HEADER IMMUNE SYSTEM 25-JUN-12 4FQC TITLE CRYSTAL STRUCTURE OF PGT121 FAB BOUND TO A COMPLEX-TYPE SIALYLATED N- TITLE 2 GLYCAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293-6E; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM_CELL_LINE: HEK293-6E; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS IG FOLD, ANTI HIV, ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR L.SCHARF,P.J.BJORKMAN REVDAT 5 19-MAY-21 4FQC 1 SOURCE HETSYN REVDAT 4 29-JUL-20 4FQC 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 12-DEC-12 4FQC 1 JRNL REVDAT 2 21-NOV-12 4FQC 1 CAVEAT REMARK REVDAT 1 14-NOV-12 4FQC 0 JRNL AUTH H.MOUQUET,L.SCHARF,Z.EULER,Y.LIU,C.EDEN,J.F.SCHEID, JRNL AUTH 2 A.HALPER-STROMBERG,P.N.GNANAPRAGASAM,D.I.SPENCER,M.S.SEAMAN, JRNL AUTH 3 H.SCHUITEMAKER,T.FEIZI,M.C.NUSSENZWEIG,P.J.BJORKMAN JRNL TITL COMPLEX-TYPE N-GLYCAN RECOGNITION BY POTENT BROADLY JRNL TITL 2 NEUTRALIZING HIV ANTIBODIES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 E3268 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23115339 JRNL DOI 10.1073/PNAS.1217207109 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 16831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6611 - 4.3596 0.91 2657 138 0.1760 0.1808 REMARK 3 2 4.3596 - 3.4610 0.93 2621 131 0.1707 0.2228 REMARK 3 3 3.4610 - 3.0237 0.96 2634 139 0.2090 0.2413 REMARK 3 4 3.0237 - 2.7474 0.99 2695 140 0.2317 0.2810 REMARK 3 5 2.7474 - 2.5505 0.98 2704 141 0.2497 0.3350 REMARK 3 6 2.5505 - 2.4001 0.99 2686 145 0.2564 0.3508 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3497 REMARK 3 ANGLE : 0.949 4771 REMARK 3 CHIRALITY : 0.053 559 REMARK 3 PLANARITY : 0.005 590 REMARK 3 DIHEDRAL : 12.942 1269 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.1052 -1.1426 -28.2499 REMARK 3 T TENSOR REMARK 3 T11: 0.1922 T22: 0.1453 REMARK 3 T33: 0.1066 T12: -0.0202 REMARK 3 T13: -0.0182 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 4.7689 L22: 2.5196 REMARK 3 L33: 2.4136 L12: -0.8620 REMARK 3 L13: -1.5988 L23: -0.5474 REMARK 3 S TENSOR REMARK 3 S11: -0.0435 S12: -0.2209 S13: -0.1148 REMARK 3 S21: 0.0572 S22: 0.0406 S23: -0.0512 REMARK 3 S31: 0.1255 S32: 0.1542 S33: 0.0073 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 52 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1242 -2.6627 -21.3212 REMARK 3 T TENSOR REMARK 3 T11: 0.2266 T22: 0.1612 REMARK 3 T33: 0.1292 T12: -0.0165 REMARK 3 T13: 0.0049 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 2.5366 L22: 0.9378 REMARK 3 L33: 0.4640 L12: -1.1881 REMARK 3 L13: 0.7671 L23: -0.6337 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: 0.1912 S13: 0.0572 REMARK 3 S21: -0.0372 S22: -0.0892 S23: -0.0505 REMARK 3 S31: 0.0653 S32: 0.1001 S33: 0.0646 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 10 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.7908 6.3410 -0.1661 REMARK 3 T TENSOR REMARK 3 T11: 0.2223 T22: 0.2215 REMARK 3 T33: 0.2031 T12: 0.0203 REMARK 3 T13: 0.0466 T23: -0.0469 REMARK 3 L TENSOR REMARK 3 L11: 1.6961 L22: 3.8097 REMARK 3 L33: 2.3349 L12: -2.4105 REMARK 3 L13: 1.8219 L23: -2.0844 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: -0.0734 S13: -0.0244 REMARK 3 S21: 0.4190 S22: 0.3505 S23: -0.1511 REMARK 3 S31: -0.2185 S32: -0.1096 S33: -0.0971 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 31 