HEADER    TRANSFERASE, LYASE/DNA                  20-JUN-12   4FO6              
TITLE     CRYSTAL STRUCTURE OF THE PRE-CATALYTIC TERNARY COMPLEX OF POLYMERASE  
TITLE    2 LAMBDA WITH A DATP ANALOG OPPOSITE A TEMPLATING T AND AN RCMP AT THE 
TITLE    3 PRIMER TERMINUS.                                                     
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA POLYMERASE LAMBDA;                                     
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: LOOP MUTANT OF DNA POLYMERASE LAMBDA;                      
COMPND   5 SYNONYM: POL LAMBDA, DNA POLYMERASE BETA-2, POL BETA2, DNA POLYMERASE
COMPND   6 KAPPA;                                                               
COMPND   7 EC: 2.7.7.7, 4.2.99.-;                                               
COMPND   8 ENGINEERED: YES;                                                     
COMPND   9 MUTATION: YES;                                                       
COMPND  10 MOL_ID: 2;                                                           
COMPND  11 MOLECULE: 5'-D(*CP*GP*GP*CP*TP*GP*TP*AP*CP*TP*G)-3';                 
COMPND  12 CHAIN: T;                                                            
COMPND  13 ENGINEERED: YES;                                                     
COMPND  14 MOL_ID: 3;                                                           
COMPND  15 MOLECULE: 5'-D(*CP*AP*GP*TP*AP)-R(P*C)-3';                           
COMPND  16 CHAIN: P;                                                            
COMPND  17 ENGINEERED: YES;                                                     
COMPND  18 MOL_ID: 4;                                                           
COMPND  19 MOLECULE: 5'-D(P*GP*CP*CP*G)-3';                                     
COMPND  20 CHAIN: D;                                                            
COMPND  21 ENGINEERED: YES;                                                     
COMPND  22 MOL_ID: 5;                                                           
COMPND  23 MOLECULE: 5'-D(P*TP*AP*CP*TP*G)-3';                                  
COMPND  24 CHAIN: H;                                                            
COMPND  25 ENGINEERED: YES;                                                     
COMPND  26 MOL_ID: 6;                                                           
COMPND  27 MOLECULE: 5'-D(P*CP*AP*GP*TP*A)-3';                                  
COMPND  28 CHAIN: I;                                                            
COMPND  29 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: POLL;                                                          
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 MOL_ID: 2;                                                           
SOURCE   9 SYNTHETIC: YES;                                                      
SOURCE  10 MOL_ID: 3;                                                           
SOURCE  11 SYNTHETIC: YES;                                                      
SOURCE  12 MOL_ID: 4;                                                           
SOURCE  13 SYNTHETIC: YES;                                                      
SOURCE  14 MOL_ID: 5;                                                           
SOURCE  15 SYNTHETIC: YES;                                                      
SOURCE  16 MOL_ID: 6                                                            
KEYWDS    DNA POLYMERASE, TRANSFERASE, LYASE-DNA COMPLEX                        
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    R.A.GOSAVI,A.F.MOON,T.A.KUNKEL,L.C.PEDERSEN,K.BEBENEK                 
REVDAT   2   13-SEP-23 4FO6    1       REMARK SEQADV LINK                       
REVDAT   1   11-JUL-12 4FO6    0                                                
SPRSDE     11-JUL-12 4FO6      3UQ1                                             
JRNL        AUTH   R.A.GOSAVI,A.F.MOON,T.A.KUNKEL,L.C.PEDERSEN,K.BEBENEK        
JRNL        TITL   THE CATALYTIC CYCLE FOR RIBONUCLEOTIDE INCORPORATION BY      
JRNL        TITL 2 HUMAN DNA POL LAMBDA                                         
JRNL        REF    NUCLEIC ACIDS RES.            V.  40     1 2012              
JRNL        REFN                   ISSN 0305-1048                               
JRNL        PMID   22584622                                                     
JRNL        DOI    10.1093/NAR/GKS413                                           
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.01 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (PHENIX.REFINE: 1.7.2_868)                    
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 24.03                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.350                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 95.1                           
REMARK   3   NUMBER OF REFLECTIONS             : 32824                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.192                           
REMARK   3   R VALUE            (WORKING SET) : 0.190                           
REMARK   3   FREE R VALUE                     : 0.231                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 4.900                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1603                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 24.0285 -  4.4555    0.98     3107   158  0.1883 0.2011        
REMARK   3     2  4.4555 -  3.5401    1.00     3018   153  0.1543 0.1896        
REMARK   3     3  3.5401 -  3.0937    1.00     3008   148  0.1816 0.2167        
REMARK   3     4  3.0937 -  2.8113    1.00     2971   163  0.2064 0.2854        
REMARK   3     5  2.8113 -  2.6100    1.00     2962   156  0.2013 0.2829        
REMARK   3     6  2.6100 -  2.4563    0.99     2922   152  0.2034 0.2536        
REMARK   3     7  2.4563 -  2.3334    0.99     2915   148  0.2017 0.2509        
REMARK   3     8  2.3334 -  2.2319    0.97     2851   147  0.2124 0.2481        
REMARK   3     9  2.2319 -  2.1460    0.93     2717   142  0.2313 0.2839        
