data_4FNJ # _entry.id 4FNJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4FNJ pdb_00004fnj 10.2210/pdb4fnj/pdb NDB NA1873 ? ? RCSB RCSB073121 ? ? WWPDB D_1000073121 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-17 2 'Structure model' 1 1 2012-11-07 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.value' 18 3 'Structure model' '_struct_conn.pdbx_dist_value' 19 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 30 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4FNJ _pdbx_database_status.recvd_initial_deposition_date 2012-06-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Coonrod, L.A.' 1 'Lohman, J.R.' 2 'Berglund, J.A.' 3 # _citation.id primary _citation.title 'Utilizing the GAAA Tetraloop/Receptor To Facilitate Crystal Packing and Determination of the Structure of a CUG RNA Helix.' _citation.journal_abbrev Biochemistry _citation.journal_volume 51 _citation.page_first 8330 _citation.page_last 8337 _citation.year 2012 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23025897 _citation.pdbx_database_id_DOI 10.1021/bi300829w # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Coonrod, L.A.' 1 ? primary 'Lohman, J.R.' 2 ? primary 'Berglund, J.A.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (35-MER)' 11253.693 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 3 water nat water 18.015 44 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CUGCUGGCUAAGGCAUGAAAGUGCUAUGCCUGCUG _entity_poly.pdbx_seq_one_letter_code_can CUGCUGGCUAAGGCAUGAAAGUGCUAUGCCUGCUG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 U n 1 3 G n 1 4 C n 1 5 U n 1 6 G n 1 7 G n 1 8 C n 1 9 U n 1 10 A n 1 11 A n 1 12 G n 1 13 G n 1 14 C n 1 15 A n 1 16 U n 1 17 G n 1 18 A n 1 19 A n 1 20 A n 1 21 G n 1 22 U n 1 23 G n 1 24 C n 1 25 U n 1 26 A n 1 27 U n 1 28 G n 1 29 C n 1 30 C n 1 31 U n 1 32 G n 1 33 C n 1 34 U n 1 35 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name artificial _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 U 2 2 2 U U A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 U 5 5 5 U U A . n A 1 6 G 6 6 6 G G A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n A 1 9 U 9 9 9 U U A . n A 1 10 A 10 10 10 A A A . n A 1 11 A 11 11 11 A A A . n A 1 12 G 12 12 12 G G A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 A 15 15 15 A A A . n A 1 16 U 16 16 16 U U A . n A 1 17 G 17 17 17 G G A . n A 1 18 A 18 18 18 A A A . n A 1 19 A 19 19 19 A A A . n A 1 20 A 20 20 20 A A A . n A 1 21 G 21 21 21 G G A . n A 1 22 U 22 22 22 U U A . n A 1 23 G 23 23 23 G G A . n A 1 24 C 24 24 24 C C A . n A 1 25 U 25 25 25 U U A . n A 1 26 A 26 26 26 A A A . n A 1 27 U 27 27 27 U U A . n A 1 28 G 28 28 28 G G A . n A 1 29 C 29 29 29 C C A . n A 1 30 C 30 30 30 C C A . n A 1 31 U 31 31 31 U U A . n A 1 32 G 32 32 32 G G A . n A 1 33 C 33 33 33 C C A . n A 1 34 U 34 34 34 U U A . n A 1 35 G 35 35 35 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 101 1 MG MG A . C 2 MG 1 102 1 MG MG A . D 2 MG 1 103 1 MG MG A . E 2 MG 1 104 1 MG MG A . F 2 MG 1 105 1 MG MG A . G 3 HOH 1 201 2 HOH HOH A . G 3 HOH 2 202 3 HOH HOH A . G 3 HOH 3 203 4 HOH HOH A . G 3 HOH 4 204 7 HOH HOH A . G 3 HOH 5 205 9 HOH HOH A . G 3 HOH 6 206 10 HOH HOH A . G 3 HOH 7 207 11 HOH HOH A . G 3 HOH 8 208 13 HOH HOH A . G 3 HOH 9 209 14 HOH HOH A . G 3 HOH 10 210 16 HOH HOH A . G 3 HOH 11 211 20 HOH HOH