HEADER MOTOR PROTEIN 24-JUN-12 4FQ0 TITLE CRYSTAL STRUCTURE OF FLIG-FLIM COMPLEX FROM H. PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAGELLAR MOTOR SWITCH PROTEIN; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: UNP RESIDUES 33-237; COMPND 5 SYNONYM: FLIM; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FLAGELLAR MOTOR SWITCH PROTEIN; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 116-205; COMPND 11 SYNONYM: FLIG; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: 26695; SOURCE 5 GENE: FLIM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-2; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 13 ORGANISM_TAXID: 85962; SOURCE 14 STRAIN: 26695; SOURCE 15 GENE: FLIG; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PAC28M KEYWDS FLAGELLAR MOTOR SWITCH COMPLEX, FLIG-FLIM-FLIN, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.H.LAM,S.W.N.AU REVDAT 3 20-MAR-24 4FQ0 1 SEQADV REVDAT 2 03-JUL-13 4FQ0 1 JRNL REVDAT 1 08-MAY-13 4FQ0 0 JRNL AUTH K.H.LAM,W.W.L.LAM,J.Y.WONG,L.C.CHAN,M.KOTAKA,T.K.W.LING, JRNL AUTH 2 D.Y.JIN,K.M.OTTEMANN,S.W.N.AU JRNL TITL STRUCTURAL BASIS OF FLIG-FLIM INTERACTION IN HELICOBACTER JRNL TITL 2 PYLORI JRNL REF MOL.MICROBIOL. V. 88 798 2013 JRNL REFN ISSN 0950-382X JRNL PMID 23614777 JRNL DOI 10.1111/MMI.12222 REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 15973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 862 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 815 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.5460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3965 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.04000 REMARK 3 B22 (A**2) : -6.58000 REMARK 3 B33 (A**2) : 8.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 4.948 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.446 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.408 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 47.165 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4031 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5471 ; 1.641 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 518 ; 6.476 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;37.985 ;25.346 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 702 ;20.340 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.364 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 657 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2960 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 B 51 227 A 51 227 209 0.22 0.05 REMARK 3 2 C 117 196 D 117 196 88 0.30 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 48 B 121 REMARK 3 RESIDUE RANGE : B 122 B 169 REMARK 3 RESIDUE RANGE : B 170 B 229 REMARK 3 ORIGIN FOR THE GROUP (A): -2.7319 13.3542 -31.5139 REMARK 3 T TENSOR REMARK 3 T11: 0.2655 T22: 0.2971 REMARK 3 T33: 0.2539 T12: 0.0171 REMARK 3 T13: 0.0155 T23: -0.0988 REMARK 3 L TENSOR REMARK 3 L11: 0.6455 L22: 2.8290 REMARK 3 L33: 5.6003 L12: 0.2546 REMARK 3 L13: -0.6549 L23: -0.8101 REMARK 3 S TENSOR REMARK 3 S11: 0.0771 S12: 0.0039 S13: 0.1072 