HEADER GENE REGULATION 20-JUN-12 4FO0 TITLE HUMAN ACTIN-RELATED PROTEIN ARP8 IN ITS ATP-BOUND STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN-RELATED PROTEIN 8; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HARP8, INO80 COMPLEX SUBUNIT N; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACTR8, ACTR8: ARP8 ACTIN-RELATED PROTEIN 8 HOMOLOG (YEAST), SOURCE 6 ARP8, INO80N; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-28 KEYWDS ACTIN-RELATED PROTEIN, CHROMATIN REMODELING, NUCLEOSOMES, NUCLEUS, KEYWDS 2 GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR C.B.GERHOLD,K.LAKOMEK,F.U.SEIFERT,K.-P.HOPFNER REVDAT 4 13-SEP-23 4FO0 1 REMARK SEQADV LINK REVDAT 3 25-OCT-17 4FO0 1 REMARK REVDAT 2 09-JAN-13 4FO0 1 JRNL REVDAT 1 26-SEP-12 4FO0 0 JRNL AUTH C.B.GERHOLD,D.D.WINKLER,K.LAKOMEK,F.U.SEIFERT,S.FENN, JRNL AUTH 2 B.KESSLER,G.WITTE,K.LUGER,K.P.HOPFNER JRNL TITL STRUCTURE OF ACTIN-RELATED PROTEIN 8 AND ITS CONTRIBUTION TO JRNL TITL 2 NUCLEOSOME BINDING. JRNL REF NUCLEIC ACIDS RES. V. 40 11036 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22977180 JRNL DOI 10.1093/NAR/GKS842 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 32837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9038 - 5.9484 0.98 2734 132 0.1628 0.1765 REMARK 3 2 5.9484 - 4.7231 1.00 2646 145 0.1438 0.1868 REMARK 3 3 4.7231 - 4.1265 0.99 2592 162 0.1108 0.1459 REMARK 3 4 4.1265 - 3.7494 0.99 2589 142 0.1282 0.1942 REMARK 3 5 3.7494 - 3.4808 0.99 2618 131 0.1443 0.1925 REMARK 3 6 3.4808 - 3.2757 1.00 2608 135 0.1630 0.2205 REMARK 3 7 3.2757 - 3.1117 1.00 2570 147 0.1866 0.2522 REMARK 3 8 3.1117 - 2.9762 1.00 2578 139 0.2060 0.2934 REMARK 3 9 2.9762 - 2.8617 0.99 2589 125 0.2076 0.2806 REMARK 3 10 2.8617 - 2.7629 0.98 2545 135 0.2289 0.2908 REMARK 3 11 2.7629 - 2.6766 0.99 2556 137 0.2617 0.2910 REMARK 3 12 2.6766 - 2.6001 0.99 2539 143 0.3060 0.3513 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 47.91 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.41570 REMARK 3 B22 (A**2) : 2.89730 REMARK 3 B33 (A**2) : 2.51830 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4229 REMARK 3 ANGLE : 1.185 5722 REMARK 3 CHIRALITY : 0.076 613 REMARK 3 PLANARITY : 0.005 725 REMARK 3 DIHEDRAL : 16.284 1598 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FO0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000073138. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97641 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32838 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.78700 REMARK 200 R SYM FOR SHELL (I) : 0.06700 REMARK 200 FOR SHELL : 2.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3QB0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.9 M NACL, 0.5 % (V/V) METHANOL, 50 REMARK 280 MM MES PH 6.