A . G 3 HOH 12 212 25 HOH HOH A . G 3 HOH 13 213 33 HOH HOH A . G 3 HOH 14 214 37 HOH HOH A . G 3 HOH 15 215 42 HOH HOH A . G 3 HOH 16 216 45 HOH HOH A . G 3 HOH 17 217 49 HOH HOH A . G 3 HOH 18 218 50 HOH HOH A . G 3 HOH 19 219 55 HOH HOH A . G 3 HOH 20 220 69 HOH HOH A . G 3 HOH 21 221 72 HOH HOH A . G 3 HOH 22 222 73 HOH HOH A . G 3 HOH 23 223 74 HOH HOH A . G 3 HOH 24 224 76 HOH HOH A . G 3 HOH 25 225 77 HOH HOH A . G 3 HOH 26 226 78 HOH HOH A . G 3 HOH 27 227 79 HOH HOH A . G 3 HOH 28 228 80 HOH HOH A . G 3 HOH 29 229 81 HOH HOH A . G 3 HOH 30 230 83 HOH HOH A . G 3 HOH 31 231 84 HOH HOH A . G 3 HOH 32 232 86 HOH HOH A . G 3 HOH 33 233 88 HOH HOH A . G 3 HOH 34 234 91 HOH HOH A . G 3 HOH 35 235 92 HOH HOH A . G 3 HOH 36 236 93 HOH HOH A . G 3 HOH 37 237 94 HOH HOH A . G 3 HOH 38 238 95 HOH HOH A . G 3 HOH 39 239 96 HOH HOH A . G 3 HOH 40 240 97 HOH HOH A . G 3 HOH 41 241 102 HOH HOH A . G 3 HOH 42 242 104 HOH HOH A . G 3 HOH 43 243 108 HOH HOH A . G 3 HOH 44 244 110 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.6.0117 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 4FNJ _cell.length_a 70.336 _cell.length_b 70.336 _cell.length_c 68.236 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4FNJ _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4FNJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.89 _exptl_crystal.density_percent_sol 57.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.004M MgSO4, 0.05M Tris, 30% 1,6-hexanediol, VAPOR DIFFUSION, HANGING DROP, temperature 296K, pH 8.5' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-12-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(220) Asymmetric cut single crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97740 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97740 # _reflns.entry_id 4FNJ _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.95 _reflns.number_obs 9054 _reflns.number_all ? _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.02 _reflns_shell.percent_possible_all 98.9 _reflns_shell.Rmerge_I_obs 0.654 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.159 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4FNJ _refine.ls_number_reflns_obs 8621 _refine.ls_number_reflns_all 9125 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.75 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 99.18 _refine.ls_R_factor_obs 0.21079 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20809 _refine.ls_R_factor_R_free 0.26642 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 433 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.972 _refine.correlation_coeff_Fo_to_Fc_free 0.956 _refine.B_iso_mean 55.045 _refine.aniso_B[1][1] -0.16 _refine.aniso_B[2][2] -0.16 _refine.aniso_B[3][3] 0.24 _refine.aniso_B[1][2] -0.08 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.158 _refine.pdbx_overall_ESU_R_Free 0.161 _refine.overall_SU_ML 0.149 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.449 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 744 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 44 _refine_hist.number_atoms_total 793 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 22.75 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.008 0.011 ? 831 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2.256 1.467 ? 1294 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_chiral_restr 0.129 0.200 ? 