data_4FQE # _entry.id 4FQE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4FQE pdb_00004fqe 10.2210/pdb4fqe/pdb RCSB RCSB073224 ? ? WWPDB D_1000073224 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4PR7 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4FQE _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-06-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hutter, C.' 1 'Peneff, C.M.' 2 'Wirth, C.' 3 'Schirmer, T.' 4 # _citation.id primary _citation.title 'Structure of the oligogalacturonate-specific KdgM porin.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 70 _citation.page_first 1770 _citation.page_last 1778 _citation.year 2014 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24914987 _citation.pdbx_database_id_DOI 10.1107/S1399004714007147 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hutter, C.A.' 1 ? primary 'Lehner, R.' 2 ? primary 'Wirth, C.h.' 3 ? primary 'Condemine, G.' 4 ? primary 'Peneff, C.' 5 ? primary 'Schirmer, T.' 6 ? # _cell.length_a 36.856 _cell.length_b 59.674 _cell.length_c 51.564 _cell.angle_alpha 90.000 _cell.angle_beta 106.800 _cell.angle_gamma 90.000 _cell.entry_id 4FQE _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.Int_Tables_number 4 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 4FQE _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Oligogalacturonate-specific porin kdgM' 25546.006 1 ? ? 'unp residues 21-236' ? 2 non-polymer syn N-OCTANE 114.229 3 ? ? ? ? 3 non-polymer syn '(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE' 306.438 5 ? ? ? ? 4 water nat water 18.015 66 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;VSIDYRHEMQDTAQAGHKDRLLISHRFANGFGLSSEVKWAQSSADKTPNKPFNEQVSNGTEVVASYVYKFNSVFSIEPGF SLESGSSNNNYRPYLRGRANVTDDLSVALRYRPYFKRNSGNIGKDNTMDKGYTLTGNIDYTFLKDYTIGYELEYKKGTSG KTILSDNDDYDITHNVKLSYKWDKNWKPYVEVGNVSGSETTDERQTRYRVGVQYSFHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;VSIDYRHEMQDTAQAGHKDRLLISHRFANGFGLSSEVKWAQSSADKTPNKPFNEQVSNGTEVVASYVYKFNSVFSIEPGF SLESGSSNNNYRPYLRGRANVTDDLSVALRYRPYFKRNSGNIGKDNTMDKGYTLTGNIDYTFLKDYTIGYELEYKKGTSG KTILSDNDDYDITHNVKLSYKWDKNWKPYVEVGNVSGSETTDERQTRYRVGVQYSFHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 SER n 1 3 ILE n 1 4 ASP n 1 5 TYR n 1 6 ARG n 1 7 HIS n 1 8 GLU n 1 9 MET n 1 10 GLN n 1 11 ASP n 1 12 THR n 1 13 ALA n 1 14 GLN n 1 15 ALA n 1 16 GLY n 1 17 HIS n 1 18 LYS n 1 19 ASP n 1 20 ARG n 1 21 LEU n 1 22 LEU n 1 23 ILE n 1 24 SER n 1 25 HIS n 1 26 ARG n 1 27 PHE n 1 28 ALA n 1 29 ASN n 1 30 GLY n 1 31 PHE n 1 32 GLY n 1 33 LEU n 1 34 SER n 1 35 SER n 1 36 GLU n 1 37 VAL n 1 38 LYS n 1 39 TRP n 1 40 ALA n 1 41 GLN n 1 42 SER n 1 43 SER n 1 44 ALA n 1 45 ASP n 1 46 LYS n 1 47 THR n 1 48 PRO n 1 49 ASN n 1 50 LYS n 1 51 PRO n 1 52 PHE n 1 53 ASN n 1 54 GLU n 1 55 GLN n 1 56 VAL n 1 57 SER n 1 58 ASN n 1 59 GLY n 1 60 THR n 1 61 GLU n 1 62 VAL n 1 63 VAL n 1 64 ALA n 1 65 SER n 1 66 TYR n 1 67 VAL n 1 68 TYR n 1 69 LYS n 1 70 PHE n 1 71 ASN n 1 72 SER n 1 73 VAL n 1 74 PHE n 1 75 SER n 1 76 ILE n 1 77 GLU n 1 78 PRO n 1 79 GLY n 1 80 PHE n 1 81 SER n 1 82 LEU n 1 83 GLU n 1 84 SER n 1 85 GLY n 1 86 SER n 1 87 SER n 1 88 ASN n 1 89 ASN n 1 90 ASN n 1 91 TYR n 1 92 ARG n 1 93 PRO n 1 94 TYR n 1 95 LEU n 1 96 ARG n 1 97 GLY n 1 98 ARG n 1 99 ALA n 1 100 ASN n 1 101 VAL n 1 102 THR n 1 103 ASP n 1 104 ASP n 1 105 LEU n 1 106 SER n 1 107 VAL n 1 108 ALA n 1 109 LEU n 1 110 ARG n 1 111 TYR n 1 112 ARG n 1 113 PRO n 1 114 TYR n 1 115 PHE n 1 116 LYS n 1 117 ARG n 1 118 ASN n 1 119 SER n 1 120 GLY n 1 121 ASN n 1 122 ILE n 1 123 GLY n 1 124 LYS n 1 125 ASP n 1 126 ASN n 1 127 THR n 1 128 MET n 1 129 ASP n 1 130 LYS n 1 131 GLY n 1 132 TYR n 1 133 THR n 1 134 LEU n 1 135 THR n 1 136 GLY n 1 137 ASN n 1 138 ILE n 1 139 ASP n 1 140 TYR n 1 141 THR n 1 142 PHE n 1 143 LEU n 1 144 LYS n 1 145 ASP n 1 146 TYR n 1 147 THR n 1 148 ILE n 1 149 GLY n 1 150 TYR n 1 151 GLU n 1 152 LEU n 1 153 GLU n 1 154 TYR n 1 155 LYS n 1 156 LYS n 1 157 GLY n 1 158 THR n 1 159 SER n 1 160 GLY n 1 161 LYS n 1 162 THR n 1 163 ILE n 1 164 LEU n 1 165 SER n 1 166 ASP n 1 167 ASN n 1 168 ASP n 1 169 ASP n 1 170 TYR n 1 171 ASP n 1 172 ILE n 1 173 THR n 1 174 HIS n 1 175 ASN n 1 176 VAL n 1 177 LYS n 1 178 LEU n 1 179 SER n 1 180 TYR n 1 181 LYS n 1 182 TRP n 1 183 ASP n 1 184 LYS n 1 185 ASN n 1 186 TRP n 1 187 LYS n 1 188 PRO n 1 189 TYR n 1 190 VAL n 1 191 GLU n 1 192 VAL n 1 193 GLY n 1 194 ASN n 1 195 VAL n 1 196 SER n 1 197 GLY n 1 198 SER n 1 199 GLU n 1 200 THR n 1 201 THR n 1 202 ASP n 1 203 GLU n 1 204 ARG n 1 205 GLN n 1 206 THR n 1 207 ARG n 1 208 TYR n 1 209 ARG n 1 210 VAL n 1 211 GLY n 1 212 VAL n 1 213 GLN n 1 214 TYR n 1 215 SER n 1 216 PHE n 1 217 HIS n 1 218 HIS n 1 219 HIS n 1 220 HIS n 1 221 HIS n 1 222 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'kdgM, Dda3937_03362' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 3937 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Dickeya