HEADER HYDROLASE 26-JUN-12 4FR7 TITLE CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM-31 IN ITS REDUCED TITLE 2 FORM AT 1.61 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE VIM-31; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 31-266; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER CLOACAE; SOURCE 3 ORGANISM_TAXID: 550; SOURCE 4 STRAIN: 11236; SOURCE 5 GENE: BLAVIM-31; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS METALLO-BETA-LACTAMASE SUPERFAMILY, BETA-LACTAM HYDROLYZING ENZYME, KEYWDS 2 ZINC BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.HERZOG,K.M.HOFFMANN REVDAT 6 06-DEC-23 4FR7 1 REMARK REVDAT 5 13-SEP-23 4FR7 1 REMARK SEQADV LINK REVDAT 4 01-JUL-15 4FR7 1 JRNL REVDAT 3 22-APR-15 4FR7 1 JRNL REVDAT 2 15-APR-15 4FR7 1 JRNL REVDAT 1 26-JUN-13 4FR7 0 JRNL AUTH M.B.KUPPER,K.HERZOG,S.BENNINK,P.SCHLOMER,P.BOGAERTS, JRNL AUTH 2 Y.GLUPCZYNSKI,R.FISCHER,C.BEBRONE,K.M.HOFFMANN JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF VIM-31 - A JRNL TITL 2 METALLO-BETA-LACTAMASE FROM ENTEROBACTER CLOACAE IN ITS JRNL TITL 3 NATIVE AND OXIDIZED FORM. JRNL REF FEBS J. V. 282 2352 2015 JRNL REFN ISSN 1742-464X JRNL PMID 25825035 JRNL DOI 10.1111/FEBS.13283 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 24650 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1257 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1599 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1734 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.83000 REMARK 3 B22 (A**2) : -0.50000 REMARK 3 B33 (A**2) : -6.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.019 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.019 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.823 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1837 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1169 ; 0.014 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2522 ; 1.312 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2860 ; 0.856 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 243 ; 6.450 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;33.832 ;23.797 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 262 ;12.302 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.540 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 289 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2133 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 372 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 52 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3640 33.0950 3.5730 REMARK 3 T TENSOR REMARK 3 T11: 0.1446 T22: 0.1196 REMARK 3 T33: 0.1364 T12: -0.0116 REMARK 3 T13: 0.0064 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 5.2769 L22: 2.1071 REMARK 3 L33: 5.1330 L12: 0.3717 REMARK 3 L13: -0.4532 L23: -1.5362 REMARK 3 S TENSOR REMARK 3 S11: 0.0092 S12: 0.6570 S13: 0.5792 REMARK 3 S21: -0.2714 S22: 0.0695 S23: 0.0730 REMARK 3 S31: -0.1186 S32: 0.1564 S33: -0.0788 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3050 26.3550 7.3620 REMARK 3 T TENSOR REMARK 3 T11: 0.0284 T22: 0.0265 REMARK 3 T33: 0.0585 T12: 0.0025 REMARK 3 T13: 0.0060 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 9.6222 L22: 1.5441 REMARK 3 L33: 3.8470 L12: -0.5289 REMARK 