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.67500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.67500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.43750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.63100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.43750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.63100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 86.67500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.43750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.63100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 86.67500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.43750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 75.63100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYSIS USING PISA SUGGESTS HUMAN ARP8 TO FORM A DIMER. REMARK 300 AND THE CALCULATED PUTATIVE DIMER FORMATION IS DISCUSSED IN THE REMARK 300 MANUSCRIPT SERVING A PRIMARY CITATION. HOWEVER, AS DISCUSSED IN REMARK 300 THIS ACCOMPANYING MANUSCRIPT, THE DIMER FORMATION MIGHT BE REMARK 300 INDUCIBLE IN VIVO AND/OR TRANSIENT, BUT DOES NOT SEEM TO STABLY REMARK 300 OCCUR IN SOLUTION AS DEDUCED BY SAXS AND SLS EXPERIMENT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -80.87500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -86.67500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 411 REMARK 465 SER A 412 REMARK 465 GLN A 413 REMARK 465 GLY A 414 REMARK 465 ASP A 415 REMARK 465 PRO A 416 REMARK 465 GLU A 417 REMARK 465 ASP A 418 REMARK 465 PRO A 419 REMARK 465 HIS A 420 REMARK 465 ASP A 421 REMARK 465 GLU A 422 REMARK 465 HIS A 423 REMARK 465 TYR A 424 REMARK 465 LEU A 425 REMARK 465 LEU A 426 REMARK 465 ALA A 427 REMARK 465 THR A 428 REMARK 465 GLN A 429 REMARK 465 SER A 430 REMARK 465 LYS A 431 REMARK 465 GLN A 432 REMARK 465 GLU A 433 REMARK 465 GLN A 434 REMARK 465 SER A 435 REMARK 465 ALA A 436 REMARK 465 LYS A 437 REMARK 465 ALA A 438 REMARK 465 THR A 439 REMARK 465 ALA A 440 REMARK 465 ASP A 441 REMARK 465 ARG A 442 REMARK 465 LYS A 443 REMARK 465 SER A 444 REMARK 465 ALA A 445 REMARK 465 SER A 446 REMARK 465 LYS A 447 REMARK 465 PRO A 448 REMARK 465 ILE A 449 REMARK 465 GLY A 450 REMARK 465 PHE A 451 REMARK 465 GLU A 452 REMARK 465 GLY A 453 REMARK 465 ASP A 454 REMARK 465 LEU A 455 REMARK 465 ARG A 456 REMARK 465 GLY A 457 REMARK 465 GLN A 458 REMARK 465 SER A 459 REMARK 465 SER A 460 REMARK 465 ASP A 461 REMARK 465 LEU A 462 REMARK 465 PRO A 463 REMARK 465 GLU A 464 REMARK 465 ARG A 465 REMARK 465 LEU A 466 REMARK 465 HIS A 467 REMARK 465 SER A 468 REMARK 465 GLN A 469 REMARK 465 GLU A 470 REMARK 465 VAL A 471 REMARK 465 ASP A 472 REMARK 465 