dadantii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 198628 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)omp8/pLys' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pKSM717 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KDGM_DICD3 _struct_ref.pdbx_db_accession Q934G3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VSIDYRHEMQDTAQAGHKDRLLISHRFANGFGLSSEVKWAQSSADKTPNKPFNEQVSNGTEVVASYVYKFNSVFSIEPGF SLESGSSNNNYRPYLRGRANVTDDLSVALRYRPYFKRNSGNIGKDNTMDKGYTLTGNIDYTFLKDYTIGYELEYKKGTSG KTILSDNDDYDITHNVKLSYKWDKNWKPYVEVGNVSGSETTDERQTRYRVGVQYSF ; _struct_ref.pdbx_align_begin 21 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4FQE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 216 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q934G3 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 236 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 216 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4FQE HIS A 217 ? UNP Q934G3 ? ? 'expression tag' 217 1 1 4FQE HIS A 218 ? UNP Q934G3 ? ? 'expression tag' 218 2 1 4FQE HIS A 219 ? UNP Q934G3 ? ? 'expression tag' 219 3 1 4FQE HIS A 220 ? UNP Q934G3 ? ? 'expression tag' 220 4 1 4FQE HIS A 221 ? UNP Q934G3 ? ? 'expression tag' 221 5 1 4FQE HIS A 222 ? UNP Q934G3 ? ? 'expression tag' 222 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C8E non-polymer . '(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE' ? 'C16 H34 O5' 306.438 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OCT non-polymer . N-OCTANE ? 'C8 H18' 114.229 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4FQE _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 44.0 _exptl_crystal.density_Matthews 2.2 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '0.1M MES, 22% MPD, 36mM digalacturonate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2011-04-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.008 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.pdbx_wavelength_list 1.008 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06DA # _reflns.d_resolution_low 49.36 _reflns.d_resolution_high 1.93 _reflns.number_obs 16187 _reflns.pdbx_Rmerge_I_obs 0.073 _reflns.pdbx_netI_over_sigmaI 10.4549 _reflns.percent_possible_obs 99.94 _reflns.pdbx_redundancy 3.78 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3.0 _reflns.entry_id 4FQE _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_low _reflns_shell.d_res_high _reflns_shell.number_measured_all _reflns_shell.number_unique_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.percent_possible_all _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.03 1.93 8662 2329 0.39 1.57 99.93 3.72 ? ? ? ? ? 1 1 2.16 2.03 8431 2234 0.31 0.79 99.95 3.77 ? ? ? ? ? 2 1 2.31 2.16 7953 2101 0.22 1.98 100.00 3.79 ? ? ? ? ? 3 1 2.49 2.31 7414 1946 0.15 4.53 100.00 3.81 ? ? ? ? ? 4 1 2.73 2.49 6856 1796 0.12 2.72 100.00 3.82 ? ? ? ? ? 5 1 3.05 2.73 6254 1639 0.08 6.83 100.00 3.82 ? ? ? ? ? 6 1 3.52 3.05 5471 1433 0.07 6.44 100.00 3.82 ? ? ? ? ? 7 1 4.32 3.52 4634 1221 0.05 9.93 100.00 3.80 ? ? ? ? ? 8 1 6.10 4.32 3608 957 0.03 17.98 100.00 3.77 ? ? ? ? ? 9 1 49.36 6.10 1933 531 0.03 18.76 98.65 3.64 ? ? ? ? ? 10 1 # _refine.entry_id 4FQE _refine.ls_d_res_high 1.93 _refine.ls_d_res_low 15.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 96.040 _refine.ls_number_reflns_obs 16172 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.215 _refine.ls_R_factor_R_work 0.213 _refine.ls_R_factor_R_free 0.248 _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 790 _refine.B_iso_mean 33.024 _refine.aniso_B[1][1] -0.640 _refine.aniso_B[2][2] 0.760 _refine.aniso_B[3][3] -1.070 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -1.630 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.929 _refine.pdbx_overall_ESU_R 0.180 _refine.pdbx_overall_ESU_R_Free 0.159 _refine.overall_SU_ML 0.115 _refine.overall_SU_B 7.628 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.B_iso_max 68.70 _refine.B_iso_min 5.53 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 16172 _refine.ls_R_factor_all 0.215 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 2wjq _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1411 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 129 _refine_hist.number_atoms_solvent 66 _refine_hist.number_atoms_total 1606 _refine_hist.d_res_high 1.93 _refine_hist.d_res_low 15.