REMARK   3    10  2.1460 -  2.0720    0.84     2465   129  0.2315 0.2760        
REMARK   3    11  2.0720 -  2.0073    0.75     2203   107  0.2274 0.2419        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.00                                          
REMARK   3   SHRINKAGE RADIUS   : 0.73                                          
REMARK   3   K_SOL              : 0.38                                          
REMARK   3   B_SOL              : 59.91                                         
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.560            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.070           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 28.84                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -6.50070                                             
REMARK   3    B22 (A**2) : 10.60810                                             
REMARK   3    B33 (A**2) : -3.22100                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.011           3191                                  
REMARK   3   ANGLE     :  1.159           4471                                  
REMARK   3   CHIRALITY :  0.071            501                                  
REMARK   3   PLANARITY :  0.005            453                                  
REMARK   3   DIHEDRAL  : 11.139            886                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 4FO6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-12.                  
REMARK 100 THE DEPOSITION ID IS D_1000073144.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 11-MAR-11                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 6.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 22-ID                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.0                                
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARMOSAIC 225 MM CCD               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 32824                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.000                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 25.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 95.5                               
REMARK 200  DATA REDUNDANCY                : 4.500                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : NULL                               
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.07                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 78.4                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 2.60                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : 0.29700                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.900                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS            
REMARK 200 SOFTWARE USED: PHENIX                                                
REMARK 200 STARTING MODEL: PDB ENTRY 3MGI                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 54.88                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM MES PH 6.5, 9%(V/V) PEG400, 100MM   
REMARK 280  KCL, 10MM MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       27.89000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       70.73500            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       31.82750            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       70.73500            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       27.89000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       31.82750            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D, H, I                      
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     ALA A   242                                                      
REMARK 465     GLN A   243                                                      
REMARK 465     PRO A   244                                                      
REMARK 465     SER A   245                                                      
REMARK 465     SER A   246                                                      
REMARK 465     GLN A   247                                                      
REMARK 465     LYS A   248                                                      
REMARK 465     ALA A   249                                                      
REMARK 465     THR A   250                                                      
REMARK 465     ASN A   251                                                      
REMARK 465     ARG A   438                                                      
REMARK 465     SER A   439                                                      
REMARK 465     HIS A   440                                                      
REMARK 465     ARG A   441                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     HIS A 252    CG   ND1  CD2  CE1  NE2                             
REMARK 470     ILE A 256    CD1                                                 
REMARK 470     GLU A 258    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 259    NZ                                                  
REMARK 470     GLU A 261    CD   OE1  OE2                                       
REMARK 470     LYS A 265    CE   NZ                                             
REMARK 470     LYS A 281    CE   NZ                                             
REMARK 470     ASN A 284    OD1  ND2                                            
REMARK 470     LYS A 291    CD   CE   NZ                                        
REMARK 470     GLN A 297    CG   CD   OE1  NE2                                  
REMARK 470     SER A 301    OG                                                  
REMARK 470     ILE A 302    CD1                                                 
REMARK 470     ILE A 314    CG1  CG2  CD1                                       
REMARK 470     GLU A 318    CG   CD   OE1  OE2                                  