LEU A 473 REMARK 465 GLY A 474 REMARK 465 SER A 475 REMARK 465 ALA A 476 REMARK 465 GLN A 477 REMARK 465 GLY A 478 REMARK 465 ASP A 479 REMARK 465 GLY A 480 REMARK 465 LEU A 481 REMARK 465 MET A 482 REMARK 465 ALA A 483 REMARK 465 GLY A 484 REMARK 465 ASN A 485 REMARK 465 ASP A 486 REMARK 465 SER A 487 REMARK 465 GLU A 488 REMARK 465 GLU A 489 REMARK 465 ALA A 490 REMARK 465 LEU A 491 REMARK 465 THR A 492 REMARK 465 ALA A 493 REMARK 465 LEU A 494 REMARK 465 MET A 495 REMARK 465 SER A 496 REMARK 465 ARG A 497 REMARK 465 LYS A 498 REMARK 465 THR A 499 REMARK 465 ALA A 500 REMARK 465 ILE A 501 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 330 O HOH A 857 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 91 -77.46 -124.12 REMARK 500 MET A 543 34.14 -84.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 702 O1G REMARK 620 2 ATP A 702 O2B 82.1 REMARK 620 3 HOH A 844 O 83.4 78.3 REMARK 620 4 HOH A 901 O 152.2 75.7 76.0 REMARK 620 5 HOH A 905 O 105.2 164.5 88.9 92.9 REMARK 620 6 HOH A 907 O 109.7 91.4 162.4 87.7 98.6 REMARK 620 N 1 2 3 4 5 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 650 SHEET REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 711 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QB0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ACTIN-RELATED PROTEIN ARP4 FROM S. CEREVISIAE REMARK 900 COMPLEXED WITH ATP DBREF 4FO0 A 34 624 UNP Q9H981 ARP8_HUMAN 34 624 SEQADV 4FO0 GLY A 32 UNP Q9H981 EXPRESSION TAG SEQADV 4FO0 PRO A 33 UNP Q9H981 EXPRESSION TAG SEQRES 1 A 593 GLY PRO LEU VAL PRO GLU SER LEU GLN GLU GLN ILE GLN SEQRES 2 A 593 SER ASN PHE ILE ILE VAL ILE HIS PRO GLY SER THR THR SEQRES 3 A 593 LEU ARG ILE GLY ARG ALA THR ASP THR LEU PRO ALA SER SEQRES 4 A 593 ILE PRO HIS VAL ILE ALA ARG ARG HIS LYS GLN GLN GLY SEQRES 5 A 593 GLN PRO LEU TYR LYS ASP SER TRP LEU LEU ARG GLU GLY SEQRES 6 A 593 LEU ASN LYS PRO GLU SER ASN GLU GLN ARG GLN ASN GLY SEQRES 7 A 593 LEU LYS MET VAL ASP GLN ALA ILE TRP SER LYS LYS MET SEQRES 8 A 593 SER ASN GLY THR ARG ARG ILE PRO VAL SER PRO GLU GLN SEQRES 9 A 593 ALA ARG SER TYR ASN LYS GLN MET ARG PRO ALA ILE LEU SEQRES 10 A 593 ASP HIS CYS SER GLY ASN LYS TRP THR ASN THR SER HIS SEQRES 11 A 593 HIS PRO GLU TYR LEU VAL GLY GLU GLU ALA LEU TYR VAL SEQRES 12 A 593 ASN PRO LEU ASP CYS TYR ASN ILE HIS TRP PRO ILE ARG SEQRES 13 A 593 ARG GLY GLN LEU ASN ILE HIS PRO GLY PRO GLY GLY SER SEQRES 14 A 593 LEU THR ALA VAL LEU ALA ASP ILE GLU VAL ILE TRP SER SEQRES 15 A 593 HIS ALA ILE GLN LYS TYR LEU GLU ILE PRO LEU LYS ASP SEQRES 16 A 593 LEU LYS TYR TYR ARG CYS ILE LEU LEU ILE PRO ASP ILE SEQRES 17 A 593 TYR ASN LYS GLN HIS VAL LYS GLU LEU VAL ASN MET ILE SEQRES 18 A 593 LEU MET LYS MET GLY PHE SER GLY