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1598 0.011 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1220 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2109 1.503 1.985 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2936 0.773 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 174 6.766 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 79 35.352 22.532 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 249 14.364 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 13 14.420 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 205 0.089 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1636 0.006 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 353 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.908 _refine_ls_shell.d_res_low 1.957 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 52.420 _refine_ls_shell.number_reflns_R_work 601 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.240 _refine_ls_shell.R_factor_R_free 0.321 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 26 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 627 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4FQE _struct.title 'KdgM porin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4FQE _struct_keywords.text 'beta barrel, porin, outer membrane protein, oligogalacturonate specificity, MEMBRANE PROTEIN' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A OCT 302 ? 1 'BINDING SITE FOR RESIDUE OCT A 302' AC2 Software A C8E 304 ? 3 'BINDING SITE FOR RESIDUE C8E A 304' AC3 Software A C8E 305 ? 2 'BINDING SITE FOR RESIDUE C8E A 305' AC4 Software A C8E 306 ? 5 'BINDING SITE FOR RESIDUE C8E A 306' AC5 Software A C8E 307 ? 7 'BINDING SITE FOR RESIDUE C8E A 307' AC6 Software A C8E 308 ? 4 'BINDING SITE FOR RESIDUE C8E A 308' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 PHE A 27 ? PHE A 27 . ? 1_555 ? 2 AC2 3 ASN A 58 ? ASN A 58 . ? 1_655 ? 3 AC2 3 GLY A 97 ? GLY A 97 . ? 1_555 ? 4 AC2 3 TYR A 111 ? TYR A 111 . ? 1_555 ? 5 AC3 2 THR A 60 ? THR A 60 . ? 1_555 ? 6 AC3 2 ALA A 64 ? ALA A 64 . ? 1_555 ? 7 AC4 5 ILE A 3 ? ILE A 3 . ? 1_555 ? 8 AC4 5 LEU A 21 ? LEU A 21 . ? 1_555 ? 9 AC4 5 LEU A 105 ? LEU A 105 . ? 1_455 ? 10 AC4 5 TYR A 140 ? TYR A 140 . ? 1_455 ? 11 AC4 5 C8E I . ? C8E A 308 . ? 1_455 ? 12 AC5 7 SER A 65 ? SER A 65 . ? 1_555 ? 13 AC5 7 PRO A 78 ? PRO A 78 . ? 1_555 ? 14 AC5 7 GLY A 79 ? GLY A 79 . ? 1_555 ? 15 AC5 7 PHE A 80 ? PHE A 80 . ? 1_555 ? 16 AC5 7 PRO A 93 ? PRO A 93 . ? 1_555 ? 17 AC5 7 TYR A 94 ? TYR A 94 . ? 1_555 ? 18 AC5 7 PRO A 113 ? PRO A 113 . ? 1_555 ? 19 AC6 4 TYR A 140 ? TYR A 140 . ? 1_555 ? 20 AC6 4 TYR A 150 ? TYR A 150 . ? 1_555 ? 21 AC6 4 ASN A 194 ? ASN A 194 . ? 1_555 ? 22 AC6 4 C8E G . ? C8E A 306 . ? 1_655 ? # _atom_sites.entry_id 4FQE _atom_sites.fract_transf_matrix[1][1] 0.027133 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008190 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016758 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020258 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 1 VAL VAL A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 TYR 5 5 5 TYR TYR A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 HIS 7 7 7 HIS HIS A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 MET 9 9 9 MET MET A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 THR 12 12 ? ? ? A . n A 1 13 ALA 13 13 ? ? ? A . n A 1 14 GLN 14 14 ? ? ? A . n A 1 15 ALA 15 15 ? ? ? A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 HIS 17 17 17 HIS HIS A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 HIS 25 25 25 HIS HIS A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 TRP 39 39 39 TRP TRP A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 SER 42 42 ? ? ? A . n A 1 43 SER 43 43 ? ? ? A . n A 1 44 ALA 44 44 ? ? ? A . n A 1 45 ASP 45 45 ? ? ? A . n A 1 46 LYS 46 46 ? ? ? A . n A 1 47 THR 47 47 ? ? ? A . n A 1 48 PRO 48 48 ? ? ? A . n A 1 49 ASN 49 49 ? ? ? A . n A 1 50 LYS 50 50 ? ? ? A . n A 1 51 PRO 51 51 ? ? ? A . n A 1 52 PHE 52 52 ? ? ? A . n A 1 53 ASN 53 53 ? ? ? A . n A 1 54 GLU 54 54 ? ? ? A . n A 1 55 GLN 55 55 ? ? ? A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 ASN 58 58 58 ASN ASN A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 PHE 70 70 70 PHE PHE A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 ALA 99 99 99 ALA ALA A . n A 1 100 ASN 100 100 100 ASN ASN A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 TYR 111 111 111 TYR TYR A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 PHE 115 115 115 PHE PHE A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 ARG 117 117 117 ARG ARG A . n A 1 118 ASN 118 118 ? ? ? A . n A 1 119 SER 119 119 ? ? ? A . n A 1 120 GLY 120 120 ? ? ? A . n A 1 121 ASN 121 121 ? ? ? A . n A 1 122 ILE 122 122 ? ? ? A . n A 1 123 GLY 123 123 ? ? ? A . n A 1 124 LYS 124 124 ? ? ? A . n A 1 125 ASP 125 125 ? ? ? A . n A 1 126 ASN 126 126 ? ? ? A . n A 1 127 THR 127 127 ? ? ? A . n A 1 128 MET 128 128 ? ? ? A . n A 1 129 ASP 129 129 ? ? ? A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 TYR 132 132 132 TYR TYR A . n A 1 133 THR 133 133 133 THR THR A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 THR 135 135 135 THR THR A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 ASN 137 137 137 ASN ASN A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 ASP 139 139 139 ASP ASP A . n A 1 140 TYR 140 140 140 TYR TYR A . n A 1 141 THR 141 141 141 THR THR A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 LYS 144 144 144 LYS LYS A . n A 1 145 ASP 145 145 145 ASP ASP A . n A 1 146 TYR 146 146 146 TYR TYR A . n A 1 147 THR 147 147 147 THR THR A . n A 1 148 ILE 148 148 148 ILE ILE A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 TYR 150 150 150 TYR TYR A . n A 1 151 GLU 151 151 151 GLU GLU A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 GLU 153 153 153 GLU GLU A . n A 1 154 TYR 154 154 154 TYR TYR A . n A 1 155 LYS 155 155 155 LYS LYS A . n A 1 156 LYS 156 156 156 LYS LYS A . n A 1 157 GLY 157 157 157 GLY GLY A . n A 1 158 THR 158 158 158 THR THR A . n A 1 159 SER 159 159 159 SER SER A . n A 1 160 GLY 160 160 ? ? ? A . n A 1 161 LYS 161 161 ? ? ? A . n A 1 162 THR 162 162 ? ? ? A . n A 1 163 ILE 163 163 ? ? ? A . n A 1 164 LEU 164 164 ? ? ? A . n A 1 165 SER 165 165 ? ? ? A . n A 1 166 ASP 166 166 ? ? ? A . n A 1 167 ASN 167 167 ? ? ? A . n A 1 168 ASP 168 168 ? ? ? A . n A 1 169 ASP 169 169 ? ? ? A . n A 1 170 TYR 170 170 170 TYR TYR A . n A 1 171 ASP 171 171 171 ASP ASP A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 THR 173 173 173 THR THR A . n A 1 174 HIS 174 174 174 HIS HIS A . n A 1 175 ASN 175 175 175 ASN ASN A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 LYS 177 177 177 LYS LYS A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 SER 179 179 179 SER SER A . n A 1 180 TYR 180 180 180 TYR TYR A . n A 1 181 LYS 181 181 181 LYS LYS A . n A 1 182 TRP 182 182 182 TRP TRP A . n A 1 183 ASP 183 183 183 ASP ASP A . n A 1 184 LYS 184 184 184 LYS LYS A . n A 1 185 ASN 185 185 185 ASN ASN A . n A 1 186 TRP 186 186 186 TRP TRP A . n A 1 187 LYS 187 187 187 LYS LYS A . n A 1 188 PRO 188 188 188 PRO PRO A . n A 1 189 TYR 189 189 189 TYR TYR A . n A 1 190 VAL 190 190 190 VAL VAL A . n A 1 191 GLU 191 191 191 GLU GLU A . n A 1 192 VAL 192 192 192 VAL VAL A . n A 1 193 GLY 193 193 193 GLY GLY A . n A 1 194 ASN 194 194 194 ASN ASN A . n A 1 195 VAL 195 195 195 VAL VAL A . n A 1 196 SER 196 196 196 SER SER A . n A 1 197 GLY 197 197 ? ? ? A . n A 1 198 SER 198 198 ? ? ? A . n A 1 199 GLU 199 199 ? ? ? A . n A 1 200 THR 200 200 ? ? ? A . n A 1 201 THR 201 201 ? ? ? A . n A 1 202 ASP 202 202 ? ? ? A . n A 1 203 GLU 203 203 ? ? ? A . n A 1 204 ARG 204 204 204 ARG ARG A . n A 1 205 GLN 205 205 205 GLN GLN A . n A 1 206 THR 206 206 206 THR THR A . n A 1 207 ARG 207 207 207 ARG ARG A . n A 1 208 TYR 208 208 208 TYR TYR A . n A 1 209 ARG 209 209 209 ARG ARG A . n A 1 210 VAL 210 210 210 VAL VAL A . n A 1 211 GLY 211 211 211 GLY GLY A . n A 1 212 VAL 212 212 212 VAL VAL A . n A 1 213 GLN 213 213 213 GLN GLN A . n A 1 214 TYR 214 214 214 TYR TYR A . n A 1 215 SER 215 215 215 SER SER A . n A 1 216 PHE 216 216 216 PHE PHE A . n A 1 217 HIS 217 217 217 HIS HIS A . n A 1 218 HIS 218 218 ? ? ? A . n A 1 219 HIS 219 219 ? ? ? A . n A 1 220 HIS 220 220 ? ? ? A . n A 1 221 HIS 221 221 ? ? ? A . n A 1 222 HIS 222 222 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OCT 1 301 1 OCT OCT A . C 2 OCT 1 302 2 OCT OCT A . D 2 OCT 1 303 3 OCT OCT A . E 3 C8E 1 304 1 C8E C8E A . F 3 C8E 1 305 2 C8E C8E A . G 3 C8E 1 306 3 C8E C8E A . H 3 C8E 1 307 4 C8E C8E A . I 3 C8E 1 308 5 C8E C8E A . J 4 HOH 1 401 1 HOH HOH A . J 4 HOH 2 402 2 HOH HOH A . J 4 HOH 3 403 3 HOH HOH A . J 4 HOH 4 404 4 HOH HOH A . J 4 HOH 5 405 5 HOH HOH A . J 4 HOH 6 406 6 HOH HOH A . J 4 HOH 7 407 7 HOH HOH A . J 4 HOH 8 408 8 HOH HOH A . J 4 HOH 9 409 9 HOH HOH A . J 4 HOH 10 410 10 HOH HOH A . J 4 HOH 11 411 11 HOH HOH A . J 4 HOH 12 412 12 HOH HOH A . J 4 HOH 13 413 13 HOH HOH A . J 4 HOH 14 414 14 HOH HOH A . J 4 HOH 15 415 15 HOH HOH A . J 4 HOH 16 416 16 HOH HOH A . J 4 HOH 17 417 17 HOH HOH A . J 4 HOH 18 418 18 HOH HOH A . J 4 HOH 19 419 19 HOH HOH A . J 4 HOH 20 420 20 HOH HOH A . J 4 HOH 21 421 21 HOH HOH A . J 4 HOH 22 422 22 HOH HOH A . J 4 HOH 23 423 23 HOH HOH A . J 4 HOH 24 424 24 HOH HOH A . J 4 HOH 25 425 27 HOH HOH A . J 4 HOH 26 426 29 HOH HOH A . J 4 HOH 27 427 31 HOH HOH A . J 4 HOH 28 428 37 HOH HOH A . J 4 HOH 29 429 38 HOH HOH A . J 4 HOH 30 430 43 HOH HOH A . J 4 HOH 31 431 45 HOH HOH A . J 4 HOH 32 432 53 HOH HOH A . J 4 HOH 33 433 54 HOH HOH A . J 4 HOH 34 434 56 HOH HOH A . J 4 HOH 35 435 57 HOH HOH A . J 4 HOH 36 436 58 HOH HOH A . J 4 HOH 37 437 59 HOH HOH A . J 4 HOH 38 438 61 HOH HOH A . J 4 HOH 39 439 67 HOH HOH A . J 4 HOH 40 440 68 HOH HOH A . J 4 HOH 41 441 70 HOH HOH A . J 4 HOH 42 442 71 HOH HOH A . J 4 HOH 43 443 75 HOH HOH A . J 4 HOH 44 444 76 HOH HOH A . J 4 HOH 45 445 78 HOH HOH A . J 4 HOH 46 446 80 HOH HOH A . J 4 HOH 47 447 82 HOH HOH A . J 4 HOH 48 448 83 HOH HOH A . J 4 HOH 49 449 84 HOH HOH A . J 4 HOH 50 450 85 HOH HOH A . J 4 HOH 51 451 86 HOH HOH A . J 4 HOH 52 452 88 HOH HOH A . J 4 HOH 53 453 89 HOH HOH A . J 4 HOH 54 454 90 HOH HOH A . J 4 HOH 55 455 92 HOH HOH A . J 4 HOH 56 456 94 HOH HOH A . J 4 HOH 57 457 95 HOH HOH A . J 4 HOH 58 458 96 HOH HOH A . J 4 HOH 59 459 98 HOH HOH A . J 4 HOH 60 460 99 HOH HOH A . J 4 HOH 61 461 101 HOH HOH A . J 4 HOH 62 462 103 HOH HOH A . J 4 HOH 63 463 104 HOH HOH