140 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.020 0.020 ? 362 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.953 _refine_ls_shell.d_res_low 2.003 _refine_ls_shell.number_reflns_R_work 627 _refine_ls_shell.R_factor_R_work 0.359 _refine_ls_shell.percent_reflns_obs 97.49 _refine_ls_shell.R_factor_R_free 0.370 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 34 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 4FNJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4FNJ _struct.title 'Utilizing the GAAA tetraloop/receptor to facilitate crystal packing and structure determination of a CUG RNA helix' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4FNJ _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'CUG repeat GAAA tetraloop/receptor, Toxic RNA, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4FNJ _struct_ref.pdbx_db_accession 4FNJ _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4FNJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 35 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4FNJ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 35 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 35 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 10 "O2'" ? ? ? 1_555 E MG . MG ? ? A A 10 A MG 104 1_555 ? ? ? ? ? ? ? 2.271 ? ? metalc2 metalc ? ? A G 12 O6 ? ? ? 1_555 E MG . MG ? ? A G 12 A MG 104 1_555 ? ? ? ? ? ? ? 2.740 ? ? metalc3 metalc ? ? A G 28 OP1 ? ? ? 1_555 F MG . MG ? ? A G 28 A MG 105 1_555 ? ? ? ? ? ? ? 2.694 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 A HOH 227 1_555 ? ? ? ? ? ? ? 2.651 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 A HOH 228 1_555 ? ? ? ? ? ? ? 2.173 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 A HOH 230 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc7 metalc ? ? B MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 A HOH 231 1_555 ? ? ? ? ? ? ? 2.170 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 214 1_555 ? ? ? ? ? ? ? 2.273 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 217 1_555 ? ? ? ? ? ? ? 1.936 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 226 1_555 ? ? ? ? ? ? ? 2.525 ? ? metalc11 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 239 1_555 ? ? ? ? ? ? ? 2.418 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 1 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 1 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 1 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 A U 34 O2 ? ? A U 2 A U 34 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 A U 34 N3 ? ? A U 2 A U 34 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 3 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 3 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 3 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 4 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 4 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 4 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 O4 ? ? ? 