ILE VAL VAL HIS GLN SEQRES 19 A 593 GLU SER VAL CYS ALA THR TYR GLY SER GLY LEU SER SER SEQRES 20 A 593 THR CYS ILE VAL ASP VAL GLY ASP GLN LYS THR SER VAL SEQRES 21 A 593 CYS CYS VAL GLU ASP GLY VAL SER HIS ARG ASN THR ARG SEQRES 22 A 593 LEU CYS LEU ALA TYR GLY GLY SER ASP VAL SER ARG CYS SEQRES 23 A 593 PHE TYR TRP LEU MET GLN ARG ALA GLY PHE PRO TYR ARG SEQRES 24 A 593 GLU CYS GLN LEU THR ASN LYS MET ASP CYS LEU LEU LEU SEQRES 25 A 593 GLN HIS LEU LYS GLU THR PHE CYS HIS LEU ASP GLN ASP SEQRES 26 A 593 ILE SER GLY LEU GLN ASP HIS GLU PHE GLN ILE ARG HIS SEQRES 27 A 593 PRO ASP SER PRO ALA LEU LEU TYR GLN PHE ARG LEU GLY SEQRES 28 A 593 ASP GLU LYS LEU GLN ALA PRO MET ALA LEU PHE TYR PRO SEQRES 29 A 593 ALA THR PHE GLY ILE VAL GLY GLN LYS MET THR THR LEU SEQRES 30 A 593 GLN HIS ARG SER GLN GLY ASP PRO GLU ASP PRO HIS ASP SEQRES 31 A 593 GLU HIS TYR LEU LEU ALA THR GLN SER LYS GLN GLU GLN SEQRES 32 A 593 SER ALA LYS ALA THR ALA ASP ARG LYS SER ALA SER LYS SEQRES 33 A 593 PRO ILE GLY PHE GLU GLY ASP LEU ARG GLY GLN SER SER SEQRES 34 A 593 ASP LEU PRO GLU ARG LEU HIS SER GLN GLU VAL ASP LEU SEQRES 35 A 593 GLY SER ALA GLN GLY ASP GLY LEU MET ALA GLY ASN ASP SEQRES 36 A 593 SER GLU GLU ALA LEU THR ALA LEU MET SER ARG LYS THR SEQRES 37 A 593 ALA ILE SER LEU PHE GLU GLY LYS ALA LEU GLY LEU ASP SEQRES 38 A 593 LYS ALA ILE LEU HIS SER ILE ASP CYS CYS SER SER ASP SEQRES 39 A 593 ASP THR LYS LYS LYS MET TYR SER SER ILE LEU VAL VAL SEQRES 40 A 593 GLY GLY GLY LEU MET PHE HIS LYS ALA GLN GLU PHE LEU SEQRES 41 A 593 GLN HIS ARG ILE LEU ASN LYS MET PRO PRO SER PHE ARG SEQRES 42 A 593 ARG ILE ILE GLU ASN VAL ASP VAL ILE THR ARG PRO LYS SEQRES 43 A 593 ASP MET ASP PRO ARG LEU ILE ALA TRP LYS GLY GLY ALA SEQRES 44 A 593 VAL LEU ALA CYS LEU ASP THR THR GLN GLU LEU TRP ILE SEQRES 45 A 593 TYR GLN ARG GLU TRP GLN ARG PHE GLY VAL ARG MET LEU SEQRES 46 A 593 ARG GLU ARG ALA ALA PHE VAL TRP HET MG A 701 1 HET ATP A 702 31 HET GOL A 703 6 HET GOL A 704 6 HET GOL A 705 6 HET GOL A 706 6 HET GOL A 707 6 HET GOL A 708 6 HET GOL A 709 6 HET GOL A 710 6 HET CL A 711 1 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG MG 2+ FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 GOL 8(C3 H8 O3) FORMUL 12 CL CL 1- FORMUL 13 HOH *144(H2 O) HELIX 1 1 GLU A 101 LYS A 120 1 20 HELIX 2 2 SER A 132 LYS A 141 1 10 HELIX 3 3 GLY A 168 TYR A 173 1 6 HELIX 4 4 LEU A 201 TYR A 219 1 19 HELIX 5 5 LEU A 224 TYR A 229 5 6 HELIX 6 6 LYS A 242 LYS A 255 1 14 HELIX 7 7 GLU A 266 SER A 274 1 9 HELIX 8 8 GLY A 310 ALA A 325 1 16 HELIX 9 9 LYS A 337 CYS A 351 1 15 HELIX 10 10 ASP A 383 PHE A 393 1 11 HELIX 11 11 LEU A 503 LYS A 507 1 5 HELIX 12 12 LEU A 511 CYS A 521 1 11 HELIX 13 13 ASP A 525 SER A 533 1 