A . J 4 HOH 64 464 105 HOH HOH A . J 4 HOH 65 465 106 HOH HOH A . J 4 HOH 66 466 107 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-06-26 2 'Structure model' 1 1 2014-06-11 3 'Structure model' 1 2 2014-07-02 4 'Structure model' 1 3 2017-11-15 5 'Structure model' 1 4 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_ref_seq_dif.details' 5 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _diffrn_reflns.number 61216 _diffrn_reflns.diffrn_id 1 # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 8.0900 _pdbx_refine_tls.origin_y 1.5410 _pdbx_refine_tls.origin_z 2.2280 _pdbx_refine_tls.T[1][1] 0.0777 _pdbx_refine_tls.T[2][2] 0.0482 _pdbx_refine_tls.T[3][3] 0.3302 _pdbx_refine_tls.T[1][2] -0.0024 _pdbx_refine_tls.T[1][3] 0.0956 _pdbx_refine_tls.T[2][3] 0.0160 _pdbx_refine_tls.L[1][1] 1.1447 _pdbx_refine_tls.L[2][2] 1.8565 _pdbx_refine_tls.L[3][3] 0.0320 _pdbx_refine_tls.L[1][2] -0.0172 _pdbx_refine_tls.L[1][3] 0.0837 _pdbx_refine_tls.L[2][3] 0.2144 _pdbx_refine_tls.S[1][1] -0.0369 _pdbx_refine_tls.S[2][2] 0.0314 _pdbx_refine_tls.S[3][3] 0.0055 _pdbx_refine_tls.S[1][2] -0.0090 _pdbx_refine_tls.S[1][3] 0.0328 _pdbx_refine_tls.S[2][3] 0.0269 _pdbx_refine_tls.S[2][1] 0.0926 _pdbx_refine_tls.S[3][1] 0.0097 _pdbx_refine_tls.S[3][2] 0.0085 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 217 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 A 301 A 308 ? . . . . ? 'X-RAY DIFFRACTION' 3 1 A 401 A 466 ? . . . . ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.description _software.pdbx_ordinal SCALA 'CCP4_3.3.16 2010/01/06' ? program 'P.R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 'scale together multiple observations of reflections' 1 MAR345 . ? ? ? ? 'data collection' ? ? ? ? 2 MOSFLM . ? ? ? ? 'data reduction' ? ? ? ? 3 PHASER . ? ? ? ? phasing ? ? ? ? 4 REFMAC 5.6.0117 ? ? ? ? refinement ? ? ? ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 410 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 455 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 117 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 117 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 117 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.60 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.30 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 10 ? ? -110.75 -151.42 2 1 LYS A 144 ? ? 64.43 -50.81 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 12 ? A THR 12 2 1 Y 1 A ALA 13 ? A ALA 13 3 1 Y 1 A GLN 14 ? A GLN 14 4 1 Y 1 A ALA 15 ? A ALA 15 5 1 Y 1 A SER 42 ? A SER 42 6 1 Y 1 A SER 43 ? A SER 43 7 1 Y 1 A ALA 44 ? A ALA 44 8 1 Y 1 A ASP 45 ? A ASP 45 9 1 Y 1 A LYS 46 ? A LYS 46 10 1 Y 1 A THR 47 ? A THR 47 11 1 Y 1 A PRO 48 ? A PRO 48 12 1 Y 1 A ASN 49 ? A ASN 49 13 1 Y 1 A LYS 50 ? A LYS 50 14 1 Y 1 A PRO 51 ? A PRO 51 15 1 Y 1 A PHE 52 ? A PHE 52 16 1 Y 1 A ASN 53 ? A ASN 53 17 1 Y 1 A GLU 54 ? A GLU 54 18 1 Y 1 A GLN 55 ? A GLN 55 19 1 Y 1 A ASN 118 ? A ASN 118 20 1 Y 1 A SER 119 ? A SER 119 21 1 Y 1 A GLY 120 ? A GLY 120 22 1 Y 1 A ASN 121 ? A ASN 121 23 1 Y 1 A ILE 122 ? A ILE 122 24 1 Y 1 A GLY 123 ? A GLY 123 25 1 Y 1 A LYS 124 ? A LYS 124 26 1 Y 1 A ASP 125 ? A ASP 125 27 1 Y 1 A ASN 126 ? A ASN 126 28 1 Y 1 A THR 127 ? A THR 127 29 1 Y 1 A MET 128 ? A MET 128 30 1 Y 1 A ASP 129 ? A ASP 129 31 1 Y 1 A GLY 160 ? A GLY 160 32 1 Y 1 A LYS 161 ? A LYS 161 33 1 Y 1 A THR 162 ? A THR 162 34 1 Y 1 A ILE 163 ? A ILE 163 35 1 Y 1 A LEU 164 ? A LEU 164 36 1 Y 1 A SER 165 ? A SER 165 37 1 Y 1 A ASP 166 ? A ASP 166 38 1 Y 1 A ASN 167 ? A ASN 167 39 1 Y 1 A ASP 168 ? A ASP 168 40 1 Y 1 A ASP 169 ? A ASP 169 41 1 Y 1 A GLY 197 ? A GLY 197 42 1 Y 1 A SER 198 ? A SER 198 43 1 Y 1 A GLU 199 ? A GLU 199 44 1 Y 1 A THR 200 ? A THR 200 45 1 Y 1 A THR 201 ? A THR 201 46 1 Y 1 A ASP 202 ? A ASP 202 47 1 Y 1 A GLU 203 ? A GLU 203 48 1 Y 1 A HIS 218 ? A HIS 218 49 1 Y 1 A HIS 219 ? A HIS 219 50 1 Y 1 A HIS 220 ? A HIS 220 51 1 Y 1 A HIS 221 ? A HIS 221 52 1 Y 1 A HIS 222 ? A HIS 222 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 C8E C1 C N N 74 C8E C2 C N N 75 C8E C3 C N N 76 C8E C4 C N N 77 C8E C5 C N N 78 C8E C6 C N N 79 C8E C7 C N N 80 C8E C8 C N N 81 C8E O9 O N N 82 C8E C10 C N N 83 C8E C11 C N N 84 C8E O12 O N N 85 C8E C13 C N N 86 C8E C14 C N N 87 C8E O15 O N N 88 C8E C16 C N N 89 C8E C17 C N N 90 C8E O18 O N N 91 C8E C19 C N N 92 C8E C20 C N N 93 C8E O21 O N N 94 C8E H11 H N N 95 C8E H12 H N N 96 C8E H13 H N N 97 C8E H21 H N N 98 C8E H22 H N N 99 C8E H31 H N N 100 C8E H32 H N N 101 C8E H41 H N N 102 C8E H42 H N N 103 C8E H51 H N N 104 C8E H52 H N N 105 C8E H61 H N N 106 C8E H62 H N N 107 C8E H71 H N N 108 C8E H72 H N N 109 C8E H81 H N N 110 C8E H82 H N N 111 C8E H101 H N N 112 C8E H102 H N N 113 C8E H111 H N N 114 C8E H112 H N N 115 C8E H131 H N N 116 C8E H132 H N N 117 C8E H141 H N N 118 C8E H142 H N N 119 C8E H161 H N N 120 C8E H162 H N N 121 C8E H171 H N N 122 C8E H172 H N N 123 C8E H191 H N N 124 C8E H192 H N N 125 C8E