REMARK 3 S21: 0.3567 S22: -0.1944 S23: 0.4102 REMARK 3 S31: -0.0368 S32: -0.1711 S33: 0.1173 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 102 REMARK 3 RESIDUE RANGE : A 103 A 147 REMARK 3 RESIDUE RANGE : A 148 A 169 REMARK 3 RESIDUE RANGE : A 170 A 207 REMARK 3 RESIDUE RANGE : A 208 A 228 REMARK 3 ORIGIN FOR THE GROUP (A): -2.6474 -13.5816 -35.4383 REMARK 3 T TENSOR REMARK 3 T11: 0.2684 T22: 0.2830 REMARK 3 T33: 0.3658 T12: -0.0074 REMARK 3 T13: -0.0511 T23: -0.1229 REMARK 3 L TENSOR REMARK 3 L11: 0.5504 L22: 3.1996 REMARK 3 L33: 5.2016 L12: -0.2032 REMARK 3 L13: 0.5451 L23: -0.4855 REMARK 3 S TENSOR REMARK 3 S11: 0.0743 S12: 0.0074 S13: -0.0377 REMARK 3 S21: -0.4047 S22: -0.2217 S23: 0.5138 REMARK 3 S31: 0.0109 S32: -0.2593 S33: 0.1474 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 117 C 145 REMARK 3 RESIDUE RANGE : C 146 C 180 REMARK 3 RESIDUE RANGE : C 181 C 196 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9573 16.2603 -57.0530 REMARK 3 T TENSOR REMARK 3 T11: 0.1728 T22: 0.3262 REMARK 3 T33: 0.1735 T12: 0.0702 REMARK 3 T13: -0.0668 T23: -0.0933 REMARK 3 L TENSOR REMARK 3 L11: 4.6288 L22: 3.6206 REMARK 3 L33: 7.3802 L12: 3.2610 REMARK 3 L13: -1.3382 L23: -0.3067 REMARK 3 S TENSOR REMARK 3 S11: -0.1252 S12: -0.1263 S13: 0.4090 REMARK 3 S21: -0.0042 S22: 0.2170 S23: -0.1126 REMARK 3 S31: 0.2854 S32: 0.5919 S33: -0.0918 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 117 D 138 REMARK 3 RESIDUE RANGE : D 139 D 180 REMARK 3 RESIDUE RANGE : D 181 D 196 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0722 -16.3627 -10.0825 REMARK 3 T TENSOR REMARK 3 T11: 0.1771 T22: 0.3090 REMARK 3 T33: 0.0338 T12: -0.0427 REMARK 3 T13: 0.0705 T23: -0.0447 REMARK 3 L TENSOR REMARK 3 L11: 5.2229 L22: 5.7084 REMARK 3 L33: 8.9335 L12: -2.7612 REMARK 3 L13: 2.5209 L23: 0.7305 REMARK 3 S TENSOR REMARK 3 S11: -0.0758 S12: 0.0465 S13: -0.0632 REMARK 3 S21: -0.1264 S22: 0.1373 S23: 0.0667 REMARK 3 S31: -0.1395 S32: 0.5631 S33: -0.0616 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4FQ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000073210. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15973 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULFATE, 0.2M LITHIUM REMARK 280 SULFATE, 0.1M CAPSO, 3%(V/V) METHANOL, PH 10.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.04250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.86950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.27000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.86950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.04250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.27000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 28 REMARK 465 PRO B 29 REMARK 465 LEU B 30 REMARK 465 GLY B 31 REMARK 465 SER B 32 REMARK 465 PRO B 33 REMARK 465 GLN B 34 REMARK 465 ARG B 35 REMARK 465 SER B 36 REMARK 465 VAL B 37 REMARK 465 THR B 38 REMARK 465 LEU B 39 REMARK 465 TYR B 40 REMARK 465 ASP B 41 REMARK 465 PHE B 42 REMARK 465 LYS B 43 REMARK 465 ARG B 44 REMARK 465 PRO B 45 REMARK 465 ASN B 46 