1_555 A U 31 N3 ? ? A U 5 A U 31 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog13 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 6 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 6 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 6 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 7 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 7 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 7 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 8 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 8 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 8 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 26 N7 ? ? A U 9 A A 26 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog23 hydrog ? ? A U 9 O2 ? ? ? 1_555 A A 26 N6 ? ? A U 9 A A 26 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog24 hydrog ? ? A A 10 N3 ? ? ? 1_555 A A 11 N6 ? ? A A 10 A A 11 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog25 hydrog ? ? A A 11 N1 ? ? ? 1_555 A U 27 N3 ? ? A A 11 A U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 27 O4 ? ? A A 11 A U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 12 N1 ? ? ? 1_555 A U 25 O2 ? ? A G 12 A U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog28 hydrog ? ? A G 12 O6 ? ? ? 1_555 A U 25 N3 ? ? A G 12 A U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog29 hydrog ? ? A G 12 N2 ? ? ? 1_555 A U 27 O4 ? ? A G 12 A U 27 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog30 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 24 N3 ? ? A G 13 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 24 O2 ? ? A G 13 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 24 N4 ? ? A G 13 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 14 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 14 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 14 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 22 N3 ? ? A A 15 A U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 22 O4 ? ? A A 15 A U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 16 N3 ? ? ? 1_555 A G 21 O6 ? ? A U 16 A G 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog39 hydrog ? ? A U 16 O2 ? ? ? 1_555 A G 21 N1 ? ? A U 16 A G 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog40 hydrog ? ? A G 17 N2 ? ? ? 1_555 A A 20 N7 ? ? A G 17 A A 20 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O2'" ? A A 10 ? A A 10 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O6 ? A G 12 ? A G 12 ? 1_555 65.2 ? 2 O ? G HOH . ? A HOH 227 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 228 ? 1_555 78.1 ? 3 O ? G HOH . ? A HOH 227 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 230 ? 1_555 74.6 ? 4 O ? G HOH . ? A HOH 228 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 230 ? 1_555 89.7 ? 5 O ? G HOH . ? A HOH 227 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 231 ? 1_555 86.2 ? 6 O ? G HOH . ? A HOH 228 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 231 ? 1_555 72.9 ? 7 O ? G HOH . ? A HOH 230 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? G HOH . ? A HOH 231 ? 1_555 156.6 ? 8 O ? G HOH . ? A HOH 214 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 217 ? 1_555 94.5 ? 9 O ? G HOH . ? A HOH 214 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 226 ? 1_555 90.7 ? 10 O ? G HOH . ? A HOH 217 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 226 ? 1_555 79.8 ? 11 O ? G HOH . ? A HOH 214 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 239 ? 1_555 83.4 ? 12 O ? G HOH . ? A HOH 217 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 239 ? 1_555 164.9 ? 13 O ? G HOH . ? A HOH 226 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 239 ? 