H201 H N N 126 C8E H202 H N N 127 C8E HO2 H N N 128 GLN N N N N 129 GLN CA C N S 130 GLN C C N N 131 GLN O O N N 132 GLN CB C N N 133 GLN CG C N N 134 GLN CD C N N 135 GLN OE1 O N N 136 GLN NE2 N N N 137 GLN OXT O N N 138 GLN H H N N 139 GLN H2 H N N 140 GLN HA H N N 141 GLN HB2 H N N 142 GLN HB3 H N N 143 GLN HG2 H N N 144 GLN HG3 H N N 145 GLN HE21 H N N 146 GLN HE22 H N N 147 GLN HXT H N N 148 GLU N N N N 149 GLU CA C N S 150 GLU C C N N 151 GLU O O N N 152 GLU CB C N N 153 GLU CG C N N 154 GLU CD C N N 155 GLU OE1 O N N 156 GLU OE2 O N N 157 GLU OXT O N N 158 GLU H H N N 159 GLU H2 H N N 160 GLU HA H N N 161 GLU HB2 H N N 162 GLU HB3 H N N 163 GLU HG2 H N N 164 GLU HG3 H N N 165 GLU HE2 H N N 166 GLU HXT H N N 167 GLY N N N N 168 GLY CA C N N 169 GLY C C N N 170 GLY O O N N 171 GLY OXT O N N 172 GLY H H N N 173 GLY H2 H N N 174 GLY HA2 H N N 175 GLY HA3 H N N 176 GLY HXT H N N 177 HIS N N N N 178 HIS CA C N S 179 HIS C C N N 180 HIS O O N N 181 HIS CB C N N 182 HIS CG C Y N 183 HIS ND1 N Y N 184 HIS CD2 C Y N 185 HIS CE1 C Y N 186 HIS NE2 N Y N 187 HIS OXT O N N 188 HIS H H N N 189 HIS H2 H N N 190 HIS HA H N N 191 HIS HB2 H N N 192 HIS HB3 H N N 193 HIS HD1 H N N 194 HIS HD2 H N N 195 HIS HE1 H N N 196 HIS HE2 H N N 197 HIS HXT H N N 198 HOH O O N N 199 HOH H1 H N N 200 HOH H2 H N N 201 ILE N N N N 202 ILE CA C N S 203 ILE C C N N 204 ILE O O N N 205 ILE CB C N S 206 ILE CG1 C N N 207 ILE CG2 C N N 208 ILE CD1 C N N 209 ILE OXT O N N 210 ILE H H N N 211 ILE H2 H N N 212 ILE HA H N N 213 ILE HB H N N 214 ILE HG12 H N N 215 ILE HG13 H N N 216 ILE HG21 H N N 217 ILE HG22 H N N 218 ILE HG23 H N N 219 ILE HD11 H N N 220 ILE HD12 H N N 221 ILE HD13 H N N 222 ILE HXT H N N 223 LEU N N N N 224 LEU CA C N S 225 LEU C C N N 226 LEU O O N N 227 LEU CB C N N 228 LEU CG C N N 229 LEU CD1 C N N 230 LEU CD2 C N N 231 LEU OXT O N N 232 LEU H H N N 233 LEU H2 H N N 234 LEU HA H N N 235 LEU HB2 H N N 236 LEU HB3 H N N 237 LEU HG H N N 238 LEU HD11 H N N 239 LEU HD12 H N N 240 LEU HD13 H N N 241 LEU HD21 H N N 242 LEU HD22 H N N 243 LEU HD23 H N N 244 LEU HXT H N N 245 LYS N N N N 246 LYS CA C N S 247 LYS C C N N 248 LYS O O N N 249 LYS CB C N N 250 LYS CG C N N 251 LYS CD C N N 252 LYS CE C N N 253 LYS NZ N N N 254 LYS OXT O N N 255 LYS H H N N 256 LYS H2 H N N 257 LYS HA H N N 258 LYS HB2 H N N 259 LYS HB3 H N N 260 LYS HG2 H N N 261 LYS HG3 H N N 262 LYS HD2 H N N 263 LYS HD3 H N N 264 LYS HE2 H N N 265 LYS HE3 H N N 266 LYS HZ1 H N N 267 LYS HZ2 H N N 268 LYS HZ3 H N N 269 LYS HXT H N N 270 MET N N N N 271 MET CA C N S 272 MET C C N N 273 MET O O N N 274 MET CB C N N 275 MET CG C N N 276 MET SD S N N 277 MET CE C N N 278 MET OXT O N N 279 MET H H N N 280 MET H2 H N N 281 MET HA H N N 282 MET HB2 H N N 283 MET HB3 H N N 284 MET HG2 H N N 285 MET HG3 H N N 286 MET HE1 H N N 287 MET HE2 H N N 288 MET HE3 H N N 289 MET HXT H N N 290 OCT C1 C N N 291 OCT C2 C N N 292 OCT C3 C N N 293 OCT C4 C N N 294 OCT C5 C N N 295 OCT C6 C N N 296 OCT C7 C N N 297 OCT C8 C N N 298 OCT H11 H N N 299 OCT H12 H N N 300 OCT H13 H N N 301 OCT H21 H N N 302 OCT H22 H N N 303 OCT H31 H N N 304 OCT H32 H N N 305 OCT H41 H N N 306 OCT H42 H N N 307 OCT H51 H N N 308 OCT H52 H N N 309 OCT H61 H N N 310 OCT H62 H N N 311 OCT H71 H N N 312 OCT H72 H N N 313 OCT H81 H N N 314 OCT H82 H N N 315 OCT H83 H N N 316 PHE N N N N 317 PHE CA C N S 318 PHE C C N N 319 PHE O O N N 320 PHE CB C N N 321 PHE CG C Y N 322 PHE CD1 C Y N 323 PHE CD2 C Y N 324 PHE CE1 C Y N 325 PHE CE2 C Y N 326 PHE CZ C Y N 327 PHE OXT O N N 328 PHE H H N N 329 PHE H2 H N N 330 PHE HA H N N 331 PHE HB2 H N N 332 PHE HB3 H N N 333 PHE HD1 H N N 334 PHE HD2 H N N 335 PHE HE1 H N N 336 PHE HE2 H N N 337 PHE HZ H N N 338 PHE HXT H N N 339 PRO N N N N 340 PRO CA C N S 341 PRO C C N N 342 PRO O O N N 343 PRO CB C N N 344 PRO CG C N N 345 PRO CD C N N 346 PRO OXT O N N 347 PRO H H N N 348 PRO HA H N N 349 PRO HB2 H N N 350 PRO HB3 H N N 351 PRO HG2 H N N 352 PRO HG3 H N N 353 PRO HD2 H N N 354 PRO HD3 H N N 355 PRO HXT H N N 356 SER N N N N 357 SER CA C N S 358 SER C C N N 359 SER O O N N 360 SER CB C N N 361 SER OG O N N 362 SER OXT O N N 363 SER H H N N 364 SER H2 H N N 365 SER HA H N N 366 SER HB2 H N N 367 SER HB3 H N N 368 SER HG H N N 369 SER HXT H N N 370 THR N N N N 371 THR CA C N S 372 THR C C N N 373 THR O O N N 374 THR CB C N R 375 THR OG1 O N N 376 THR CG2 C N N 377 THR OXT O N N 378 THR H H N N 379 THR H2 H N N 380 THR HA H N N 381 THR HB H N N 382 THR HG1 H N N 383 THR HG21 H N N 384 THR HG22 H N N 385 THR HG23 H N N 386 THR HXT H N N 387 TRP N N N N 388 TRP CA C N S 389 TRP C C N N 390 TRP O O N N 391 TRP CB C N N 392 TRP CG C Y N 393 TRP CD1 C Y N 394 TRP CD2 C Y N 395 TRP NE1 N Y N 396 TRP CE2 C Y N 397 TRP CE3 C Y N 398 TRP CZ2 C Y N 399 TRP CZ3 C Y N 400 TRP CH2 C Y N 401 TRP OXT O N N 402 TRP H H N N 403 TRP H2 H N N 404 TRP HA H N N 405 TRP HB2 H N N 406 TRP HB3 H N N 407 TRP HD1 H N N 408 TRP HE1 H N N 409 TRP HE3 