REMARK 470     ARG A 323    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     LYS A 324    CD   CE   NZ                                        
REMARK 470     HIS A 327    ND1  CD2  CE1  NE2                                  
REMARK 470     GLU A 330    CD   OE1  OE2                                       
REMARK 470     LYS A 378    CE   NZ                                             
REMARK 470     GLU A 385    OE1  OE2                                            
REMARK 470     GLU A 396    OE1  OE2                                            
REMARK 470     LYS A 401    CD   CE   NZ                                        
REMARK 470     GLN A 404    CD   OE1  NE2                                       
REMARK 470     SER A 408    OG                                                  
REMARK 470     ILE A 443    CG1  CG2  CD1                                       
REMARK 470     ARG A 446    CZ   NH1  NH2                                       
REMARK 470     ASP A 449    OD1  OD2                                            
REMARK 470     GLN A 453    CG   CD   OE1  NE2                                  
REMARK 470     GLU A 470    CD   OE1  OE2                                       
REMARK 470     VAL A 545    CG1  CG2                                            
REMARK 470     ARG A 568    NH1  NH2                                            
REMARK 470     GLU A 569    OE1  OE2                                            
REMARK 470     GLU A 572    OE1  OE2                                            
REMARK 470      DC I   1    O5'  C5'                                            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500     DG D   1   P      DG D   1   OP3    -0.125                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500     DG T   2   C3' -  C2' -  C1' ANGL. DEV. =  -5.9 DEGREES          
REMARK 500     DG T   2   O4' -  C1' -  N9  ANGL. DEV. =   4.2 DEGREES          
REMARK 500     DG T   3   O4' -  C1' -  N9  ANGL. DEV. =  -5.3 DEGREES          
REMARK 500     DT T   5   N3  -  C4  -  O4  ANGL. DEV. =   3.7 DEGREES          
REMARK 500     DT T   5   C5  -  C4  -  O4  ANGL. DEV. =  -4.6 DEGREES          
REMARK 500     DG T   6   O4' -  C1' -  N9  ANGL. DEV. =   1.9 DEGREES          
REMARK 500     DT T   7   O4' -  C4' -  C3' ANGL. DEV. =  -5.0 DEGREES          
REMARK 500     DT T   7   O4' -  C1' -  N1  ANGL. DEV. =   2.5 DEGREES          
REMARK 500     DT T  10   O4' -  C1' -  N1  ANGL. DEV. =  -5.0 DEGREES          
REMARK 500     DG T  11   O4' -  C1' -  N9  ANGL. DEV. =   2.6 DEGREES          
REMARK 500     DG D   1   O4' -  C1' -  C2' ANGL. DEV. =   3.1 DEGREES          
REMARK 500     DG D   1   O4' -  C1' -  N9  ANGL. DEV. =   3.0 DEGREES          
REMARK 500     DC H   9   O4' -  C1' -  N1  ANGL. DEV. =   3.2 DEGREES          
REMARK 500     DG H  11   O4' -  C1' -  N9  ANGL. DEV. =   2.1 DEGREES          
REMARK 500     DC I   1   O4' -  C1' -  N1  ANGL. DEV. =   2.6 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    HIS A 255       42.60    -85.92                                   
REMARK 500    CYS A 415     -143.93   -111.23                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 602  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 300   O                                                      
REMARK 620 2 ILE A 302   O   101.2                                              
REMARK 620 3 ILE A 305   O    91.6  82.8                                        
REMARK 620 4  DC D   3   OP1 169.3  88.4  94.3                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 605  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 SER A 339   O                                                      
REMARK 620 2 ILE A 341   O   101.0                                              
REMARK 620 3 ALA A 344   O    89.7  87.9                                        
REMARK 620 4 HOH A 704   O    88.9  89.3 176.5                                  
REMARK 620 5 HOH A 728   O    69.9 167.8  84.0  98.5                            
REMARK 620 6  DA P   5   OP1 160.2  98.7  91.4  91.0  90.5                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 601  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A 427   OD1                                                    
REMARK 620 2 ASP A 429   OD1  92.6                                              
REMARK 620 3 F2A A 606   O2B 168.7  92.8                                        
REMARK 620 4 F2A A 606   O1A 102.1  87.3  88.0                                  
REMARK 620 5 F2A A 606   O3G  90.3 177.1  84.4  91.6                            
REMARK 620 6 HOH A 701   O    82.7  91.3  87.3 175.0  89.5                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MN A 604  MN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A 427   OD2                                                    
REMARK 620 2 ASP A 429   OD2  95.0                                              
REMARK 620 3 ASP A 490   OD2  90.4  92.5                                        
REMARK 620 4 F2A A 606   O1A  98.3  91.5 170.0                                  
REMARK 620 5 HOH A 823   O    85.8 173.2  94.3  81.7                            
REMARK 620 6   C P   6   O3' 168.6  93.3  81.3  89.3  86.9                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 601                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 602                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 603                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 604                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 605                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F2A A 606                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3UPQ   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF THE PRE-CATALYTIC TERNARY COMPLEX OF            
REMARK 900 POLYMERASE LAMBDA WITH AN RATP ANALOG OPPOSITE A TEMPLATING T.       