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.5691 -0.4617 -10.3279 REMARK 3 T TENSOR REMARK 3 T11: 0.2071 T22: 0.2009 REMARK 3 T33: 0.2884 T12: 0.0042 REMARK 3 T13: -0.0008 T23: 0.0427 REMARK 3 L TENSOR REMARK 3 L11: 1.7111 L22: 2.3118 REMARK 3 L33: 2.2986 L12: -1.1835 REMARK 3 L13: 0.9197 L23: -0.9546 REMARK 3 S TENSOR REMARK 3 S11: 0.0899 S12: -0.2240 S13: -0.4125 REMARK 3 S21: -0.0495 S22: 0.1693 S23: 0.4073 REMARK 3 S31: 0.2320 S32: -0.2281 S33: -0.2571 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 62 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.8679 7.1838 -7.7261 REMARK 3 T TENSOR REMARK 3 T11: 0.1902 T22: 0.2193 REMARK 3 T33: 0.2713 T12: -0.0376 REMARK 3 T13: 0.0327 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 1.1178 L22: 2.7056 REMARK 3 L33: 1.9606 L12: -1.4467 REMARK 3 L13: 1.2945 L23: -1.1757 REMARK 3 S TENSOR REMARK 3 S11: -0.0859 S12: -0.2303 S13: 0.0278 REMARK 3 S21: 0.0931 S22: 0.1678 S23: 0.1243 REMARK 3 S31: -0.0261 S32: -0.1083 S33: -0.1161 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 99 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8283 -4.8439 -0.6332 REMARK 3 T TENSOR REMARK 3 T11: 0.2782 T22: 0.2008 REMARK 3 T33: 0.1971 T12: -0.0088 REMARK 3 T13: 0.0075 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 3.2976 L22: 0.5793 REMARK 3 L33: 0.1476 L12: -0.3824 REMARK 3 L13: -0.4374 L23: 0.2741 REMARK 3 S TENSOR REMARK 3 S11: -0.0408 S12: -0.2774 S13: -0.0700 REMARK 3 S21: 0.1612 S22: -0.0227 S23: 0.2147 REMARK 3 S31: 0.1045 S32: 0.0732 S33: 0.0974 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 120 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1258 0.8713 -8.4189 REMARK 3 T TENSOR REMARK 3 T11: 0.1651 T22: 0.1891 REMARK 3 T33: 0.1530 T12: 0.0318 REMARK 3 T13: 0.0095 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 3.1674 L22: 3.6048 REMARK 3 L33: 1.7857 L12: 1.2101 REMARK 3 L13: -0.7462 L23: -0.6259 REMARK 3 S TENSOR REMARK 3 S11: -0.0130 S12: -0.0611 S13: 0.0936 REMARK 3 S21: -0.1689 S22: -0.0719 S23: -0.2227 REMARK 3 S31: -0.1490 S32: 0.0491 S33: 0.0436 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FQC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000073222. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20621 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.209 REMARK 200 RESOLUTION RANGE LOW (A) : 38.656 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16100 REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.69100 REMARK 200 R SYM FOR SHELL (I) : 0.69100 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 10000, BIS TRIS HCL, CH3COOHNH4, REMARK 280 PH 5.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.89350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.05750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.89350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.05750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.89350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.89350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 127 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 THR H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 HIS H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 SER L 9 REMARK 465 THR L 210 REMARK 465 GLU L 211 REMARK 465 CYS L 212 REMARK 465 SER L 213 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN H 1 CG CD OE1 NE2 REMARK 480 LYS H 43 CG CD CE NZ REMARK 480 LYS H 64 CG CD CE NZ REMARK 480 LYS H 201 CG CD CE NZ REMARK 480 LYS H 206 CG CD CE NZ REMARK 480 ARG H 210 CG CD NE CZ NH1 NH2 REMARK 480 GLU H 212 CG CD OE1 OE2 REMARK 480 GLU L 25 CG CD OE1 OE2 REMARK 480 GLU L 60 CG CD OE1 OE2 REMARK 480 LYS L 95C CG CD CE NZ REMARK 480 LYS L 157 CG CD CE NZ REMARK 480 LYS L 167 CG CD CE NZ REMARK 480 GLU L 184 CG CD OE1 OE2 REMARK 480 LYS L 187 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN L 51 -58.60 76.37 REMARK 500 ASP L 152 -114.23 54.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FQ1 RELATED DB: PDB REMARK 900 RELATED ID: 4FQ2 RELATED DB: PDB REMARK 900 RELATED ID: 4FQQ RELATED DB: PDB DBREF 4FQC H 1 224 PDB 4FQC 4FQC 1 224 DBREF 4FQC L 9 213 PDB 4FQC 4FQC 9 213 SEQRES 1 H 244 GLN MET GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 244 PRO SER GLU THR LEU SER LEU THR CYS SER VAL SER GLY SEQRES 3 H 244 ALA SER ILE SER ASP SER TYR TRP SER TRP ILE ARG ARG SEQRES 4 H 244 SER PRO GLY LYS GLY LEU GLU TRP ILE GLY TYR VAL HIS SEQRES 5 H 244 LYS SER GLY ASP THR ASN TYR SER PRO SER LEU LYS SER SEQRES 6 H 244 ARG VAL ASN LEU SER LEU ASP THR SER LYS ASN GLN VAL SEQRES 7 H 244 SER LEU SER LEU VAL ALA ALA THR ALA ALA ASP SER GLY SEQRES 8 H 244 LYS TYR TYR CYS ALA ARG THR LEU HIS GLY ARG ARG ILE SEQRES 9 H 244 TYR GLY ILE VAL ALA PHE ASN GLU TRP PHE THR TYR PHE SEQRES 10 H 244 TYR MET ASP VAL TRP GLY ASN GLY THR GLN VAL THR VAL SEQRES 11 H 244 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 H 244 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 H 244 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 H 244 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 H 244 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 H 244 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 H 244 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 H 244 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER SEQRES 19 H 244 CYS ASP LYS THR HIS HIS HIS HIS HIS HIS SEQRES 1 L 211 SER ASP ILE SER VAL ALA PRO GLY GLU THR ALA ARG ILE SEQRES 2 L 211 SER CYS GLY GLU LYS SER LEU GLY SER ARG ALA VAL GLN SEQRES 3 L 211 TRP TYR GLN HIS ARG ALA GLY GLN ALA PRO SER LEU ILE SEQRES 4 L 211 ILE TYR ASN ASN GLN ASP ARG PRO SER GLY ILE PRO GLU SEQRES 5 L 211 ARG PHE SER GLY SER PRO ASP SER PRO PHE GLY THR THR SEQRES 6 L 211 ALA THR LEU THR ILE THR SER VAL GLU ALA GLY ASP GLU SEQRES 7 L 211 ALA ASP TYR TYR CYS HIS ILE TRP ASP SER ARG VAL PRO SEQRES 8 L 211 THR LYS TRP VAL PHE GLY GLY GLY THR THR LEU THR VAL SEQRES 9 L 211 LEU GLY GLN PRO LYS ALA ALA PRO SER VAL THR LEU PHE SEQRES 10 L 211 PRO PRO SER SER GLU GLU LEU GLN ALA ASN LYS ALA THR SEQRES 11 L 211 LEU VAL CYS LEU ILE SER ASP PHE TYR PRO GLY ALA VAL SEQRES 12 L 211 THR VAL ALA TRP LYS ALA ASP SER SER PRO VAL LYS ALA SEQRES 13 L 211 GLY VAL GLU THR THR THR PRO SER LYS GLN SER ASN ASN SEQRES 14 L 211 LYS TYR ALA ALA SER SER TYR LEU SER LEU THR PRO GLU SEQRES 15 L 211 GLN TRP LYS SER HIS ARG SER TYR SER CYS GLN VAL THR SEQRES 16 L 211 HIS GLU GLY SER THR VAL GLU LYS THR VAL ALA PRO THR SEQRES 17 L 211 GLU CYS SER MODRES 4FQC ASN H 105 ASN GLYCOSYLATION SITE HET NAG A 1 14 HET NAG A 2 14 HET BMA A 3 11 HET MAN A 4 11 HET NAG A 5 14 HET GAL A 6 11 HET SIA A 7 20 HET MAN A 8 11 HET NAG A 9 14 HET FUC A 10 10 