HEADER OXIDOREDUCTASE, METAL BINDING PROTEIN 26-JUN-12 4FR2 TITLE ALCOHOL DEHYDROGENASE FROM OENOCOCCUS OENI COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1,3-PROPANEDIOL DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OENOCOCCUS OENI; SOURCE 3 ORGANISM_TAXID: 379360; SOURCE 4 ATCC: BAA-1163; SOURCE 5 GENE: DHAT, OENOO_49030; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSSMANN FOLD, OXIDOREDUCTASE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.FODOR,E.SKANDER,M.WILMANNS REVDAT 5 13-SEP-23 4FR2 1 REMARK SEQADV LINK REVDAT 4 09-OCT-13 4FR2 1 JRNL REVDAT 3 07-AUG-13 4FR2 1 JRNL REVDAT 2 24-JUL-13 4FR2 1 JRNL REVDAT 1 05-JUN-13 4FR2 0 JRNL AUTH S.ELLEUCHE,K.FODOR,B.KLIPPEL,A.VON DER HEYDE,M.WILMANNS, JRNL AUTH 2 G.ANTRANIKIAN JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERISATION OF A JRNL TITL 2 NAD(+)-DEPENDENT ALCOHOL DEHYDROGENASE FROM OENOCOCCUS OENI JRNL TITL 3 AS A NEW MODEL MOLECULE FOR INDUSTRIAL BIOTECHNOLOGY JRNL TITL 4 APPLICATIONS. JRNL REF APPL.MICROBIOL.BIOTECHNOL. V. 97 8963 2013 JRNL REFN ISSN 0175-7598 JRNL PMID 23385476 JRNL DOI 10.1007/S00253-013-4725-0 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.900 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 9935 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.281 REMARK 3 R VALUE (WORKING SET) : 0.279 REMARK 3 FREE R VALUE : 0.334 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 498 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 716 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4030 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.4980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2668 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.93000 REMARK 3 B22 (A**2) : 3.93000 REMARK 3 B33 (A**2) : -7.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.565 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.494 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.009 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.910 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2712 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3707 ; 1.191 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 382 ; 6.045 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;39.912 ;25.918 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 371 ;21.573 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;19.187 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 442 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2083 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1902 ; 0.391 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2977 ; 0.726 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 810 ; 0.636 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 730 ; 1.171 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4FR2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000073248. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.872600 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10505 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 76.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 59.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3BFJ CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES (PH 6.5), 16 % [W/W] REMARK 280 PEG20000, 10MM CACL2 IN THE DROPS, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.51400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.41250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.41250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 113.27100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.41250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.41250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.75700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.41250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.41250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 113.27100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.41250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.41250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.75700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 