HEADER PROTEIN BINDING 20-JUN-12 4FOK TITLE 1.8 A CRYSTAL STRUCTURE OF THE FIMX EAL DOMAIN IN COMPLEX WITH C-DIGMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIMX; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EAL DOMAIN (UNP RESIDUES 426-689); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS AXONOPODIS PV. CITRI; SOURCE 3 ORGANISM_TAXID: 190486; SOURCE 4 STRAIN: 306; SOURCE 5 GENE: XAC2398; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS TIM LIKE BARREL, BETA-(BETA/ALPHA)6-BETA, C-DI-GMP BINDING, TYPE IV KEYWDS 2 PILUS ASSEMBLY, PILZ, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.S.FARAH,C.R.GUZZO REVDAT 4 28-FEB-24 4FOK 1 REMARK HETSYN REVDAT 3 12-JUN-13 4FOK 1 JRNL REVDAT 2 03-APR-13 4FOK 1 JRNL REVDAT 1 27-MAR-13 4FOK 0 JRNL AUTH C.R.GUZZO,G.DUNGER,R.K.SALINAS,C.S.FARAH JRNL TITL STRUCTURE OF THE PILZ-FIMXEAL-C-DI-GMP COMPLEX RESPONSIBLE JRNL TITL 2 FOR THE REGULATION OF BACTERIAL TYPE IV PILUS BIOGENESIS. JRNL REF J.MOL.BIOL. V. 425 2174 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23507310 JRNL DOI 10.1016/J.JMB.2013.03.021 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 23469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1258 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1679 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2085 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.251 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2428 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1686 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3326 ; 1.548 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4102 ; 0.932 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 313 ; 5.577 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;35.210 ;23.443 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 410 ;13.755 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.539 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 356 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2749 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 524 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1421 ; 0.829 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 570 ; 0.247 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2314 ; 1.492 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1007 ; 2.410 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 992 ; 3.808 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4FOK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000073158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.437 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24851 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.67000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6 M AMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CITRATE, PH 4.7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.83800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.75750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.83800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.75750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 561 CD GLU A 561 OE2 -0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 575 48.72 -141.83 REMARK 500 ASP A 590 10.28 81.54 REMARK 500 ALA A 678 137.87 -179.36 REMARK 500 MET A 684 77.90 -101.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 709 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CNR RELATED DB: PDB REMARK 900 XANTHOMONAS AXONOPODIS PV CITRI PILZ (XAC1133) REMARK 900 RELATED ID: 4FOJ RELATED DB: PDB REMARK 900 1.55 A CRYSTAL STRUCTURE OF XANTHOMONAS CITRI FIMX EAL DOMAIN IN REMARK 900 COMPLEX WITH C-DIGMP REMARK 900 RELATED ID: 4FOU RELATED DB: PDB REMARK 900 2.1 A CRYSTAL STRUCTURE OF PILZ-FIMX(EAL DOMAIN) IN COMPLEX WITH C- REMARK 900 DIGMP DBREF 4FOK A 426 689 UNP Q8PJX9 Q8PJX9_XANAC 426 689 SEQRES 1 A 264 VAL SER ILE TYR ASP PRO ALA ALA ALA ASP ARG ALA GLU SEQRES 2 A 264 GLU GLU ARG ILE GLU ARG TRP VAL GLU GLN LEU ARG GLU SEQRES 3 A 264 ALA LEU VAL GLY ASP GLY PHE LEU