REMARK 465 ARG B 47 REMARK 465 MET B 230 REMARK 465 GLY B 231 REMARK 465 SER B 232 REMARK 465 ARG B 233 REMARK 465 ASP B 234 REMARK 465 LEU B 235 REMARK 465 MET B 236 REMARK 465 LEU B 237 REMARK 465 GLY A 28 REMARK 465 PRO A 29 REMARK 465 LEU A 30 REMARK 465 GLY A 31 REMARK 465 SER A 32 REMARK 465 PRO A 33 REMARK 465 GLN A 34 REMARK 465 ARG A 35 REMARK 465 SER A 36 REMARK 465 VAL A 37 REMARK 465 THR A 38 REMARK 465 LEU A 39 REMARK 465 TYR A 40 REMARK 465 ASP A 41 REMARK 465 PHE A 42 REMARK 465 LYS A 43 REMARK 465 ARG A 44 REMARK 465 PRO A 45 REMARK 465 ASN A 46 REMARK 465 ARG A 47 REMARK 465 VAL A 48 REMARK 465 LYS A 229 REMARK 465 MET A 230 REMARK 465 GLY A 231 REMARK 465 SER A 232 REMARK 465 ARG A 233 REMARK 465 ASP A 234 REMARK 465 LEU A 235 REMARK 465 MET A 236 REMARK 465 LEU A 237 REMARK 465 HIS C 95 REMARK 465 HIS C 96 REMARK 465 HIS C 97 REMARK 465 HIS C 98 REMARK 465 HIS C 99 REMARK 465 HIS C 100 REMARK 465 HIS C 101 REMARK 465 MET C 102 REMARK 465 ALA C 103 REMARK 465 SER C 104 REMARK 465 MET C 105 REMARK 465 THR C 106 REMARK 465 GLY C 107 REMARK 465 GLY C 108 REMARK 465 GLN C 109 REMARK 465 GLN C 110 REMARK 465 MET C 111 REMARK 465 GLY C 112 REMARK 465 ARG C 113 REMARK 465 GLY C 114 REMARK 465 SER C 115 REMARK 465 GLN C 116 REMARK 465 SER C 197 REMARK 465 LEU C 198 REMARK 465 THR C 199 REMARK 465 SER C 200 REMARK 465 TYR C 201 REMARK 465 LYS C 202 REMARK 465 ILE C 203 REMARK 465 GLU C 204 REMARK 465 VAL C 205 REMARK 465 HIS D 95 REMARK 465 HIS D 96 REMARK 465 HIS D 97 REMARK 465 HIS D 98 REMARK 465 HIS D 99 REMARK 465 HIS D 100 REMARK 465 HIS D 101 REMARK 465 MET D 102 REMARK 465 ALA D 103 REMARK 465 SER D 104 REMARK 465 MET D 105 REMARK 465 THR D 106 REMARK 465 GLY D 107 REMARK 465 GLY D 108 REMARK 465 GLN D 109 REMARK 465 GLN D 110 REMARK 465 MET D 111 REMARK 465 GLY D 112 REMARK 465 ARG D 113 REMARK 465 GLY D 114 REMARK 465 SER D 115 REMARK 465 GLN D 116 REMARK 465 SER D 197 REMARK 465 LEU D 198 REMARK 465 THR D 199 REMARK 465 SER D 200 REMARK 465 TYR D 201 REMARK 465 LYS D 202 REMARK 465 ILE D 203 REMARK 465 GLU D 204 REMARK 465 VAL D 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 ARG B 54 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 57 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 MET B 112 CG SD CE REMARK 470 LYS B 136 CG CD CE NZ REMARK 470 GLU B 145 CG CD OE1 OE2 REMARK 470 ARG B 159 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 189 CG1 CG2 REMARK 470 LYS B 229 CG CD CE NZ REMARK 470 SER A 49 OG REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 ARG A 54 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 MET A 112 CG SD CE REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 VAL A 189 CG1 CG2 REMARK 470 LYS C 117 CG CD CE NZ REMARK 470 LYS C 124 CG CD CE NZ REMARK 470 LYS C 126 CG CD CE NZ REMARK 470 GLN C 129 CG CD OE1 NE2 REMARK 470 GLU C 178 CG CD OE1 OE2 REMARK 470 GLN C 182 CG CD OE1 NE2 REMARK 470 LYS D 117 CG CD CE NZ REMARK 470 LYS D 124 CG CD CE NZ REMARK 470 LYS D 126 CG CD CE NZ REMARK 470 GLN D 129 CG CD OE1 NE2 REMARK 470 GLU D 178 CG CD OE1 OE2 REMARK 470 GLN D 182 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET B 96 17.34 -65.78 REMARK 500 LYS A 50 -90.33 -107.97 REMARK 500 MET A 96 5.72 -63.95 REMARK 500 LYS A 136 -154.23 -89.76 REMARK 500 VAL A 172 -67.54 -97.98 REMARK 500 ILE A 223 17.54 -142.04 REMARK 500 SER C 159 -6.44 -54.82 REMARK 500 LEU C 195 35.52 -93.11 REMARK 500 LYS D 124 17.30 -68.09 REMARK 500 ASN D 136 36.74 -95.79 REMARK 500 GLN D 182 -15.50 -46.