H N N 410 TRP HZ2 H N N 411 TRP HZ3 H N N 412 TRP HH2 H N N 413 TRP HXT H N N 414 TYR N N N N 415 TYR CA C N S 416 TYR C C N N 417 TYR O O N N 418 TYR CB C N N 419 TYR CG C Y N 420 TYR CD1 C Y N 421 TYR CD2 C Y N 422 TYR CE1 C Y N 423 TYR CE2 C Y N 424 TYR CZ C Y N 425 TYR OH O N N 426 TYR OXT O N N 427 TYR H H N N 428 TYR H2 H N N 429 TYR HA H N N 430 TYR HB2 H N N 431 TYR HB3 H N N 432 TYR HD1 H N N 433 TYR HD2 H N N 434 TYR HE1 H N N 435 TYR HE2 H N N 436 TYR HH H N N 437 TYR HXT H N N 438 VAL N N N N 439 VAL CA C N S 440 VAL C C N N 441 VAL O O N N 442 VAL CB C N N 443 VAL CG1 C N N 444 VAL CG2 C N N 445 VAL OXT O N N 446 VAL H H N N 447 VAL H2 H N N 448 VAL HA H N N 449 VAL HB H N N 450 VAL HG11 H N N 451 VAL HG12 H N N 452 VAL HG13 H N N 453 VAL HG21 H N N 454 VAL HG22 H N N 455 VAL HG23 H N N 456 VAL HXT H N N 457 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 C8E C1 C2 sing N N 70 C8E C1 H11 sing N N 71 C8E C1 H12 sing N N 72 C8E C1 H13 sing N N 73 C8E C2 C3 sing N N 74 C8E C2 H21 sing N N 75 C8E C2 H22 sing N N 76 C8E C3 C4 sing N N 77 C8E C3 H31 sing N N 78 C8E C3 H32 sing N N 79 C8E C4 C5 sing N N 80 C8E C4 H41 sing N N 81 C8E C4 H42 sing N N 82 C8E C5 C6 sing N N 83 C8E C5 H51 sing N N 84 C8E C5 H52 sing N N 85 C8E C6 C7 sing N N 86 C8E C6 H61 sing N N 87 C8E C6 H62 sing N N 88 C8E C7 C8 sing N N 89 C8E C7 H71 sing N N 90 C8E C7 H72 sing N N 91 C8E C8 O9 sing N N 92 C8E C8 H81 sing N N 93 C8E C8 H82 sing N N 94 C8E O9 C10 sing N N 95 C8E C10 C11 sing N N 96 C8E C10 H101 sing N N 97 C8E C10 H102 sing N N 98 C8E C11 O12 sing N N 99 C8E C11 H111 sing N N 100 C8E C11 H112 sing N N 101 C8E O12 C13 sing N N 102 C8E C13 C14 sing N N 103 C8E C13 H131 sing N N 104 C8E C13 H132 sing N N 105 C8E C14 O15 sing N N 106 C8E C14 H141 sing N N 107 C8E C14 H142 sing N N 108 C8E O15 C16 sing N N 109 C8E C16 C17 sing N N 110 C8E C16 H161 sing N N 111 C8E C16 H162 sing N N 112 C8E C17 O18 sing N N 113 C8E C17 H171 sing N N 114 C8E C17 H172 sing N N 115 C8E O18 C19 sing N N 116 C8E C19 C20 sing N N 117 C8E C19 H191 sing N N 118 C8E C19 H192 sing N N 119 C8E C20 O21 sing N N 120 C8E C20 H201 sing N N 121 C8E C20 H202 sing N N 122 C8E O21 HO2 sing N N 123 GLN N CA sing N N 124 GLN N H sing N N 125 GLN N H2 sing N N 126 GLN CA C sing N N 127 GLN CA CB sing N N 128 GLN CA HA sing N N 129 GLN C O doub N N 130 GLN C OXT sing N N 131 GLN CB CG sing N N 132 GLN CB HB2 sing N N 133 GLN CB HB3 sing N N 134 GLN CG CD sing N N 135 GLN CG HG2 sing N N 136 GLN CG HG3 sing N N 137 GLN CD OE1 doub N N 138 GLN CD NE2 sing N N 139 GLN NE2 HE21 sing N N 140 GLN NE2 HE22 sing N N 141 GLN OXT HXT sing N N 142 GLU N CA sing N N 143 GLU N H sing N N 144 GLU N H2 sing N N 145 GLU CA C sing N N 146 GLU CA CB sing N N 147 GLU CA HA sing N N 148 GLU C O doub N N 149 GLU C OXT sing N N 150 GLU CB CG sing N N 151 GLU CB HB2 sing N N 152 GLU CB HB3 sing N N 153 GLU CG CD sing N N 154 GLU CG HG2 sing N N 155 GLU CG HG3 sing N N 156 GLU CD OE1 doub N N 157 GLU CD OE2 sing N N 158 GLU OE2 HE2 sing N N 159 GLU OXT HXT sing N N 160 GLY N CA sing N N 161 GLY N H sing N N 162 GLY N H2 sing N N 163 GLY CA C sing N N 164 GLY CA HA2 sing N N 165 GLY CA HA3 sing N N 166 GLY C O doub N N 167 GLY C OXT sing N N 168 GLY OXT HXT sing N N 169 HIS N CA sing N N 170 HIS N H sing N N 171 HIS N H2 sing N N 172 HIS CA C sing N N 173 HIS CA CB sing N N 174 HIS CA HA sing N N 175 HIS C O doub N N 176 HIS C OXT sing N N 177 HIS CB CG sing N N 178 HIS CB HB2 sing N N 179 HIS CB HB3 sing N N 180 HIS CG ND1 sing Y N 181 HIS CG CD2 doub Y N 182 HIS ND1 CE1 doub Y N 183 HIS ND1 HD1 sing N N 184 HIS CD2 NE2 sing Y N 185 HIS CD2 HD2 sing N N 186 HIS CE1 NE2 sing Y N 187 HIS CE1 HE1 sing N N 188 HIS NE2 HE2 sing N N 189 HIS OXT HXT sing N N 190 HOH O H1 sing N N 191 HOH O H2 sing N N 192 ILE N CA sing N N 193 ILE N H sing N N 194 ILE N H2 sing N N 195 ILE CA C sing N N 196 ILE CA CB sing N N 197 ILE CA HA sing N N 198 ILE C O doub N N 199 ILE C OXT sing N N 200 ILE CB CG1 sing N N 201 ILE CB CG2 sing N N 202 ILE CB HB sing N N 203 ILE CG1 CD1 sing N N 204 ILE CG1 HG12 sing N N 205 ILE CG1 HG13 sing N N 206 ILE CG2 HG21 sing N N 207 ILE CG2 HG22 sing N N 208 ILE CG2 HG23 sing N N 209 ILE CD1 HD11 sing N N 210 ILE CD1 HD12 sing N N 211 ILE CD1 HD13 sing N N 212 ILE OXT HXT sing N N 213 LEU N CA sing N N 214 LEU N H sing N N 215 LEU N H2 sing N N 216 LEU CA C sing N N 217 LEU CA CB sing N N 218 LEU CA HA sing N N 219 LEU C O doub N N 220 LEU C OXT sing N N 221 LEU CB CG sing N N 222 LEU CB HB2 sing N N 223 LEU CB HB3 sing N N 224 LEU CG CD1 sing N N 225 LEU CG CD2 sing N N 226 LEU CG HG sing N N 227 LEU CD1 HD11 sing N N 228 LEU CD1 HD12 sing N N 229 LEU CD1 HD13 sing N N 230 LEU CD2 HD21 sing N N 231 LEU CD2 HD22 sing N N 232 LEU CD2 HD23 sing N N 233 LEU OXT HXT sing N N 234 LYS N CA sing N N 235 LYS N H sing N N 236 LYS N H2 sing N N 237 LYS CA C sing N N 238 LYS CA CB sing N N 239 LYS CA HA sing N N 240 LYS C O doub