REMARK 900 RELATED ID: 3UQ0   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF THE POST-CATALYTIC PRODUCT COMPLEX OF           
REMARK 900 POLYMERASE LAMBDA WITH AN RAMP AT THE PRIMER TERMINUS.               
REMARK 900 RELATED ID: 3UQ2   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF THE POST-CATALYTIC PRODUCT COMPLEX OF           
REMARK 900 POLYMERASE LAMBDA WITH AN RAMP INSERTED OPPOSITE A TEMPLATING G AND  
REMARK 900 DAMP INSERTED OPPOSITE A TEMPLATING T AT THE PRIMER TERMINUS.        
REMARK 999                                                                      
REMARK 999 SEQUENCE                                                             
REMARK 999 AUTHORS STATE THAT THIS IS A DELETION-SUBSTITUTION MUTANT, WITH      
REMARK 999 RESIDUES SQEENGQQQ IN THE WILDTYPE SUBSTITUTED BY RESIDUES KGET.     
REMARK 999 HOWEVER, THE RESIDUE NUMBERING WAS KEPT CONSISTENT WITH THE WT       
REMARK 999 PROTEIN.                                                             
DBREF  4FO6 A  242   575  UNP    Q9UGP5   DPOLL_HUMAN    242    575             
DBREF  4FO6 T    1    11  PDB    4FO6     4FO6             1     11             
DBREF  4FO6 P    1     6  PDB    4FO6     4FO6             1      6             
DBREF  4FO6 D    1     4  PDB    4FO6     4FO6             1      4             
DBREF  4FO6 H    7    11  PDB    4FO6     4FO6             7     11             
DBREF  4FO6 I    1     5  PDB    4FO6     4FO6             1      5             
SEQADV 4FO6 LYS A  463  UNP  Q9UGP5    SER   463 SEE REMARK 999                 
SEQADV 4FO6 GLY A  464  UNP  Q9UGP5    GLN   464 SEE REMARK 999                 
SEQADV 4FO6 GLU A  470  UNP  Q9UGP5    GLN   470 SEE REMARK 999                 
SEQADV 4FO6 THR A  471  UNP  Q9UGP5    GLN   471 SEE REMARK 999                 
SEQADV 4FO6 ALA A  543  UNP  Q9UGP5    CYS   543 ENGINEERED MUTATION            
SEQRES   1 A  329  ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN LEU          
SEQRES   2 A  329  HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA TYR          
SEQRES   3 A  329  SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR ALA          
SEQRES   4 A  329  LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO VAL          
SEQRES   5 A  329  THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE GLY          
SEQRES   6 A  329  LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SER          
SEQRES   7 A  329  GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER VAL          
SEQRES   8 A  329  PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA GLY          
SEQRES   9 A  329  THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE ARG          
SEQRES  10 A  329  SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR THR          
SEQRES  11 A  329  GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE LEU          
SEQRES  12 A  329  GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU GLN          
SEQRES  13 A  329  THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY LEU          
SEQRES  14 A  329  LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS ALA          
SEQRES  15 A  329  THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO ASP          
SEQRES  16 A  329  GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU ASP          
SEQRES  17 A  329  SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU VAL          
SEQRES  18 A  329  LYS GLY GLU THR LYS TYR LEU GLY VAL CYS ARG LEU PRO          
SEQRES  19 A  329  GLY PRO GLY ARG ARG HIS ARG ARG LEU ASP ILE ILE VAL          
SEQRES  20 A  329  VAL PRO TYR SER GLU PHE ALA CYS ALA LEU LEU TYR PHE          
SEQRES  21 A  329  THR GLY SER ALA HIS PHE ASN ARG SER MET ARG ALA LEU          
SEQRES  22 A  329  ALA LYS THR LYS GLY MET SER LEU SER GLU HIS ALA LEU          
SEQRES  23 A  329  SER THR ALA VAL VAL ARG ASN THR HIS GLY ALA LYS VAL          