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3USW RELATED DB: PDB REMARK 900 FLIG STRUCTURE FROM H. PYLORI REMARK 900 RELATED ID: 3USY RELATED DB: PDB REMARK 900 FLIG STRUCTURE FROM H. PYLORI DBREF 4FQ0 B 33 237 UNP O25675 O25675_HELPY 33 237 DBREF 4FQ0 A 33 237 UNP O25675 O25675_HELPY 33 237 DBREF 4FQ0 C 116 205 UNP O25119 O25119_HELPY 116 205 DBREF 4FQ0 D 116 205 UNP O25119 O25119_HELPY 116 205 SEQADV 4FQ0 GLY B 28 UNP O25675 EXPRESSION TAG SEQADV 4FQ0 PRO B 29 UNP O25675 EXPRESSION TAG SEQADV 4FQ0 LEU B 30 UNP O25675 EXPRESSION TAG SEQADV 4FQ0 GLY B 31 UNP O25675 EXPRESSION TAG SEQADV 4FQ0 SER B 32 UNP O25675 EXPRESSION TAG SEQADV 4FQ0 GLY A 28 UNP O25675 EXPRESSION TAG SEQADV 4FQ0 PRO A 29 UNP O25675 EXPRESSION TAG SEQADV 4FQ0 LEU A 30 UNP O25675 EXPRESSION TAG SEQADV 4FQ0 GLY A 31 UNP O25675 EXPRESSION TAG SEQADV 4FQ0 SER A 32 UNP O25675 EXPRESSION TAG SEQADV 4FQ0 HIS C 95 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 HIS C 96 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 HIS C 97 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 HIS C 98 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 HIS C 99 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 HIS C 100 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 HIS C 101 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 MET C 102 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 ALA C 103 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 SER C 104 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 MET C 105 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 THR C 106 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 GLY C 107 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 GLY C 108 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 GLN C 109 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 GLN C 110 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 MET C 111 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 GLY C 112 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 ARG C 113 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 GLY C 114 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 SER C 115 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 HIS D 95 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 HIS D 96 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 HIS D 97 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 HIS D 98 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 HIS D 99 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 HIS D 100 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 