HEADER IMMUNE SYSTEM 20-JUN-12 4FNN TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF CPGRP-S WITH STEARIC ACID AT 2.2 A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN RECOGNITION PROTEIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PEPTIDOGLYCAN RECOGNITION PROTEIN SHORT, PGRP-S SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELUS DROMEDARIUS; SOURCE 3 ORGANISM_COMMON: CAMEL,DROMEDARIES,DROMEDARY,ONE-HUMPED CAMEL; SOURCE 4 ORGANISM_TAXID: 9838; SOURCE 5 STRAIN: CAMELUS DROMEDARIUS KEYWDS PEPTIDOGLYCAN BINDING, IMMUNE RESPONSE, SECRETED, ANTIMICROBIAL, KEYWDS 2 PGRP, ANTIBIOTIC, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.DUBE,P.SHARMA,M.SINHA,P.KAUR,S.SHARMA,T.P.SINGH REVDAT 3 13-SEP-23 4FNN 1 REMARK REVDAT 2 15-MAY-13 4FNN 1 JRNL REVDAT 1 25-JUL-12 4FNN 0 JRNL AUTH P.SHARMA,S.YAMINI,D.DUBE,A.SINGH,G.MAL,N.PANDEY,M.SINHA, JRNL AUTH 2 A.K.SINGH,S.DEY,P.KAUR,D.K.MITRA,S.SHARMA,T.P.SINGH JRNL TITL STRUCTURAL BASIS OF THE BINDING OF FATTY ACIDS TO JRNL TITL 2 PEPTIDOGLYCAN RECOGNITION PROTEIN, PGRP-S THROUGH SECOND JRNL TITL 3 BINDING SITE. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 529 1 2013 JRNL REFN ISSN 0003-9861 JRNL PMID 23149273 JRNL DOI 10.1016/J.ABB.2012.11.001 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 31454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1665 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2039 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.3340 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5344 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 515 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.74000 REMARK 3 B22 (A**2) : -3.56000 REMARK 3 B33 (A**2) : 0.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.426 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.251 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.580 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5523 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7527 ; 1.792 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 6.723 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 268 ;38.997 ;22.090 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 816 ;16.602 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;18.856 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 776 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4372 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3400 ; 0.962 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5456 ; 1.744 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2123 ; 2.706 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2071 ; 4.335 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): -22.2807 -36.9944 -45.4573 REMARK 3 T TENSOR REMARK 3 T11: 0.2548 T22: 0.1575 REMARK 3 T33: 0.3524 T12: -0.0483 REMARK 3 T13: -0.2404 T23: 0.0969 REMARK 3 L TENSOR REMARK 3 L11: 1.3595 L22: 1.1899 REMARK 3 L33: 3.3980 L12: -0.0434 REMARK 3 L13: 0.1302 L23: -0.5851 REMARK 3 S TENSOR REMARK 3 S11: -0.4623 S12: 0.0266 S13: 0.2172 REMARK 3 S21: -0.0741 S22: -0.1224 S23: 0.0993 REMARK 3 S31: -0.1892 S32: 0.1844 S33: 0.5847 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 171 REMARK 3 ORIGIN FOR THE GROUP (A): -36.0491 -15.3083 -60.4384 REMARK 3 T TENSOR REMARK 3 T11: 0.4913 T22: 0.1572 REMARK 3 T33: 0.1713 T12: -0.1262 REMARK 3 T13: -0.2416 T23: 0.1036 REMARK 3 L TENSOR REMARK 3 L11: 3.4557 L22: 4.4816 REMARK 3 L33: 1.0209 L12: 2.0117 REMARK 3 L13: 0.0878 L23: 0.5423 REMARK 3 S TENSOR REMARK 3 S11: 0.4438 S12: -0.0963 S13: -0.0794 REMARK 3 S21: 0.7710 S22: -0.2416 S23: -0.2703 REMARK 3 S31: 0.0834 S32: -0.0100 S33: -0.2022 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 171 REMARK 3 ORIGIN FOR THE GROUP (A): -26.5208 -38.2065 -8.4868 REMARK 3 T TENSOR REMARK 3 T11: 0.1240 T22: 0.1130 REMARK 3 T33: 0.2902 T12: 0.0417 REMARK 3 T13: -0.1130 T23: -0.0598 REMARK 3 L TENSOR REMARK 3 L11: 0.9631 L22: 1.5494 REMARK 3 L33: 2.0330 L12: -0.0394 REMARK 3 L13: -0.1031 L23: -0.1519 REMARK 3 S TENSOR REMARK 3 S11: 0.0088 S12: 0.0805 S13: -0.0454 REMARK 3 S21: -0.0918 S22: -0.0973 S23: 0.5018 REMARK 3 S31: -0.1490 S32: 0.0359 S33: 0.0885 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 171 REMARK 3 ORIGIN FOR THE GROUP (A): -36.3392 -12.4204 -18.0819 REMARK 3 T TENSOR REMARK 3 T11: 0.3608 T22: 0.1972 REMARK 3 T33: 0.1839 T12: 0.1190 REMARK 3 T13: -0.1148 T23: -0.0866 REMARK 3 L TENSOR REMARK 3 L11: 3.0764 L22: 3.5370 REMARK 3 L33: 0.9087 L12: 0.3972 REMARK 3 L13: -0.4586 L23: -0.1345 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: 0.2609 S13: -0.5131 REMARK 3 S21: 0.5701 S22: 0.1063 S23: -0.3638 REMARK 3 S31: -0.1259 S32: -0.0329 S33: -0.1145 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4FNN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000073125. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31454 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04200 REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.12100 REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3C2X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% GLYCEROL, 6% PEG3350, PH 7.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.65450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.71800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.49200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.65450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.71800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.49200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.65450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.71800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.49200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.65450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.71800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.49200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 14 CD GLU B 14 OE2 0.067 REMARK 500 PRO D 118 CD PRO D 118 N -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 68 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 157 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 5 -75.63 -88.33 REMARK 500 ASP A 68 175.87 179.77 REMARK 500 GLU A 77 3.69 -69.11 REMARK 500 HIS A 93 -12.76 -147.65 REMARK 500 ALA A 94 31.93 -142.60 REMARK 500 PRO B 4 -87.68 -109.45 REMARK 500 CYS B 6 176.06 -52.35 REMARK 500 SER B 8 58.55 31.70 REMARK 500 ARG B 23 -19.83 -142.17 REMARK 500 HIS B 93 -21.57 -146.66 REMARK 500 PRO C 4 -82.47 -15.38 REMARK 500 ALA C 5 -170.40 172.45 REMARK 500 CYS C 6 -75.98 -133.89 REMARK 500 HIS C 93 -16.58 -142.92 REMARK 500 ALA C 94 25.04 -146.34 REMARK 500 PRO D 4 81.80 -48.75 REMARK 500 ALA D 5 88.39 -168.39 REMARK 500 CYS D 6 -153.42 52.58 REMARK 500 SER D 8 75.27 54.83 REMARK 500 ALA D 17 150.37 -43.94 REMARK 500 ALA D 39 -7.71 77.70 REMARK 500 HIS D 93 -12.54 -143.42 REMARK 500 ALA D 94 35.86 -151.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG D 158 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STE B 201 DBREF 4FNN A 1 171 UNP Q9GK12 PGRP1_CAMDR 23 193 DBREF 4FNN B 1 171 UNP Q9GK12 PGRP1_CAMDR 23 193 DBREF 4FNN C 1 171 UNP Q9GK12 PGRP1_CAMDR 23 193 DBREF 4FNN D 1 171 UNP Q9GK12 PGRP1_CAMDR 23 193 SEQRES 1 A 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 A 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 A 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 A 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 A 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 A 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 A 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 A 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 A 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 A 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 A 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 A 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 A 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 A 171 ARG ALA SEQRES 1 B 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 B 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 B 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 B 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 B 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 B 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 B 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 B 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 B 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 B 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 B 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 B 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 B 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 B 171 ARG ALA SEQRES 1 C 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 C 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 C 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 C 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 C 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 C 