SEQRES  24 A  329  GLY PRO GLY ARG VAL LEU PRO THR PRO THR GLU LYS ASP          
SEQRES  25 A  329  VAL PHE ARG LEU LEU GLY LEU PRO TYR ARG GLU PRO ALA          
SEQRES  26 A  329  GLU ARG ASP TRP                                              
SEQRES   1 T   11   DC  DG  DG  DC  DT  DG  DT  DA  DC  DT  DG                  
SEQRES   1 P    6   DC  DA  DG  DT  DA   C                                      
SEQRES   1 D    4   DG  DC  DC  DG                                              
SEQRES   1 H    5   DT  DA  DC  DT  DG                                          
SEQRES   1 I    5   DC  DA  DG  DT  DA                                          
HET     MG  A 601       1                                                       
HET     NA  A 602       1                                                       
HET     CL  A 603       1                                                       
HET     MN  A 604       1                                                       
HET     NA  A 605       1                                                       
HET    F2A  A 606      30                                                       
HETNAM      MG MAGNESIUM ION                                                    
HETNAM      NA SODIUM ION                                                       
HETNAM      CL CHLORIDE ION                                                     
HETNAM      MN MANGANESE (II) ION                                               
HETNAM     F2A 2'-DEOXY-5'-O-[(S)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)            
HETNAM   2 F2A  PHOSPHORYL]METHYL}PHOSPHORYL]ADENOSINE                          
FORMUL   7   MG    MG 2+                                                        
FORMUL   8   NA    2(NA 1+)                                                     
FORMUL   9   CL    CL 1-                                                        
FORMUL  10   MN    MN 2+                                                        
FORMUL  12  F2A    C11 H18 N5 O11 P3                                            
FORMUL  13  HOH   *212(H2 O)                                                    
HELIX    1   1 ILE A  256  GLN A  270  1                                  15    
HELIX    2   2 ASP A  272  SER A  288  1                                  17    
HELIX    3   3 SER A  295  CYS A  300  1                                   6    
HELIX    4   4 GLY A  306  GLY A  320  1                                  15    
HELIX    5   5 LEU A  322  HIS A  327  1                                   6    
HELIX    6   6 SER A  331  ASN A  340  1                                  10    
HELIX    7   7 GLY A  345  GLN A  355  1                                  11    
HELIX    8   8 SER A  359  ALA A  367  1                                   9    
HELIX    9   9 THR A  370  HIS A  379  1                                  10    
HELIX   10  10 SER A  381  GLU A  385  5                                   5    
HELIX   11  11 ARG A  389  ALA A  405  1                                  17    
HELIX   12  12 CYS A  415  ARG A  420  1                                   6    
HELIX   13  13 ILE A  443  GLU A  454  1                                  12    
HELIX   14  14 GLU A  498  GLY A  508  1                                  11    
HELIX   15  15 SER A  509  LYS A  523  1                                  15    
HELIX   16  16 THR A  555  LEU A  563  1                                   9    
HELIX   17  17 GLU A  569  ASP A  574  5                                   6    
SHEET    1   A 2 MET A 387  PRO A 388  0                                        
SHEET    2   A 2 THR A 424  CYS A 425 -1  O  CYS A 425   N  MET A 387           
SHEET    1   B 5 LEU A 411  ALA A 414  0                                        
SHEET    2   B 5 VAL A 428  HIS A 434 -1  O  LEU A 431   N  VAL A 413           
SHEET    3   B 5 ARG A 487  PRO A 495  1  O  ASP A 490   N  VAL A 430           