3 L13: -3.7851 L23: 0.2403 REMARK 3 S TENSOR REMARK 3 S11: 0.0629 S12: 0.1845 S13: -0.1703 REMARK 3 S21: -0.0842 S22: -0.0727 S23: -0.1179 REMARK 3 S31: 0.0649 S32: 0.0974 S33: 0.0099 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): 19.289 28.409 16.235 REMARK 3 T TENSOR REMARK 3 T11: 0.0302 T22: 0.0228 REMARK 3 T33: 0.0351 T12: -0.0038 REMARK 3 T13: 0.0068 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 9.7948 L22: 2.2785 REMARK 3 L33: 1.8747 L12: -0.1883 REMARK 3 L13: -1.1891 L23: 0.1478 REMARK 3 S TENSOR REMARK 3 S11: 0.0756 S12: 0.0619 S13: 0.4487 REMARK 3 S21: 0.1079 S22: 0.0034 S23: 0.1039 REMARK 3 S31: -0.1926 S32: -0.0459 S33: -0.0790 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5430 19.2870 16.7410 REMARK 3 T TENSOR REMARK 3 T11: 0.0029 T22: 0.0292 REMARK 3 T33: 0.0520 T12: -0.0032 REMARK 3 T13: 0.0017 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.9324 L22: 1.5671 REMARK 3 L33: 1.3950 L12: -0.2130 REMARK 3 L13: -0.1707 L23: 0.4900 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: 0.0086 S13: -0.0346 REMARK 3 S21: 0.0565 S22: -0.0064 S23: 0.0493 REMARK 3 S31: 0.0178 S32: -0.0310 S33: -0.0065 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): 20.366 7.061 3.840 REMARK 3 T TENSOR REMARK 3 T11: 0.0963 T22: 0.0631 REMARK 3 T33: 0.1707 T12: -0.0241 REMARK 3 T13: 0.0164 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 2.2870 L22: 2.4393 REMARK 3 L33: 5.0686 L12: -2.3461 REMARK 3 L13: 2.2804 L23: -2.6088 REMARK 3 S TENSOR REMARK 3 S11: -0.1255 S12: 0.0976 S13: 0.2469 REMARK 3 S21: 0.1021 S22: -0.1239 S23: -0.2848 REMARK 3 S31: -0.1027 S32: 0.3070 S33: 0.2494 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 225 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): 9.774 17.487 2.307 REMARK 3 T TENSOR REMARK 3 T11: 0.0502 T22: 0.1563 REMARK 3 T33: 0.0726 T12: -0.0078 REMARK 3 T13: -0.0264 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 4.7106 L22: 5.3213 REMARK 3 L33: 2.3300 L12: 2.8581 REMARK 3 L13: -0.9755 L23: -0.1668 REMARK 3 S TENSOR REMARK 3 S11: 0.0552 S12: 0.2460 S13: -0.0603 REMARK 3 S21: -0.1622 S22: -0.0704 S23: 0.2500 REMARK 3 S31: 0.0530 S32: -0.4838 S33: 0.0152 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 243 A 260 REMARK 3 ORIGIN FOR THE GROUP (A): 18.874 9.520 -4.070 REMARK 3 T TENSOR REMARK 3 T11: 0.0377 T22: 0.0580 REMARK 3 T33: 0.0240 T12: -0.0170 REMARK 3 T13: 0.0022 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 3.8596 L22: 9.1722 REMARK 3 L33: 3.5451 L12: -2.4612 REMARK 3 L13: -0.5538 L23: 1.5012 REMARK 3 S TENSOR REMARK 3 S11: -0.0199 S12: -0.0395 S13: -0.2560 REMARK 3 S21: -0.0814 S22: 0.0539 S23: -0.0506 REMARK 3 S31: 0.0761 S32: -0.0627 S33: -0.0340 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4FR7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073253. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24650 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 54.068 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.40400 REMARK 200 R SYM FOR SHELL (I) : 0.40400 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1KO3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VIM-31 (17 MG/ML) 1:1 DILUTION WITH REMARK 280 THE CONDITION 0.3 M SODIUM ACETATE, 0.1 M TRIS-HCL PH 8.5, 20 % REMARK 280 PEG4000 1.0 MM TCEP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.30000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.19500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.36000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.30000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.19500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.36000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.30000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.19500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.36000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.30000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.19500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 39.36000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 584 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 261 REMARK 465 VAL A 262 REMARK 465 VAL A 263 REMARK 465 GLU A 264 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 LYS A 88 CE NZ REMARK 470 GLN A 226 OE1 NE2 REMARK 470 ARG A 260 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 521 O HOH A 608 1.56 REMARK 500 O HOH A 528 O HOH A 535 1.68 REMARK 500 O HOH A 447 O HOH A 561 1.68 REMARK 500 O HOH A 452 O HOH A 528 1.75 REMARK 500 O HOH A 452 O HOH A 511 1.77 REMARK 500 NH1 ARG A 223 O HOH A 518 1.78 REMARK 500 OD1 ASP A 245 O HOH A 489 1.80 REMARK 500 OD1 ASP A 245 O HOH A 609 1.82 REMARK 500 O HOH A 452 O HOH A 608 1.89 REMARK 500 O HOH A 445 O HOH A 512 2.02 REMARK 500 O HOH A 497 O HOH A 611 2.02 REMARK 500 O HOH A 528 O HOH A 608 2.04 REMARK 500 O HOH A 560 O HOH A 590 2.06 REMARK 500 O HOH A 543 O HOH A 613 2.08 REMARK 500 OE1 GLU A 216 O HOH A 518 2.08 REMARK 500 O HOH A 434 O HOH A 549 2.11 REMARK 500 O HOH A 571 O HOH A 581 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 30 96.27 47.86 REMARK 500 ASP A 82 147.78 77.97 REMARK 500 TRP A 85 71.84 67.15 REMARK 500 ALA A 176 -104.00 -154.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 112 NE2 REMARK 620 2 HIS A 114 ND1 97.2 REMARK 620 3 HIS A 177 NE2 102.5 110.5 REMARK 620 4 HOH A 521 O 106.6 119.6 116.8 REMARK 620 5 HOH A 608 O 124.4 83.7 129.3 37.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 116 OD2 REMARK 620 2 OCS A 196 SG 105.8 REMARK 620 3 OCS A 196 OD1 121.7 40.5 REMARK 620 4 HIS A 238 NE2 92.7 102.3 65.3 REMARK 620 5 HOH A 512 O 152.7 101.0 82.4 86.0 REMARK 620 6 HOH A 521 O 74.8 116.6 151.8 141.1 89.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FSB RELATED DB: PDB DBREF 4FR7 A 29 264 UNP Q7BI22 Q7BI22_ENTCL 31 266 SEQADV 4FR7 HIS A 199 UNP Q7BI22 TYR 201 ENGINEERED MUTATION SEQADV 4FR7 ARG A 227 UNP Q7BI22 HIS 229 ENGINEERED MUTATION SEQRES 1 A 236 GLY GLU TYR PRO THR VAL SER GLU ILE PRO VAL GLY GLU SEQRES 2 A 236 VAL ARG LEU TYR GLN ILE ALA ASP GLY VAL TRP SER HIS SEQRES 3 A 236 ILE ALA THR GLN SER PHE ASP GLY ALA VAL TYR PRO SER SEQRES 4 A 236 ASN GLY LEU ILE VAL ARG ASP GLY ASP GLU LEU LEU LEU SEQRES 5 A 236 ILE ASP THR ALA TRP GLY ALA LYS ASN THR ALA ALA LEU SEQRES 6 A 236 LEU ALA GLU ILE GLU LYS GLN ILE GLY LEU PRO VAL THR SEQRES 7 A 236 ARG ALA VAL SER THR HIS PHE HIS ASP ASP ARG VAL GLY SEQRES 8 A 236 GLY VAL ASP VAL LEU ARG ALA ALA GLY VAL ALA THR TYR SEQRES 9 A 236 ALA SER PRO SER THR ARG