1_555 85.2 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 101 ? 4 'BINDING SITE FOR RESIDUE MG A 101' AC2 Software A MG 102 ? 4 'BINDING SITE FOR RESIDUE MG A 102' AC3 Software A MG 103 ? 2 'BINDING SITE FOR RESIDUE MG A 103' AC4 Software A MG 104 ? 4 'BINDING SITE FOR RESIDUE MG A 104' AC5 Software A MG 105 ? 3 'BINDING SITE FOR RESIDUE MG A 105' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HOH G . ? HOH A 227 . ? 1_555 ? 2 AC1 4 HOH G . ? HOH A 228 . ? 1_555 ? 3 AC1 4 HOH G . ? HOH A 230 . ? 1_555 ? 4 AC1 4 HOH G . ? HOH A 231 . ? 1_555 ? 5 AC2 4 HOH G . ? HOH A 214 . ? 1_555 ? 6 AC2 4 HOH G . ? HOH A 217 . ? 1_555 ? 7 AC2 4 HOH G . ? HOH A 226 . ? 1_555 ? 8 AC2 4 HOH G . ? HOH A 239 . ? 1_555 ? 9 AC3 2 G A 32 ? G A 32 . ? 1_555 ? 10 AC3 2 HOH G . ? HOH A 207 . ? 1_555 ? 11 AC4 4 A A 10 ? A A 10 . ? 1_555 ? 12 AC4 4 A A 11 ? A A 11 . ? 1_555 ? 13 AC4 4 G A 12 ? G A 12 . ? 1_555 ? 14 AC4 4 G A 13 ? G A 13 . ? 1_555 ? 15 AC5 3 C A 14 ? C A 14 . ? 6_445 ? 16 AC5 3 G A 28 ? G A 28 . ? 1_555 ? 17 AC5 3 C A 29 ? C A 29 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A A 10 ? ? P A A 10 ? ? OP2 A A 10 ? ? 99.25 105.70 -6.45 0.90 N 2 1 "C3'" A U 27 ? ? "O3'" A U 27 ? ? P A G 28 ? ? 128.04 119.70 8.34 1.20 Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MG MG MG N N 114 U OP3 O N N 115 U P P N N 116 U OP1 O N N 117 U OP2 O N N 118 U "O5'" O N N 119 U "C5'" C N N 120 U "C4'" C N R 121 U "O4'" O N N 122 U "C3'" C N S 123 U "O3'" O N N 124 U "C2'" C N R 125 U "O2'" O N N 126 U "C1'" C N R 127 U N1 N N N 128 U C2 C N N 129 U O2 O N N 130 U N3 N N N 131 U C4 C N N 132 U O4 O N N 133 U C5 C N N 134 U C6 C N N 135 U HOP3 H N N 136 U HOP2 H N N 137 U "H5'" H N N 138 U "H5''" H N N 139 U "H4'" H N N 140 U "H3'" H N N 141 U "HO3'" H N N 142 U "H2'" H N N 143 U "HO2'" H N N 144 U "H1'" H N N 145 U H3 H N N 146 U H5 H N N 147 U H6 H N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4FNJ 'double helix' 4FNJ 'a-form double helix' 4FNJ tetraloop 4FNJ 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 35 1_555 0.308 -0.307 -0.024 -5.465 -14.560 4.157 1 A_C1:G35_A A 1 ? A 35 ? 19 1 1 A U 2 1_555 A U 34 1_555 -2.470 -1.890 0.256 -7.120 -16.398 11.599 2 A_U2:U34_A A 2 ? A 34 ? 16 1 1 A G 3 1_555 A C 33 1_555 -0.295 -0.364 -0.002 -2.159 -14.454 2.200 3 A_G3:C33_A A 3 ? A 33 ? 19 1 1 A C 4 1_555 A G 32 1_555 0.728 -0.159 0.239 -1.031 -6.688 8.413 4 A_C4:G32_A A 4 ? A 32 ? 19 1 1 A U 5 1_555 A U 31 1_555 -2.631 -1.330 -0.096 5.619 -7.124 -25.984 5 A_U5:U31_A A 5 ? A 31 ? ? ? 1 A G 6 1_555 A C 30 1_555 -0.260 -0.283 0.071 5.872 -2.490 -1.440 6 A_G6:C30_A A 6 ? A 30 ? 19 1 1 A G 7 1_555 A C 29 1_555 -0.182 -0.151 -0.070 -3.821 -11.106 1.559 7 A_G7:C29_A A 7 ? A 29 ? 19 1 1 A C 8 1_555 A G 28 1_555 -0.061 -0.228 0.098 0.940 -6.938 -0.649 8 A_C8:G28_A A 8 ? A 28 ? 19 1 1 A A 26 1_555 A U 9 1_555 -4.464 -2.702 -0.368 18.180 -2.409 -86.460 9 A_A26:U9_A A 26 ? A 9 ? 24 4 1 A A 11 1_555 A U 27 1_555 -0.142 -0.066 -0.526 -25.749 24.433 -3.216 10 A_A11:U27_A A 11 ? A 27 ? 20 1 1 A G 12 1_555 A U 25 1_555 -2.475 -0.824 -0.049 -2.352 -16.202 -3.350 11 A_G12:U25_A A 12 ? A 25 ? 28 1 1 A G 13 1_555 A C 24 1_555 -0.367 -0.133 -0.027 -4.934 -16.366 2.750 12 A_G13:C24_A A 13 ? A 24 ? 19 1 1 A C 14 1_555 A G 23 1_555 0.253 -0.162 0.083 -3.124 -12.394 0.025 13 A_C14:G23_A A 14 ? A 23 ? 