9 HELIX 14 14 ALA A 547 MET A 559 1 13 HELIX 15 15 PRO A 561 ILE A 567 1 7 HELIX 16 16 LEU A 583 CYS A 594 1 12 HELIX 17 17 ASP A 596 LEU A 601 5 6 HELIX 18 18 GLN A 605 PHE A 611 1 7 HELIX 19 19 VAL A 613 ALA A 620 1 8 SHEET 1 A 5 LEU A 67 PRO A 72 0 SHEET 2 A 5 THR A 57 ARG A 62 -1 N LEU A 58 O ILE A 71 SHEET 3 A 5 ILE A 48 GLY A 54 -1 N VAL A 50 O GLY A 61 SHEET 4 A 5 ARG A 231 ILE A 236 1 O ILE A 233 N ILE A 51 SHEET 5 A 5 GLY A 260 GLN A 265 1 O HIS A 264 N ILE A 236 SHEET 1 B 4 GLU A 164 VAL A 167 0 SHEET 2 B 4 ILE A 75 HIS A 79 -1 N ALA A 76 O LEU A 166 SHEET 3 B 4 TYR A 180 TRP A 184 -1 O ASN A 181 N ARG A 77 SHEET 4 B 4 LEU A 86 TRP A 91 1 SHEET 1 C 3 MET A 143 ASP A 149 0 SHEET 2 C 3 ALA A 374 LEU A 381 -1 O ALA A 374 N LEU A 148 SHEET 3 C 3 GLN A 361 ILE A 367 -1 N PHE A 365 O TYR A 377 SHEET 1 D 6 THR A 406 GLN A 409 0 SHEET 2 D 6 ARG A 304 LEU A 307 -1 N CYS A 306 O THR A 407 SHEET 3 D 6 THR A 289 GLU A 295 -1 N THR A 289 O LEU A 307 SHEET 4 D 6 SER A 278 VAL A 284 -1 N ILE A 281 O CYS A 292 SHEET 5 D 6 SER A 534 VAL A 538 1 O VAL A 538 N VAL A 282 SHEET 6 D 6 VAL A 570 THR A 574 1 O ILE A 573 N VAL A 537 LINK MG MG A 701 O1G ATP A 702 1555 1555 2.10 LINK MG MG A 701 O2B ATP A 702 1555 1555 2.18 LINK MG MG A 701 O HOH A 844 1555 1555 2.11 LINK MG MG A 701 O HOH A 901 1555 1555 2.55 LINK MG MG A 701 O HOH A 905 1555 1555 2.17 LINK MG MG A 701 O HOH A 907 1555 1555 2.21 SITE 1 AC1 6 LYS A 288 ATP A 702 HOH A 844 HOH A 901 SITE 2 AC1 6 HOH A 905 HOH A 907 SITE 1 AC2 27 GLY A 54 SER A 55 THR A 56 THR A 57 SITE 2 AC2 27 ARG A 59 GLY A 285 ASP A 286 GLN A 287 SITE 3 AC2 27 LYS A 288 GLY A 311 GLN A 344 LYS A 347 SITE 4 AC2 27 GLU A 348 GLY A 539 GLY A 540 GLY A 541 SITE 5 AC2 27 MET A 543 PHE A 544 MG A 701 HOH A 809 SITE 6 AC2 27 HOH A 813 HOH A 814 HOH A 815 HOH A 844 SITE 7 AC2 27 HOH A 845 HOH A 901 HOH A 930 SITE 1 AC3 8 GLN A 105 PRO A 395 ALA A 396 PHE A 398 SITE 2 AC3 8 GLY A 399 ILE A 400 MET A 405 ALA A 508 SITE 1 AC4 6 GLY A 153 ASN A 154 LYS A 155 TYR A 173 SITE 2 AC4 6 HOH A 823 HOH A 940 SITE 1 AC5 7 GLN A 107 LEU A 110 LYS A 111 ASP A 114 SITE 2 AC5 7 ASP A 149 HIS A 150 HOH A 871 SITE 1 AC6 5 TYR A 329 GLU A 331 GLN A 333 ASP A 339 SITE 2 AC6 5 HOH A 939 SITE 1 AC7 3 PHE A 350 HIS A 363 LYS A 385 SITE 1 AC8 8 TRP A 156 THR A 157 ASN A 158 THR A 159 SITE 2 AC8 8 SER A 160 ASN A 175 ASP A 178 HOH A 919 SITE 1 AC9 7 PRO A 176 THR A 335 ASN A 336 LYS A 337 SITE 2 AC9 7 MET A 338 HOH A 842 HOH A 929 SITE 1 BC1 4 GLN A 44 SER A 45 ALA A 593 CYS A 594 SITE 1 BC2 3 MET A 579 ASP A 580 LYS A 587 CRYST1 80.875 151.262 173.350 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012365 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005769 0.00000