LEU HIS TYR GLN PRO SEQRES 4 A 264 VAL LEU ASN LEU GLN GLY GLU PRO LEU GLU LEU TYR GLN SEQRES 5 A 264 ALA PHE LEU ARG LEU GLU ARG ASN GLY GLU MET MET SER SEQRES 6 A 264 PRO ASN ALA PHE MET ALA ILE ALA GLU GLU HIS ASP LEU SEQRES 7 A 264 VAL THR GLU ILE ASP ARG TRP VAL VAL ALA ARG ALA ILE SEQRES 8 A 264 ARG GLN LEU GLY GLU ARG GLN ARG ALA GLY HIS LYS THR SEQRES 9 A 264 HIS LEU LEU VAL ARG ILE GLY PRO ASN SER PHE SER ASP SEQRES 10 A 264 PRO GLN MET ILE ASP THR ILE ARG GLU GLN LEU ALA VAL SEQRES 11 A 264 TYR GLY VAL PRO GLY GLU ARG LEU TRP LEU GLN THR PRO SEQRES 12 A 264 GLU SER LYS VAL PHE THR HIS LEU ARG ASN ALA GLN GLN SEQRES 13 A 264 PHE LEU ALA ALA VAL SER ALA MET ASP CYS LYS VAL GLY SEQRES 14 A 264 LEU GLU GLN PHE GLY SER GLY LEU ASP SER PHE GLN LEU SEQRES 15 A 264 LEU ALA HIS PHE HIS PRO ALA PHE LEU LYS LEU ASP ARG SEQRES 16 A 264 GLY ILE THR GLY ASP ILE ALA SER ALA ARG ASP SER GLN SEQRES 17 A 264 GLU LYS ILE ARG GLU ILE THR SER ARG ALA GLN PRO ALA SEQRES 18 A 264 GLY ILE LEU THR MET ALA GLU PHE VAL ALA ASP ALA GLN SEQRES 19 A 264 SER MET SER SER PHE PHE SER ALA GLY VAL ASP TYR VAL SEQRES 20 A 264 GLN GLY ASP PHE VAL ALA PRO THR GLY PRO LEU MET ASN SEQRES 21 A 264 TYR GLU PHE GLY HET C2E A 701 46 HET GOL A 702 6 HET GOL A 703 6 HET GOL A 704 6 HET GOL A 705 6 HET GOL A 706 6 HET GOL A 707 6 HET GOL A 708 6 HET GOL A 709 6 HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETNAM GOL GLYCEROL HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 C2E C20 H24 N10 O14 P2 FORMUL 3 GOL 8(C3 H8 O3) FORMUL 11 HOH *203(H2 O) HELIX 1 1 ASP A 430 GLY A 455 1 26 HELIX 2 2 SER A 490 HIS A 501 1 12 HELIX 3 3 LEU A 503 ALA A 525 1 23 HELIX 4 4 GLY A 536 PHE A 540 5 5 HELIX 5 5 ASP A 542 GLY A 557 1 16 HELIX 6 6 PRO A 559 GLU A 561 5 3 HELIX 7 7 GLU A 569 THR A 574 1 6 HELIX 8 8 HIS A 575 ALA A 588 1 14 HELIX 9 9 GLY A 601 ALA A 609 1 9 HELIX 10 10 ASP A 619 GLY A 624 1 6 HELIX 11 11 ALA A 629 GLY A 647 1 19 HELIX 12 12 ASP A 657 ALA A 667 1 11 SHEET 1 A 9 PHE A 458 PRO A 464 0 SHEET 2 A 9 LEU A 475 ARG A 484 -1 O GLN A 477 N GLN A 463 SHEET 3 A 9 HIS A 530 ARG A 534 1 O LEU A 532 N ALA A 478 SHEET 4 A 9 LEU A 563 PRO A 568 1 O TRP A 564 N LEU A 531 SHEET 5 A 9 LYS A 592 PHE A 598 1 O LYS A 592 N LEU A 565 SHEET 6 A 9 PHE A 615 LEU A 618 1 O LYS A 617 N LEU A 595 SHEET 7 A 9 LEU A 649 ALA A 652 1 O MET A 651 N LEU A 618 SHEET 8 A 9 TYR A 671 VAL A 672 1 O TYR A 671 N ALA A 652 SHEET 9 A 9 LEU A 466 ASN A 467 -1 N LEU A 466 O VAL A 672 SHEET 1 B 3 PHE A 458 PRO A 464 0 SHEET 2 B 3 LEU A 475 ARG A 484 -1 O GLN A 477 N GLN A 463 SHEET 3 B 3 GLU A 487 MET A 489 -1 O MET A 489 N LEU A 482 SITE 1 AC1 29 GLN A 463 PHE A 479 LEU A 480 ARG A 481 SITE 2 AC1 29 SER A 490 PRO A 491 ASN A 492 MET A 495 SITE 3 AC1 29 ASP A 508 ARG A 534 ARG A 550 GLU A 551 SITE 4 AC1 29 ALA A 554 GLU A 653 PHE A 654 GLN A 673 SITE 5 AC1 29 GLY A 674 ASP A 675 GOL A 702 GOL A 703 SITE 6 AC1 29 GOL A 705 GOL A 707 HOH A 805 HOH A 806 SITE 7 AC1 29 HOH A 813 HOH A 844 HOH A 894 HOH A 900 SITE 8 AC1 29 HOH A 942 SITE 1 AC2 10 GLU A 551 ARG A 620 PHE A 654 VAL A 655 SITE 2 AC2 10 ALA A 656 GLY A 674 ASP A 675 C2E A 701 SITE 3 AC2 10 HOH A 944 HOH A 953 SITE 1 AC3 8 ARG A 534 GLU A 596 GLN A 597 C2E A 701 SITE 2 AC3 8 HOH A 832 HOH A 894 HOH A 942 HOH A 963 SITE 1 AC4 6 GLU A 483 GLU A 634 ARG A 637 GLU A 638 SITE 2 AC4 6 SER A 641 HOH A 846 SITE 1 AC5 7 ARG A 481 MET A 488 SER A 490 ARG A 550 SITE 2 AC5 7 C2E A 701 GOL A 709 HOH A 887 SITE 1 AC6 3 LYS A 571 THR A 574 HIS A 575 SITE 1 AC7 8 PRO A 491 ASN A 492 MET A 495 GLU A 499 SITE 2 AC7 8 ALA A 554 GLY A 557 C2E A 701 GOL A 708 SITE 1 AC8 10 PRO A 491 ASN A 492 MET A 495 ALA A 496 SITE 2 AC8 10 LEU A 553 GLY A 557 VAL A 558 PRO A 559 SITE 3 AC8 10 GOL A 707 HOH A 988 SITE 1 AC9 4 HIS A 461 ARG A 481 THR A 680 GOL A 705 CRYST1 65.676 85.515 46.323 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015226 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011694 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021588 0.00000