HIS D 101 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 MET D 102 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 ALA D 103 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 SER D 104 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 MET D 105 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 THR D 106 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 GLY D 107 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 GLY D 108 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 GLN D 109 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 GLN D 110 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 MET D 111 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 GLY D 112 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 ARG D 113 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 GLY D 114 UNP O25119 EXPRESSION TAG SEQADV 4FQ0 SER D 115 UNP O25119 EXPRESSION TAG SEQRES 1 B 210 GLY PRO LEU GLY SER PRO GLN ARG SER VAL THR LEU TYR SEQRES 2 B 210 ASP PHE LYS ARG PRO ASN ARG VAL SER LYS GLU GLN LEU SEQRES 3 B 210 ARG SER PHE ARG SER ILE HIS ASP LYS MET ALA ARG ASN SEQRES 4 B 210 LEU SER SER GLN VAL SER SER ILE MET ARG SER ILE VAL SEQRES 5 B 210 GLU ILE GLN LEU HIS SER VAL ASP GLN MET THR TYR GLY SEQRES 6 B 210 GLU PHE LEU MET SER LEU PRO SER PRO THR SER PHE ASN SEQRES 7 B 210 VAL PHE SER MET LYS PRO MET GLY GLY THR GLY VAL LEU SEQRES 8 B 210 GLU ILE ASN PRO SER ILE ALA PHE PRO MET ILE ASP ARG SEQRES 9 B 210 LEU LEU GLY GLY LYS GLY SER ALA TYR ASP GLN ASN ARG SEQRES 10 B 210 GLU PHE SER ASP ILE GLU LEU ASN LEU LEU ASP THR ILE SEQRES 11 B 210 LEU ARG GLN VAL MET GLN ILE LEU LYS GLU VAL TRP SER SEQRES 12 B 210 PRO VAL VAL GLU MET PHE PRO THR ILE ASP ALA LYS GLU SEQRES 13 B 210 SER SER ALA ASN VAL VAL GLN ILE VAL ALA GLN ASN GLU SEQRES 14 B 210 ILE SER ILE MET VAL VAL LEU GLU ILE ILE ILE GLY HIS SEQRES 15 B 210 SER ARG GLY MET MET ASN ILE CYS TYR PRO VAL ILE SER SEQRES 16 B 210 ILE GLU SER ILE LEU SER LYS MET GLY SER ARG ASP LEU SEQRES 17 B 210 MET LEU SEQRES 1 A 210 GLY PRO LEU GLY SER PRO GLN ARG SER VAL THR LEU TYR SEQRES 2 A 210 ASP PHE LYS ARG PRO ASN ARG VAL SER LYS GLU GLN LEU SEQRES 3 A 210 ARG SER PHE ARG SER ILE HIS ASP LYS MET ALA ARG ASN SEQRES 4 A 210 LEU SER SER GLN VAL SER SER ILE MET ARG SER ILE VAL SEQRES 5 A 210 GLU ILE GLN LEU HIS SER VAL ASP GLN MET THR TYR GLY SEQRES 6 A 210 GLU PHE LEU MET SER LEU PRO SER PRO THR SER PHE ASN SEQRES 7 A 210 VAL PHE SER MET LYS PRO MET GLY GLY THR GLY VAL LEU SEQRES 8 A 210 GLU ILE ASN PRO SER ILE ALA PHE PRO MET ILE ASP ARG SEQRES 9 A 210 LEU LEU GLY GLY LYS GLY SER ALA TYR ASP GLN ASN ARG SEQRES 10 A 210 GLU PHE SER ASP ILE GLU LEU ASN LEU LEU ASP THR ILE SEQRES 11 A 210 LEU ARG GLN VAL MET GLN ILE LEU LYS GLU VAL TRP SER SEQRES 12 A 210 PRO VAL VAL GLU MET PHE PRO THR ILE ASP ALA LYS GLU SEQRES 13 A 210 SER SER ALA ASN VAL VAL GLN ILE VAL ALA GLN ASN GLU SEQRES 14 A 210 ILE SER ILE MET VAL VAL LEU GLU ILE ILE ILE GLY HIS SEQRES 15 A 210 SER ARG GLY MET MET ASN ILE CYS TYR PRO VAL ILE SER SEQRES 16 A 210 