ARG LEU ALA GLU VAL GLU GLY SEQRES 10 A 236 ASN GLU ILE PRO THR HIS SER LEU GLU GLY LEU SER SER SEQRES 11 A 236 SER GLY ASP ALA VAL ARG PHE GLY PRO VAL GLU LEU PHE SEQRES 12 A 236 TYR PRO GLY ALA ALA HIS SER THR ASP ASN LEU VAL VAL SEQRES 13 A 236 TYR VAL PRO SER ALA SER VAL LEU TYR GLY GLY OCS ALA SEQRES 14 A 236 ILE HIS GLU LEU SER ARG THR SER ALA GLY ASN VAL ALA SEQRES 15 A 236 ASP ALA ASP LEU ALA GLU TRP PRO THR SER ILE GLU ARG SEQRES 16 A 236 ILE GLN GLN ARG TYR PRO GLU ALA GLN PHE VAL ILE PRO SEQRES 17 A 236 GLY HIS GLY LEU PRO GLY GLY LEU ASP LEU LEU LYS HIS SEQRES 18 A 236 THR THR ASN VAL VAL LYS ALA HIS THR ASN ARG SER VAL SEQRES 19 A 236 VAL GLU MODRES 4FR7 OCS A 196 CYS CYSTEINESULFONIC ACID HET OCS A 196 8 HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET ACT A 304 4 HET ACT A 305 4 HET CL A 306 1 HETNAM OCS CYSTEINESULFONIC ACID HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION FORMUL 1 OCS C3 H7 N O5 S FORMUL 2 ZN 3(ZN 2+) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 CL CL 1- FORMUL 8 HOH *215(H2 O) HELIX 1 1 THR A 33 ILE A 37 5 5 HELIX 2 2 GLY A 86 ILE A 101 1 16 HELIX 3 3 HIS A 114 GLY A 119 1 6 HELIX 4 4 GLY A 120 ALA A 127 1 8 HELIX 5 5 SER A 134 GLY A 145 1 12 HELIX 6 6 OCS A 196 ILE A 198 5 3 HELIX 7 7 GLU A 216 TYR A 228 1 13 HELIX 8 8 LEU A 244 ASN A 259 1 16 SHEET 1 A 7 ARG A 43 ALA A 48 0 SHEET 2 A 7 VAL A 51 PHE A 60 -1 O ILE A 55 N ARG A 43 SHEET 3 A 7 ALA A 63 ASP A 74 -1 O ALA A 63 N PHE A 60 SHEET 4 A 7 GLU A 77 ILE A 81 -1 O GLU A 77 N ASP A 74 SHEET 5 A 7 VAL A 105 VAL A 109 1 O ARG A 107 N LEU A 80 SHEET 6 A 7 ALA A 130 ALA A 133 1 O ALA A 130 N ALA A 108 SHEET 7 A 7 HIS A 151 SER A 152 1 O HIS A 151 N THR A 131 SHEET 1 B 5 ALA A 162 PHE A 165 0 SHEET 2 B 5 VAL A 168 PHE A 171 -1 O LEU A 170 N VAL A 163 SHEET 3 B 5 VAL A 183 VAL A 186 -1 O TYR A 185 N GLU A 169 SHEET 4 B 5 VAL A 191 GLY A 195 -1 O TYR A 193 N VAL A 184 SHEET 5 B 5 PHE A 233 PRO A 236 1 O ILE A 235 N GLY A 194 LINK C GLY A 195 N OCS A 196 1555 1555 1.31 LINK C OCS A 196 N ALA A 197 1555 1555 1.33 LINK NE2 HIS A 112 ZN ZN A 302 1555 1555 2.08 LINK ND1 HIS A 114 ZN ZN A 302 1555 1555 1.92 LINK OD2 ASP A 116 ZN ZN A 303 1555 1555 2.29 LINK NE2 HIS A 177 ZN ZN A 302 1555 1555 2.02 LINK SG OCS A 196 ZN ZN A 303 1555 1555 2.04 LINK OD1 OCS A 196 ZN ZN A 303 1555 1555 2.10 LINK NE2 HIS A 238 ZN ZN A 303 1555 1555 2.18 LINK ND1 HIS A 249 ZN ZN A 301 1555 1555 2.06 LINK ZN ZN A 302 O HOH A 521 1555 1555 2.04 LINK ZN ZN A 302 O HOH A 608 1555 1555 2.59 LINK ZN ZN A 303 O HOH A 512 1555 1555 2.26 LINK ZN ZN A 303 O HOH A 521 1555 1555 2.21 SITE 1 AC1 4 HIS A 151 HIS A 249 ACT A 304 ACT A 305 SITE 1 AC2 6 HIS A 112 HIS A 114 HIS A 177 HOH A 511 SITE 2 AC2 6 HOH A 521 HOH A 608 SITE 1 AC3 5 ASP A 116 OCS A 196 HIS A 238 HOH A 512 SITE 2 AC3 5 HOH A 521 SITE 1 AC4 8 ALA A 130 THR A 131 THR A 150 HIS A 151 SITE 2 AC4 8 HIS A 249 ZN A 301 ACT A 305 HOH A 404 SITE 1 AC5 7 ALA A 130 HIS A 151 HIS A 249 ASN A 252 SITE 2 AC5 7 ZN A 301 ACT A 304 HOH A 477 SITE 1 AC6 1 ARG A 139 CRYST1 64.600 74.390 78.720 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015480 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013443 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012703 0.00000