19 1 1 A A 15 1_555 A U 22 1_555 -0.003 -0.103 -0.060 -1.110 -12.071 6.357 14 A_A15:U22_A A 15 ? A 22 ? 20 1 1 A U 16 1_555 A G 21 1_555 2.310 -0.371 -0.286 3.120 -1.006 8.473 15 A_U16:G21_A A 16 ? A 21 ? 28 1 1 A G 17 1_555 A A 20 1_555 7.013 -5.209 0.534 16.202 1.005 -11.140 16 A_G17:A20_A A 17 ? A 20 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 35 1_555 A U 2 1_555 A U 34 1_555 0.232 -0.843 2.987 -11.329 19.434 26.563 -3.891 -1.833 1.764 35.318 20.588 34.677 1 AA_C1U2:U34G35_AA A 1 ? A 35 ? A 2 ? A 34 ? 1 A U 2 1_555 A U 34 1_555 A G 3 1_555 A C 33 1_555 -0.806 -0.713 3.114 -2.740 8.166 43.967 -1.636 0.823 2.985 10.785 3.619 44.761 2 AA_U2G3:C33U34_AA A 2 ? A 34 ? A 3 ? A 33 ? 1 A G 3 1_555 A C 33 1_555 A C 4 1_555 A G 32 1_555 0.110 -1.041 3.236 -1.311 4.316 36.728 -2.205 -0.344 3.092 6.818 2.072 36.995 3 AA_G3C4:G32C33_AA A 3 ? A 33 ? A 4 ? A 32 ? 1 A C 4 1_555 A G 32 1_555 A U 5 1_555 A U 31 1_555 -1.558 -2.515 2.899 -0.454 8.729 13.288 -13.394 5.410 1.095 33.402 1.735 15.894 4 AA_C4U5:U31G32_AA A 4 ? A 32 ? A 5 ? A 31 ? 1 A U 5 1_555 A U 31 1_555 A G 6 1_555 A C 30 1_555 1.538 -1.570 3.266 -1.542 5.203 46.847 -2.375 -2.045 3.036 6.519 1.932 47.143 5 AA_U5G6:C30U31_AA A 5 ? A 31 ? A 6 ? A 30 ? 1 A G 6 1_555 A C 30 1_555 A G 7 1_555 A C 29 1_555 0.709 -1.929 3.429 1.346 6.053 33.679 -4.233 -0.993 3.071 10.338 -2.298 34.229 6 AA_G6G7:C29C30_AA A 6 ? A 30 ? A 7 ? A 29 ? 1 A G 7 1_555 A C 29 1_555 A C 8 1_555 A G 28 1_555 -0.744 -2.621 3.056 -3.115 1.943 26.878 -6.039 0.863 2.928 4.156 6.662 27.123 7 AA_G7C8:G28C29_AA A 7 ? A 29 ? A 8 ? A 28 ? 1 A C 8 1_555 A G 28 1_555 A A 26 1_555 A U 9 1_555 0.062 -4.768 -0.567 -129.990 -107.785 64.032 -2.097 -0.387 2.235 -55.558 67.004 170.562 8 AA_C8A26:U9G28_AA A 8 ? A 28 ? A 26 ? A 9 ? 1 A A 26 1_555 A U 9 1_555 A A 11 1_555 A U 27 1_555 -2.569 3.583 2.679 -147.372 -20.328 64.175 2.063 -0.298 3.184 -11.144 80.789 153.633 9 AA_A26A11:U27U9_AA A 26 ? A 9 ? A 11 ? A 27 ? 1 A A 11 1_555 A U 27 1_555 A G 12 1_555 A U 25 1_555 4.572 -0.264 2.658 -10.370 27.062 62.842 -0.953 -4.333 1.746 24.623 9.436 68.576 10 AA_A11G12:U25U27_AA A 11 ? A 27 ? A 12 ? A 25 ? 1 A G 12 1_555 A U 25 1_555 A G 13 1_555 A C 24 1_555 -0.072 -1.663 3.376 -1.726 5.617 37.962 -3.227 -0.105 3.108 8.572 2.634 38.398 11 AA_G12G13:C24U25_AA A 12 ? A 25 ? A 13 ? A 24 ? 1 A G 13 1_555 A C 24 1_555 A C 14 1_555 A G 23 1_555 -0.298 -1.528 3.298 -1.295 1.885 33.710 -2.933 0.304 3.219 3.246 2.229 33.785 12 AA_G13C14:G23C24_AA A 13 ? A 24 ? A 14 ? A 23 ? 1 A C 14 1_555 A G 23 1_555 A A 15 1_555 A U 22 1_555 0.681 -1.653 3.125 2.656 10.891 29.024 -4.918 -0.825 2.414 20.778 -5.067 31.070 13 AA_C14A15:U22G23_AA A 14 ? A 23 ? A 15 ? A 22 ? 1 A A 15 1_555 A U 22 1_555 A U 16 1_555 A G 21 1_555 0.324 -1.174 3.208 2.966 8.148 37.518 -2.742 -0.142 2.916 12.465 -4.538 38.472 14 AA_A15U16:G21U22_AA A 15 ? A 22 ? A 16 ? A 21 ? 1 A U 16 1_555 A G 21 1_555 A G 17 1_555 A A 20 1_555 -1.693 -0.894 2.987 0.080 11.300 45.252 -1.968 2.147 2.699 14.421 -0.102 46.570 15 AA_U16G17:A20G21_AA A 16 ? A 21 ? A 17 ? A 20 ? # _atom_sites.entry_id 4FNJ _atom_sites.fract_transf_matrix[1][1] 0.014217 _atom_sites.fract_transf_matrix[1][2] 0.008208 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016417 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014655 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_