HET TAM H 311 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM TAM TRIS(HYDROXYETHYL)AMINOMETHANE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN 2(C6 H12 O6) FORMUL 3 GAL C6 H12 O6 FORMUL 3 SIA C11 H19 N O9 FORMUL 3 FUC C6 H12 O5 FORMUL 4 TAM C7 H17 N O3 FORMUL 5 HOH *146(H2 O) HELIX 1 1 SER H 28 SER H 32 5 5 HELIX 2 2 THR H 83 SER H 87 5 5 HELIX 3 3 ILE H 100D ASN H 100H 5 5 HELIX 4 4 SER H 156 ALA H 158 5 3 HELIX 5 5 SER H 187 GLN H 192 1 6 HELIX 6 6 LYS H 201 ASN H 204 5 4 HELIX 7 7 GLU L 79 GLU L 83 5 5 HELIX 8 8 SER L 122 ALA L 128 1 7 HELIX 9 9 THR L 182 HIS L 189 1 8 SHEET 1 A 4 GLN H 3 SER H 7 0 SHEET 2 A 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 A 4 GLN H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 4 A 4 VAL H 67 ASP H 72 -1 N SER H 70 O SER H 79 SHEET 1 B 5 ASN H 58 TYR H 59 0 SHEET 2 B 5 LEU H 45 VAL H 51 -1 N TYR H 50 O ASN H 58 SHEET 3 B 5 TYR H 33 ARG H 39 -1 N ARG H 38 O GLU H 46 SHEET 4 B 5 GLY H 88 ILE H 100A-1 O TYR H 91 N ILE H 37 SHEET 5 B 5 TRP H 100J TRP H 103 -1 O TYR H 100O N LEU H 96 SHEET 1 C 5 ASN H 58 TYR H 59 0 SHEET 2 C 5 LEU H 45 VAL H 51 -1 N TYR H 50 O ASN H 58 SHEET 3 C 5 TYR H 33 ARG H 39 -1 N ARG H 38 O GLU H 46 SHEET 4 C 5 GLY H 88 ILE H 100A-1 O TYR H 91 N ILE H 37 SHEET 5 C 5 THR H 107 VAL H 109 -1 O VAL H 109 N GLY H 88 SHEET 1 D 4 SER H 120 LEU H 124 0 SHEET 1 E 4 SER H 120 LEU H 124 0 SHEET 1 G 5 ILE L 11 VAL L 13 0 SHEET 2 G 5 GLY L 99 VAL L 106 1 O THR L 105 N ILE L 11 SHEET 3 G 5 ASP L 85 HIS L 89 -1 N TYR L 86 O THR L 102 SHEET 4 G 5 GLN L 34 HIS L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 G 5 SER L 45 ILE L 48 -1 O ILE L 48 N TRP L 35 SHEET 1 H 3 ALA L 19 CYS L 23 0 SHEET 2 H 3 ALA L 71 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 3 H 3 PHE L 62 GLY L 64 -1 N SER L 63 O THR L 74 SHEET 1 I 4 SER L 115 PHE L 119 0 SHEET 2 I 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 I 4 TYR L 173 LEU L 181 -1 O ALA L 175 N ILE L 137 SHEET 4 I 4 VAL L 160 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 J 4 SER L 115 PHE L 119 0 SHEET 2 J 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 J 4 TYR L 173 LEU L 181 -1 O ALA L 175 N ILE L 137 SHEET 4 J 4 SER L 166 LYS L 167 -1 N SER L 166 O ALA L 174 SHEET 1 K 4 SER L 154 VAL L 156 0 SHEET 2 K 4 THR L 146 ALA L 151 -1 N ALA L 151 O SER L 154 SHEET 3 K 4 TYR L 192 HIS L 198 -1 O GLN L 195 N ALA L 148 SHEET 4 K 4 SER L 201 VAL L 207 -1 O VAL L 203 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 4 CYS L 135 CYS L 194 1555 1555 2.03 LINK ND2 ASN H 105 C1 NAG A 1 1555 1555 1.27 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.48 LINK O6 NAG A 1 C1 FUC A 10 1555 1555 1.42 LINK O4 NAG A 2 C1 BMA A 3 1555 1555 1.39 LINK O3 BMA A 3 C1 MAN A 4 1555 1555 1.36 LINK O6 BMA A 3 C1 MAN A 8 1555 1555 1.43 LINK O2 MAN A 4 C1 NAG A 5 1555 1555 1.42 LINK O4 NAG A 5 C1 GAL A 6 1555 1555 1.36 LINK O6 GAL A 6 C2 SIA A 7 1555 1555 1.29 LINK O2 MAN A 8 C1 NAG A 9 1555 1555 1.44 CISPEP 1 PHE H 146 PRO H 147 0 0.15 CISPEP 2 GLU H 148 PRO H 149 0 -3.12 CISPEP 3 SER L 66B PRO L 66C 0 -1.05 CISPEP 4 TYR L 141 PRO L 142 0 1.48 CRYST1 67.787 67.787 94.115 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014752 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014752 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010625 0.00000