75.51400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 75.51400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 ARG A 4 REMARK 465 ASP A 388 REMARK 465 ALA A 389 REMARK 465 LYS A 390 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 6 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 7 CG OD1 OD2 REMARK 470 MET A 10 SD CE REMARK 470 VAL A 20 CG1 CG2 REMARK 470 LYS A 29 CE NZ REMARK 470 MET A 30 CG SD CE REMARK 470 PHE A 43 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 LEU A 47 CG CD1 CD2 REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 ASN A 49 CG OD1 ND2 REMARK 470 GLN A 54 CG CD OE1 NE2 REMARK 470 SER A 58 OG REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 ASP A 65 CG OD1 OD2 REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 ILE A 78 CG1 CG2 CD1 REMARK 470 HIS A 79 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 81 CG1 CG2 CD1 REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 VAL A 84 CG1 CG2 REMARK 470 THR A 86 OG1 CG2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 SER A 95 OG REMARK 470 THR A 107 OG1 CG2 REMARK 470 ILE A 114 CG1 CG2 CD1 REMARK 470 MET A 115 CG SD CE REMARK 470 ASP A 119 CG OD1 OD2 REMARK 470 ILE A 121 CG1 CG2 CD1 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 ILE A 156 CG1 CG2 CD1 REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 LEU A 163 CG CD1 CD2 REMARK 470 ARG A 171 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 172 CG OD1 ND2 REMARK 470 ILE A 173 CG1 CG2 CD1 REMARK 470 PHE A 178 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 HIS A 212 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 218 OG REMARK 470 GLN A 219 CG CD OE1 NE2 REMARK 470 CYS A 220 SG REMARK 470 SER A 229 OG REMARK 470 ASN A 237 CG OD1 ND2 REMARK 470 HIS A 239 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 248 CG1 CG2 REMARK 470 LEU A 287 CG CD1 CD2 REMARK 470 LEU A 307 CG CD1 CD2 REMARK 470 ARG A 309 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 310 CG1 CG2 CD1 REMARK 470 LEU A 326 CG CD1 CD2 REMARK 470 SER A 327 OG REMARK 470 LYS A 329 CG CD CE NZ REMARK 470 MET A 331 CG SD CE REMARK 470 LYS A 332 CG CD CE NZ REMARK 470 GLU A 336 CG CD OE1 OE2 REMARK 470 HIS A 342 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 343 OG REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 ILE A 347 CG1 CG2 CD1 REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 MET A 357 CG SD CE REMARK 470 THR A 375 OG1 CG2 REMARK 470 GLU A 377 CG CD OE1 OE2 REMARK 470 VAL A 380 CG1 CG2 REMARK 470 LYS A 381 CG CD CE NZ REMARK 470 GLN A 384 CG CD OE1 NE2 REMARK 470 GLU A 385 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 319 OD1 ASP A 322 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 42 -72.96 -66.77 REMARK 500 PHE A 43 -53.71 -26.86 REMARK 500 LYS A 48 39.20 -146.97 REMARK 500 ASN A 49 -81.14 -70.18 REMARK 500 ALA A 51 -150.10 55.84 REMARK 500 ASP A 65 -166.73 -74.80 REMARK 500 TYR A 66 141.70 -175.03 REMARK 500 ASN A 75 77.74 63.05 REMARK 500 ASP A 92 82.99 47.74 REMARK 500 ASP A 119 84.89 -64.15 REMARK 500 ASP A 120 87.14 -162.92 REMARK 500 PRO A 136 115.73 -30.93 REMARK 500 ALA A 144 70.78 -108.23 REMARK 500 ILE A 173 122.78 -38.13 REMARK 500 LYS A 189 -81.15 14.78 REMARK 500 THR A 216 -70.73 -49.16 REMARK 500 ALA A 236 -83.92 -77.63 REMARK 500 ASN A 240 105.41 -57.52 REMARK 500 ASN A 262 -156.88 -75.51 REMARK 500 GLN A 276 -1.20 -141.82 REMARK 500 TYR A 277 -5.29 -145.43 REMARK 500 GLU A 377 -72.81 -63.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 198 OD1 REMARK 620 2 GLN A 202 OE1 73.8 REMARK 620 3 HIS A 267 NE2 85.9 91.0 REMARK 620 4 HIS A 281 NE2 76.4 150.2 85.