SHEET    4   B 5 LYS A 472  CYS A 477 -1  N  CYS A 477   O  ARG A 487           
SHEET    5   B 5 LEU A 457  LYS A 463 -1  N  LEU A 461   O  LEU A 474           
SHEET    1   C 3 SER A 526  LEU A 527  0                                        
SHEET    2   C 3 LEU A 532  THR A 534 -1  O  SER A 533   N  SER A 526           
SHEET    3   C 3 ARG A 549  VAL A 550 -1  O  ARG A 549   N  THR A 534           
SHEET    1   D 2 VAL A 537  ARG A 538  0                                        
SHEET    2   D 2 LYS A 544  GLY A 546 -1  O  VAL A 545   N  VAL A 537           
LINK         O   CYS A 300                NA    NA A 602     1555   1555  2.94  
LINK         O   ILE A 302                NA    NA A 602     1555   1555  2.40  
LINK         O   ILE A 305                NA    NA A 602     1555   1555  2.84  
LINK         O   SER A 339                NA    NA A 605     1555   1555  2.39  
LINK         O   ILE A 341                NA    NA A 605     1555   1555  2.41  
LINK         O   ALA A 344                NA    NA A 605     1555   1555  2.36  
LINK         OD1 ASP A 427                MG    MG A 601     1555   1555  1.99  
LINK         OD2 ASP A 427                MN    MN A 604     1555   1555  2.03  
LINK         OD1 ASP A 429                MG    MG A 601     1555   1555  1.96  
LINK         OD2 ASP A 429                MN    MN A 604     1555   1555  2.15  
LINK         OD2 ASP A 490                MN    MN A 604     1555   1555  2.16  
LINK        MG    MG A 601                 O2B F2A A 606     1555   1555  2.05  
LINK        MG    MG A 601                 O1A F2A A 606     1555   1555  2.14  
LINK        MG    MG A 601                 O3G F2A A 606     1555   1555  2.19  
LINK        MG    MG A 601                 O   HOH A 701     1555   1555  2.08  
LINK        NA    NA A 602                 OP1  DC D   3     1555   1555  3.17  
LINK        MN    MN A 604                 O1A F2A A 606     1555   1555  2.29  
LINK        MN    MN A 604                 O   HOH A 823     1555   1555  2.21  
LINK        MN    MN A 604                 O3'   C P   6     1555   1555  2.19  
LINK        NA    NA A 605                 O   HOH A 704     1555   1555  2.42  
LINK        NA    NA A 605                 O   HOH A 728     1555   1555  2.43  
LINK        NA    NA A 605                 OP1  DA P   5     1555   1555  2.49  
CISPEP   1 GLY A  508    SER A  509          0         7.79                     
SITE     1 AC1  5 ASP A 427  ASP A 429   MN A 604  F2A A 606                    
SITE     2 AC1  5 HOH A 701                                                     
SITE     1 AC2  4 CYS A 300  ILE A 302  ILE A 305   DC D   3                    
SITE     1 AC3  3 ARG A 517  GLU A 529   DG T   6                               
SITE     1 AC4  7 ASP A 427  ASP A 429  ASP A 490   MG A 601                    
SITE     2 AC4  7 F2A A 606  HOH A 823    C P   6                               
SITE     1 AC5  6 SER A 339  ILE A 341  ALA A 344  HOH A 704                    
SITE     2 AC5  6 HOH A 728   DA P   5                                          
SITE     1 AC6 25 ARG A 386  GLY A 416  SER A 417  ARG A 420                    
SITE     2 AC6 25 CYS A 425  GLY A 426  ASP A 427  ASP A 429                    
SITE     3 AC6 25 TYR A 505  PHE A 506  THR A 507  GLY A 508                    
SITE     4 AC6 25 ALA A 510  ASN A 513   MG A 601   MN A 604                    
SITE     5 AC6 25 HOH A 701  HOH A 703  HOH A 735  HOH A 737                    
SITE     6 AC6 25 HOH A 782  HOH A 823    C P   6   DT T   5                    
SITE     7 AC6 25  DG T   6                                                     
CRYST1   55.780   63.655  141.470  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.017928  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.015710  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.007069        0.00000