A 35 5 5 HELIX 3 3 ASP A 36 ASN A 44 1 9 HELIX 4 4 SER A 58 GLY A 72 1 15 HELIX 5 5 GLY A 78 GLY A 86 1 9 HELIX 6 6 LEU A 98 GLY A 104 5 7 HELIX 7 7 GLN A 114 GLY A 129 1 16 HELIX 8 8 SER A 130 ASN A 141 1 12 HELIX 9 9 SER A 145 GLU A 149 5 5 HELIX 10 10 THR A 168 MET A 173 5 6 HELIX 11 11 ASP A 175 ALA A 191 1 17 HELIX 12 12 LEU A 208 GLY A 212 5 5 HELIX 13 13 SER A 220 ARG A 230 1 11 HELIX 14 14 SER A 231 SER A 236 1 6 HELIX 15 15 THR A 239 SER A 245 1 7 HELIX 16 16 SER A 245 VAL A 256 1 12 HELIX 17 17 ASN A 288 CYS A 295 1 8 HELIX 18 18 CYS A 295 TYR A 302 1 8 HELIX 19 19 ASN A 304 GLY A 308 5 5 HELIX 20 20 ASP A 310 LEU A 314 5 5 HELIX 21 21 ASN A 321 MET A 325 5 5 HELIX 22 22 ASP A 371 SER A 385 1 15 HELIX 23 23 GLU B 23 PHE B 27 5 5 HELIX 24 24 GLY B 31 GLY B 35 5 5 HELIX 25 25 ASP B 36 ASN B 44 1 9 HELIX 26 26 SER B 58 GLY B 72 1 15 HELIX 27 27 GLY B 78 GLY B 86 1 9 HELIX 28 28 LEU B 98 GLY B 104 5 7 HELIX 29 29 GLN B 114 GLY B 129 1 16 HELIX 30 30 SER B 130 ASN B 141 1 12 HELIX 31 31 SER B 145 GLU B 149 5 5 HELIX 32 32 THR B 168 MET B 173 5 6 HELIX 33 33 ASP B 175 ALA B 191 1 17 HELIX 34 34 LEU B 208 GLY B 212 5 5 HELIX 35 35 SER B 220 ARG B 230 1 11 HELIX 36 36 SER B 231 SER B 236 1 6 HELIX 37 37 THR B 239 SER B 245 1 7 HELIX 38 38 SER B 245 VAL B 256 1 12 HELIX 39 39 ASN B 288 CYS B 295 1 8 HELIX 40 40 CYS B 295 GLY B 300 1 6 HELIX 41 41 ASP B 310 LEU B 314 5 5 HELIX 42 42 ASN B 321 MET B 325 5 5 HELIX 43 43 ASP B 371 SER B 385 1 15 SHEET 1 A 7 THR A 48 LEU A 51 0 SHEET 2 A 7 ILE A 10 LEU A 13 1 N LEU A 12 O LEU A 51 SHEET 3 A 7 ILE A 107 HIS A 112 1 O HIS A 108 N VAL A 11 SHEET 4 A 7 VAL A 155 ILE A 161 1 O LEU A 156 N ILE A 107 SHEET 5 A 7 TYR A 263 THR A 269 1 O TYR A 263 N VAL A 158 SHEET 6 A 7 TRP A 348 TYR A 354 1 O TYR A 354 N ALA A 268 SHEET 7 A 7 ILE A 336 PRO A 338 1 N VAL A 337 O TRP A 348 SHEET 1 B 2 GLY A 73 ASP A 76 0 SHEET 2 B 2 PHE A 90 TYR A 94 -1 O TYR A 94 N GLY A 73 SHEET 1 C 2 THR A 272 ARG A 274 0 SHEET 2 C 2 TYR A 281 PRO A 283 -1 O TYR A 282 N TYR A 273 SHEET 1 D 7 THR B 48 LEU B 51 0 SHEET 2 D 7 ILE B 10 LEU B 13 1 N LEU B 12 O TYR B 49 SHEET 3 D 7 ILE B 107 HIS B 112 1 O ILE B 110 N LEU B 13 SHEET 4 D 7 VAL B 155 ILE B 161 1 O SER B 157 N ILE B 109 SHEET 5 D 7 TYR B 263 THR B 269 1 O PHE B 267 N THR B 160 SHEET 6 D 7 TRP B 348 TYR B 354 1 O ASN B 349 N TYR B 264 SHEET 7 D 7 ILE B 336 PRO B 338 1 N VAL B 337 O TRP B 348 SHEET 1 E 2 GLY B 73 ASP B 76 0 SHEET 2 E 2 PHE B 90 TYR B 94 -1 O TYR B 94 N GLY B 73 SHEET 1 F 2 THR B 272 ARG B 274 0 SHEET 2 F 2 TYR B 281 PRO B 283 -1 O TYR B 282 N TYR B 273 LINK OD1 ASP A 61 ZN ZN A 400 1555 1555 2.01 LINK NE2 HIS A 81 ZN ZN A 400 1555 1555 2.10 LINK NE2 HIS A 87 ZN ZN A 400 1555 1555 2.07 LINK OD2 ASP A 238 ZN ZN A 400 1555 1555 1.99 LINK O GLY A 286 CA CA A 401 1555 1555 2.42 LINK OE2 GLU A 360 CA CA A 401 1555 1555 2.45 LINK OD2 ASP A 365 CA CA A 401 1555 1555 2.89 LINK O PRO A 366 CA CA A 401 1555 1555 2.49 LINK CA CA A 401 O HOH A 611 1555 1555 2.66 LINK OD1 ASP B 61 ZN ZN B 400 1555 1555 2.11 LINK NE2 HIS B 81 ZN ZN B 400 1555 1555 2.05 LINK NE2 HIS B 87 ZN ZN B 400 1555 1555 1.95 LINK OD2 ASP B 238 ZN ZN B 400 1555 1555 2.02 LINK O GLY B 286 CA CA B 401 1555 1555 2.30 LINK OE2 GLU B 360 CA CA B 401 1555 1555 2.59 LINK OD2 ASP B 365 CA CA B 401 1555 1555 2.86 LINK O PRO B 366 CA CA B 401 1555 1555 2.60 LINK CA CA B 401 O HOH B 580 1555 1555 2.89 LINK CA CA B 401 O HOH B 608 1555 1555 3.13 SITE 1 AC1 4 ASP A 61 HIS A 81 HIS A 87 ASP A 238 SITE 1 AC2 5 GLY A 286 GLU A 360 ASP A 365 PRO A 366 SITE 2 AC2 5 HOH A 611 SITE 1 AC3 4 ASP B 61 HIS B 81 HIS B 87 ASP B 238 SITE 1 AC4 5 GLY B 286 GLU B 360 ASP B 365 PRO B 366 SITE 2 AC4 5 HOH B 580 CRYST1 55.786 143.392 63.965 90.00 105.88 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017926 0.000000 0.005099 0.00000 SCALE2 0.000000 0.006974 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016254 0.00000