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 501 DBREF 4FR2 A 2 390 UNP A0NIJ1 A0NIJ1_OENOE 2 390 SEQADV 4FR2 MET A -10 UNP A0NIJ1 EXPRESSION TAG SEQADV 4FR2 ARG A -9 UNP A0NIJ1 EXPRESSION TAG SEQADV 4FR2 GLY A -8 UNP A0NIJ1 EXPRESSION TAG SEQADV 4FR2 SER A -7 UNP A0NIJ1 EXPRESSION TAG SEQADV 4FR2 HIS A -6 UNP A0NIJ1 EXPRESSION TAG SEQADV 4FR2 HIS A -5 UNP A0NIJ1 EXPRESSION TAG SEQADV 4FR2 HIS A -4 UNP A0NIJ1 EXPRESSION TAG SEQADV 4FR2 HIS A -3 UNP A0NIJ1 EXPRESSION TAG SEQADV 4FR2 HIS A -2 UNP A0NIJ1 EXPRESSION TAG SEQADV 4FR2 HIS A -1 UNP A0NIJ1 EXPRESSION TAG SEQADV 4FR2 GLY A 0 UNP A0NIJ1 EXPRESSION TAG SEQADV 4FR2 SER A 1 UNP A0NIJ1 EXPRESSION TAG SEQRES 1 A 401 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 A 401 GLU ARG ALA TYR ASP PHE LEU MET PRO SER VAL ASN PHE SEQRES 3 A 401 PHE GLY PRO GLY VAL ILE SER LYS ILE GLY GLU ARG ALA SEQRES 4 A 401 LYS MET LEU GLY MET LYS LYS PRO VAL ILE VAL THR ASP SEQRES 5 A 401 LYS PHE LEU GLU ASN LEU LYS ASN GLY ALA VAL ALA GLN SEQRES 6 A 401 THR LEU ALA SER LEU LYS LYS SER GLY VAL ASP TYR VAL SEQRES 7 A 401 VAL TYR ASN GLY VAL GLU PRO ASN PRO LYS ILE HIS ASN SEQRES 8 A 401 ILE LYS GLU VAL LYS THR LEU TYR GLU LYS GLU ASP ALA SEQRES 9 A 401 ASP SER ILE ILE THR VAL GLY GLY GLY SER ALA HIS ASP SEQRES 10 A 401 THR GLY LYS GLY ALA GLY ILE ILE MET THR ASN GLY ASP SEQRES 11 A 401 ASP ILE THR LYS LEU ALA GLY ILE GLU THR LEU LYS ASN SEQRES 12 A 401 PRO LEU PRO PRO LEU ILE ALA VAL ASN THR THR ALA GLY SEQRES 13 A 401 THR GLY SER GLU LEU THR ARG HIS ALA VAL ILE THR ASN SEQRES 14 A 401 GLU GLU THR HIS LEU LYS PHE VAL VAL VAL SER TRP ARG SEQRES 15 A 401 ASN ILE PRO LEU VAL SER PHE ASN ASP PRO THR LEU MET SEQRES 16 A 401 LEU ASP ILE PRO LYS GLY LEU THR ALA ALA THR GLY MET SEQRES 17 A 401 ASP ALA PHE VAL GLN ALA VAL GLU PRO TYR VAL SER VAL SEQRES 18 A 401 ASP HIS ASN PRO ILE THR ASP SER GLN CYS ILE GLN ALA SEQRES 19 A 401 ILE LYS LEU ILE GLU SER SER LEU ARG GLU ALA VAL ALA SEQRES 20 A 401 ASN GLY HIS ASN LEU GLN ALA ARG THR LYS MET VAL GLU SEQRES 21 A 401 ALA GLU MET LEU ALA GLY MET ALA PHE ASN ASN ALA ASN SEQRES 22 A 401 LEU GLY TYR VAL HIS ALA MET ALA HIS GLN LEU GLY GLY SEQRES 23 A 401 GLN TYR ASP ALA PRO HIS GLY VAL CYS CYS ALA LEU LEU SEQRES 24 A 401 LEU PRO TYR ALA GLU GLU TYR ASN LEU ILE ALA ASP PRO SEQRES 25 A 401 GLU ARG PHE ALA GLU LEU ALA ARG ILE MET GLY GLU ASN SEQRES 26 A 401 THR ASP GLY LEU SER THR ARG ASP ALA ALA GLU LEU SER SEQRES 27 A 401 ILE LYS ALA MET LYS GLN LEU SER GLU ASP VAL GLY ILE SEQRES 28 A 401 PRO HIS SER ILE LYS ASP ILE GLY ALA LYS PRO GLU ASP SEQRES 29 A 401 PHE ASP LEU MET ALA GLU ASN ALA LEU LYS ASP GLY ASN SEQRES 30 A 401 ALA PHE SER ASN PRO ARG LYS GLY THR LYS GLU ASP ILE SEQRES 31 A 401 VAL LYS ILE PHE GLN GLU ALA TYR ASP ALA LYS HET NI A 501 1 HETNAM NI NICKEL (II) ION FORMUL 2 NI NI 2+ HELIX 1 1 GLY A 19 MET A 30 1 12 HELIX 2 2 ASP A 41 LEU A 47 1 7 HELIX 3 3 VAL A 52 SER A 62 1 11 HELIX 4 4 LYS A 77 LYS A 90 1 14 HELIX 5 5 GLY A 101 MET A 115 1 15 HELIX 6 6 SER A 169 ILE A 173 5 5 HELIX 7 7 ASP A 180 LEU A 185 5 6 HELIX 8 8 LYS A 189 VAL A 208 1 20 HELIX 9 9 ASN A 213 ASN A 237 1 25 HELIX 10 10 ASN A 240 ALA A 261 1 22 HELIX 11 11 GLY A 264 GLY A 275 1 12 HELIX 12 12 PRO A 280 LEU A 287 1 8 HELIX 13 13 LEU A 288 LEU A 297 1 10 HELIX 14 14 ARG A 303 MET A 311 1 9 HELIX 15 15 SER A 319 VAL A 338 1 20 HELIX 16 16 SER A 343 GLY A 348 1 6 HELIX 17 17 LYS A 350 GLU A 352 5 3 HELIX 18 18 ASP A 353 ASN A 360 1 8 HELIX 19 19 ASP A 364 ASN A 370 5 7 HELIX 20 20 THR A 375 TYR A 387 1 13 SHEET 1 A 6 VAL A 13 PHE A 16 0 SHEET 2 A 6 VAL A 176 ASN A 179 1 O SER A 177 N PHE A 15 SHEET 3 A 6 LEU A 137 ASN A 141 1 N ALA A 139 O PHE A 178 SHEET 4 A 6 ILE A 96 GLY A 100 1 N ILE A 96 O ILE A 138 SHEET 5 A 6 VAL A 37 VAL A 39 1 N VAL A 37 O ILE A 97 SHEET 6 A 6 VAL A 67 TYR A 69 1 O VAL A 67 N ILE A 38 SHEET 1 B 3 GLY A 126 ILE A 127 0 SHEET 2 B 3 LEU A 163 VAL A 168 1 O VAL A 166 N GLY A 126 SHEET 3 B 3 ALA A 154 ASN A 158 -1 N ALA A 154 O VAL A 167 LINK OD1 ASP A 198 NI NI A 501 1555 1555 2.63 LINK OE1 GLN A 202 NI NI A 501 1555 1555 1.84 LINK NE2 HIS A 267 NI NI A 501 1555 1555 2.23 LINK NE2 HIS A 281 NI NI A 501 1555 1555 2.46 SITE 1 AC1 4 ASP A 198 GLN A 202 HIS A 267 HIS A 281 CRYST1 88.825 88.825 151.028 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011258 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011258 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006621 0.00000