ILE GLU SER ILE LEU SER LYS MET GLY SER ARG ASP LEU SEQRES 17 A 210 MET LEU SEQRES 1 C 111 HIS HIS HIS HIS HIS HIS HIS MET ALA SER MET THR GLY SEQRES 2 C 111 GLY GLN GLN MET GLY ARG GLY SER GLN LYS ASN PHE ALA SEQRES 3 C 111 TYR LEU GLY LYS ILE LYS PRO GLN GLN LEU ALA ASP PHE SEQRES 4 C 111 ILE ILE ASN GLU HIS PRO GLN THR ILE ALA LEU ILE LEU SEQRES 5 C 111 ALA HIS MET GLU ALA PRO ASN ALA ALA GLU THR LEU SER SEQRES 6 C 111 TYR PHE PRO ASP GLU MET LYS ALA GLU ILE SER ILE ARG SEQRES 7 C 111 MET ALA ASN LEU GLY GLU ILE SER PRO GLN VAL VAL LYS SEQRES 8 C 111 ARG VAL SER THR VAL LEU GLU ASN LYS LEU GLU SER LEU SEQRES 9 C 111 THR SER TYR LYS ILE GLU VAL SEQRES 1 D 111 HIS HIS HIS HIS HIS HIS HIS MET ALA SER MET THR GLY SEQRES 2 D 111 GLY GLN GLN MET GLY ARG GLY SER GLN LYS ASN PHE ALA SEQRES 3 D 111 TYR LEU GLY LYS ILE LYS PRO GLN GLN LEU ALA ASP PHE SEQRES 4 D 111 ILE ILE ASN GLU HIS PRO GLN THR ILE ALA LEU ILE LEU SEQRES 5 D 111 ALA HIS MET GLU ALA PRO ASN ALA ALA GLU THR LEU SER SEQRES 6 D 111 TYR PHE PRO ASP GLU MET LYS ALA GLU ILE SER ILE ARG SEQRES 7 D 111 MET ALA ASN LEU GLY GLU ILE SER PRO GLN VAL VAL LYS SEQRES 8 D 111 ARG VAL SER THR VAL LEU GLU ASN LYS LEU GLU SER LEU SEQRES 9 D 111 THR SER TYR LYS ILE GLU VAL FORMUL 5 HOH *9(H2 O) HELIX 1 1 SER B 49 ARG B 76 1 28 HELIX 2 2 TYR B 91 MET B 96 1 6 HELIX 3 3 ASN B 121 LEU B 133 1 13 HELIX 4 4 SER B 147 SER B 170 1 24 HELIX 5 5 VAL B 220 SER B 228 1 9 HELIX 6 6 GLU A 51 MET A 75 1 25 HELIX 7 7 TYR A 91 MET A 96 1 6 HELIX 8 8 ASN A 121 LEU A 133 1 13 HELIX 9 9 SER A 147 SER A 170 1 24 HELIX 10 10 VAL A 220 SER A 228 1 9 HELIX 11 11 ALA C 120 ILE C 125 5 6 HELIX 12 12 LYS C 126 ILE C 135 1 10 HELIX 13 13 HIS C 138 HIS C 148 1 11 HELIX 14 14 GLU C 150 SER C 159 1 10 HELIX 15 15 PRO C 162 ASN C 175 1 14 HELIX 16 16 SER C 180 LEU C 195 1 16 HELIX 17 17 LYS D 126 ILE D 135 1 10 HELIX 18 18 HIS D 138 HIS D 148 1 11 HELIX 19 19 GLU D 150 LEU D 158 1 9 HELIX 20 20 SER D 159 PHE D 161 5 3 HELIX 21 21 PRO D 162 ASN D 175 1 14 HELIX 22 22 SER D 180 ASN D 193 1 14 SHEET 1 A 6 VAL B 79 THR B 90 0 SHEET 2 A 6 ILE B 197 ILE B 207 -1 O SER B 198 N MET B 89 SHEET 3 A 6 SER B 210 PRO B 219 -1 O MET B 214 N LEU B 203 SHEET 4 A 6 GLY B 113 ILE B 120 -1 N GLU B 119 O ASN B 215 SHEET 5 A 6 SER B 103 LYS B 110 -1 N ASN B 105 O LEU B 118 SHEET 6 A 6 PHE B 176 GLU B 183 -1 O ASP B 180 N VAL B 106 SHEET 1 B 6 VAL A 79 THR A 90 0 SHEET 2 B 6 ILE A 197 ILE A 207 -1 O ILE A 206 N GLU A 80 SHEET 3 B 6 MET A 213 PRO A 219 -1 O TYR A 218 N ILE A 199 SHEET 4 B 6 GLY A 113 ILE A 120 -1 N GLU A 119 O ASN A 215 SHEET 5 B 6 SER A 103 MET A 109 -1 N ASN A 105 O LEU A 118 SHEET 6 B 6 THR A 178 GLU A 183 -1 O ASP A 180 N VAL A 106 CISPEP 1 SER B 100 PRO B 101 0 7.79 CISPEP 2 LYS B 110 PRO B 111 0 -6.98 CISPEP 3 SER A 100 PRO A 101 0 0.15 CISPEP 4 LYS A 110 PRO A 111 0 -0.07 CRYST1 40.085 124.540 137.739 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024947 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008030 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007260 0.00000