N N 241 LYS C OXT sing N N 242 LYS CB CG sing N N 243 LYS CB HB2 sing N N 244 LYS CB HB3 sing N N 245 LYS CG CD sing N N 246 LYS CG HG2 sing N N 247 LYS CG HG3 sing N N 248 LYS CD CE sing N N 249 LYS CD HD2 sing N N 250 LYS CD HD3 sing N N 251 LYS CE NZ sing N N 252 LYS CE HE2 sing N N 253 LYS CE HE3 sing N N 254 LYS NZ HZ1 sing N N 255 LYS NZ HZ2 sing N N 256 LYS NZ HZ3 sing N N 257 LYS OXT HXT sing N N 258 MET N CA sing N N 259 MET N H sing N N 260 MET N H2 sing N N 261 MET CA C sing N N 262 MET CA CB sing N N 263 MET CA HA sing N N 264 MET C O doub N N 265 MET C OXT sing N N 266 MET CB CG sing N N 267 MET CB HB2 sing N N 268 MET CB HB3 sing N N 269 MET CG SD sing N N 270 MET CG HG2 sing N N 271 MET CG HG3 sing N N 272 MET SD CE sing N N 273 MET CE HE1 sing N N 274 MET CE HE2 sing N N 275 MET CE HE3 sing N N 276 MET OXT HXT sing N N 277 OCT C1 C2 sing N N 278 OCT C1 H11 sing N N 279 OCT C1 H12 sing N N 280 OCT C1 H13 sing N N 281 OCT C2 C3 sing N N 282 OCT C2 H21 sing N N 283 OCT C2 H22 sing N N 284 OCT C3 C4 sing N N 285 OCT C3 H31 sing N N 286 OCT C3 H32 sing N N 287 OCT C4 C5 sing N N 288 OCT C4 H41 sing N N 289 OCT C4 H42 sing N N 290 OCT C5 C6 sing N N 291 OCT C5 H51 sing N N 292 OCT C5 H52 sing N N 293 OCT C6 C7 sing N N 294 OCT C6 H61 sing N N 295 OCT C6 H62 sing N N 296 OCT C7 C8 sing N N 297 OCT C7 H71 sing N N 298 OCT C7 H72 sing N N 299 OCT C8 H81 sing N N 300 OCT C8 H82 sing N N 301 OCT C8 H83 sing N N 302 PHE N CA sing N N 303 PHE N H sing N N 304 PHE N H2 sing N N 305 PHE CA C sing N N 306 PHE CA CB sing N N 307 PHE CA HA sing N N 308 PHE C O doub N N 309 PHE C OXT sing N N 310 PHE CB CG sing N N 311 PHE CB HB2 sing N N 312 PHE CB HB3 sing N N 313 PHE CG CD1 doub Y N 314 PHE CG CD2 sing Y N 315 PHE CD1 CE1 sing Y N 316 PHE CD1 HD1 sing N N 317 PHE CD2 CE2 doub Y N 318 PHE CD2 HD2 sing N N 319 PHE CE1 CZ doub Y N 320 PHE CE1 HE1 sing N N 321 PHE CE2 CZ sing Y N 322 PHE CE2 HE2 sing N N 323 PHE CZ HZ sing N N 324 PHE OXT HXT sing N N 325 PRO N CA sing N N 326 PRO N CD sing N N 327 PRO N H sing N N 328 PRO CA C sing N N 329 PRO CA CB sing N N 330 PRO CA HA sing N N 331 PRO C O doub N N 332 PRO C OXT sing N N 333 PRO CB CG sing N N 334 PRO CB HB2 sing N N 335 PRO CB HB3 sing N N 336 PRO CG CD sing N N 337 PRO CG HG2 sing N N 338 PRO CG HG3 sing N N 339 PRO CD HD2 sing N N 340 PRO CD HD3 sing N N 341 PRO OXT HXT sing N N 342 SER N CA sing N N 343 SER N H sing N N 344 SER N H2 sing N N 345 SER CA C sing N N 346 SER CA CB sing N N 347 SER CA HA sing N N 348 SER C O doub N N 349 SER C OXT sing N N 350 SER CB OG sing N N 351 SER CB HB2 sing N N 352 SER CB HB3 sing N N 353 SER OG HG sing N N 354 SER OXT HXT sing N N 355 THR N CA sing N N 356 THR N H sing N N 357 THR N H2 sing N N 358 THR CA C sing N N 359 THR CA CB sing N N 360 THR CA HA sing N N 361 THR C O doub N N 362 THR C OXT sing N N 363 THR CB OG1 sing N N 364 THR CB CG2 sing N N 365 THR CB HB sing N N 366 THR OG1 HG1 sing N N 367 THR CG2 HG21 sing N N 368 THR CG2 HG22 sing N N 369 THR CG2 HG23 sing N N 370 THR OXT HXT sing N N 371 TRP N CA sing N N 372 TRP N H sing N N 373 TRP N H2 sing N N 374 TRP CA C sing N N 375 TRP CA CB sing N N 376 TRP CA HA sing N N 377 TRP C O doub N N 378 TRP C OXT sing N N 379 TRP CB CG sing N N 380 TRP CB HB2 sing N N 381 TRP CB HB3 sing N N 382 TRP CG CD1 doub Y N 383 TRP CG CD2 sing Y N 384 TRP CD1 NE1 sing Y N 385 TRP CD1 HD1 sing N N 386 TRP CD2 CE2 doub Y N 387 TRP CD2 CE3 sing Y N 388 TRP NE1 CE2 sing Y N 389 TRP NE1 HE1 sing N N 390 TRP CE2 CZ2 sing Y N 391 TRP CE3 CZ3 doub Y N 392 TRP CE3 HE3 sing N N 393 TRP CZ2 CH2 doub Y N 394 TRP CZ2 HZ2 sing N N 395 TRP CZ3 CH2 sing Y N 396 TRP CZ3 HZ3 sing N N 397 TRP CH2 HH2 sing N N 398 TRP OXT HXT sing N N 399 TYR N CA sing N N 400 TYR N H sing N N 401 TYR N H2 sing N N 402 TYR CA C sing N N 403 TYR CA CB sing N N 404 TYR CA HA sing N N 405 TYR C O doub N N 406 TYR C OXT sing N N 407 TYR CB CG sing N N 408 TYR CB HB2 sing N N 409 TYR CB HB3 sing N N 410 TYR CG CD1 doub Y N 411 TYR CG CD2 sing Y N 412 TYR CD1 CE1 sing Y N 413 TYR CD1 HD1 sing N N 414 TYR CD2 CE2 doub Y N 415 TYR CD2 HD2 sing N N 416 TYR CE1 CZ doub Y N 417 TYR CE1 HE1 sing N N 418 TYR CE2 CZ sing Y N 419 TYR CE2 HE2 sing N N 420 TYR CZ OH sing N N 421 TYR OH HH sing N N 422 TYR OXT HXT sing N N 423 VAL N CA sing N N 424 VAL N H sing N N 425 VAL N H2 sing N N 426 VAL CA C sing N N 427 VAL CA CB sing N N 428 VAL CA HA sing N N 429 VAL C O doub N N 430 VAL C OXT sing N N 431 VAL CB CG1 sing N N 432 VAL CB CG2 sing N N 433 VAL CB HB sing N N 434 VAL CG1 HG11 sing N N 435 VAL CG1 HG12 sing N N 436 VAL CG1 HG13 sing N N 437 VAL CG2 HG21 sing N N 438 VAL CG2 HG22 sing N N 439 VAL CG2 HG23 sing N N 440 VAL OXT HXT sing N N 441 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 N-OCTANE OCT 3 '(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE' C8E 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2WJQ _pdbx_initial_refinement_model.details ? #