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 C 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 C 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 C 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 C 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 C 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 C 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 C 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 C 171 ARG ALA SEQRES 1 D 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 D 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 D 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 D 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 D 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 D 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 D 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 D 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 D 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 D 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 D 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 D 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 D 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 D 171 ARG ALA HET STE B 201 20 HETNAM STE STEARIC ACID FORMUL 5 STE C18 H36 O2 FORMUL 6 HOH *515(H2 O) HELIX 1 1 THR A 45 ASN A 63 1 19 HELIX 2 2 ALA A 94 ASN A 99 1 6 HELIX 3 3 PRO A 117 GLY A 135 1 19 HELIX 4 4 ARG A 147 VAL A 149 5 3 HELIX 5 5 GLY A 156 GLN A 164 1 9 HELIX 6 6 ALA B 5 ILE B 9 5 5 HELIX 7 7 PRO B 11 ARG B 16 5 6 HELIX 8 8 THR B 45 ASN B 63 1 19 HELIX 9 9 ALA B 94 ASN B 99 1 6 HELIX 10 10 PRO B 117 LEU B 134 1 18 HELIX 11 11 HIS B 146 GLN B 150 1 5 HELIX 12 12 GLY B 156 GLN B 164 1 9 HELIX 13 13 PRO C 11 ARG C 16 1 6 HELIX 14 14 THR C 45 ASN C 63 1 19 HELIX 15 15 TRP C 98 PRO C 100 5 3 HELIX 16 16 PRO C 117 LEU C 134 1 18 HELIX 17 17 ARG C 147 VAL C 149 5 3 HELIX 18 18 GLY C 156 THR C 165 1 10 HELIX 19 19 PRO D 11 TRP D 15 5 5 HELIX 20 20 THR D 45 ARG D 62 1 18 HELIX 21 21 ALA D 94 ASN D 99 1 6 HELIX 22 22 PRO D 117 LEU D 134 1 18 HELIX 23 23 ARG D 147 VAL D 149 5 3 HELIX 24 24 GLY D 156 GLN D 164 1 9 SHEET 1 A 5 VAL A 81 GLU A 83 0 SHEET 2 A 5 PHE A 73 ILE A 75 -1 N LEU A 74 O TYR A 82 SHEET 3 A 5 SER A 102 PHE A 107 1 O SER A 106 N ILE A 75 SHEET 4 A 5 VAL A 30 HIS A 37 1 N VAL A 34 O ILE A 103 SHEET 5 A 5 LEU A 137 GLY A 145 1 O LYS A 144 N VAL A 33 SHEET 1 B 5 VAL B 81 GLU B 83 0 SHEET 2 B 5 PHE B 73 ILE B 75 -1 N LEU B 74 O TYR B 82 SHEET 3 B 5 SER B 102 PHE B 107 1 O SER B 106 N ILE B 75 SHEET 4 B 5 VAL B 30 HIS B 37 1 N VAL B 34 O ILE B 103 SHEET 5 B 5 LEU B 137 GLY B 145 1 O GLU B 142 N ARG B 31 SHEET 1 C 6 ILE C 9 VAL C 10 0 SHEET 2 C 6 VAL C 81 GLU C 83 1 O VAL C 81 N VAL C 10 SHEET 3 C 6 PHE C 73 ILE C 75 -1 N LEU C 74 O TYR C 82 SHEET 4 C 6 SER C 102 PHE C 107 1 O SER C 106 N ILE C 75 SHEET 5 C 6 VAL C 30 HIS C 37 1 N VAL C 34 O ILE C 103 SHEET 6 C 6 LEU C 137 GLY C 145 1 O GLU C 142 N VAL C 33 SHEET 1 D 5 VAL D 81 GLU D 83 0 SHEET 2 D 5 PHE D 73 ILE D 75 -1 N LEU D 74 O TYR D 82 SHEET 3 D 5 SER D 102 PHE D 107 1 O SER D 106 N ILE D 75 SHEET 4 D 5 VAL D 30 HIS D 37 1 N SER D 36 O ILE D 105 SHEET 5 D 5 LEU D 137 GLY D 145 1 O ARG D 138 N VAL D 30 SSBOND 1 CYS A 6 CYS A 130 1555 1555 2.04 SSBOND 2 CYS A 22 CYS A 67 1555 1555 2.07 SSBOND 3 CYS A 43 CYS A 49 1555 1555 2.04 SSBOND 4 CYS B 6 CYS B 130 1555 1555 1.99 SSBOND 5 CYS B 22 CYS B 67 1555 1555 2.07 SSBOND 6 CYS B 43 CYS B 49 1555 1555 2.02 SSBOND 7 CYS C 6 CYS C 130 1555 1555 2.03 SSBOND 8 CYS C 22 CYS C 67 1555 1555 2.04 SSBOND 9 CYS C 43 CYS C 49 1555 1555 2.01 SSBOND 10 CYS D 6 CYS D 130 1555 1555 2.04 SSBOND 11 CYS D 22 CYS D 67 1555 1555 2.08 SSBOND 12 CYS D 43 CYS D 49 1555 1555 2.10 CISPEP 1 PRO A 4 ALA A 5 0 -5.07 CISPEP 2 ALA A 5 CYS A 6 0 -16.35 CISPEP 3 ARG A 28 PRO A 29 0 -5.41 CISPEP 4 SER A 154 PRO A 155 0 11.32 CISPEP 5 GLU B 1 ASP B 2 0 11.36 CISPEP 6 PRO B 3 PRO B 4 0 -13.09 CISPEP 7 ARG B 28 PRO B 29 0 9.56 CISPEP 8 SER B 154 PRO B 155 0 10.88 CISPEP 9 GLU C 1 ASP C 2 0 -3.65 CISPEP 10 ARG C 28 PRO C 29 0 -0.19 CISPEP 11 SER C 154 PRO C 155 0 14.78 CISPEP 12 ARG D 28 PRO D 29 0 4.93 CISPEP 13 SER D 154 PRO D 155 0 18.93 SITE 1 AC1 6 ALA A 129 ASP B 2 PRO B 4 CYS B 6 SITE 2 AC1 6 ARG D 31 ARG D 138 CRYST1 89.309 101.436 162.984 90.00 90.00 90.00 I 2 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011197 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009858 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006136 0.00000