data_4FR9 # _entry.id 4FR9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4FR9 pdb_00004fr9 10.2210/pdb4fr9/pdb RCSB RCSB073255 ? ? WWPDB D_1000073255 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-390098 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4FR9 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-06-26 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (BF1215) from Bacteroides fragilis NCTC 9343 at 1.20 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4FR9 _cell.length_a 35.879 _cell.length_b 36.977 _cell.length_c 115.061 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4FR9 _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 16497.873 1 ? ? 'UNP residues 24-166' ? 2 water nat water 18.015 188 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GGDDDDTGYLPPSQAIQDAL(MLY)(MLY)LYPNATAI(MLY)WEQ(MLY)GVYYVADCQADGRE(MLY)EVWFDANANW L(MSE)TETELNSINNLPPAVLTAF(MSE)ESSYNNWVVDDVVILEYPNEPSTEFVVTVEQG(MLY)(MLY)VDLYFSEG GGLLHE(MLY)DVTNGDDTHWPRV ; _entity_poly.pdbx_seq_one_letter_code_can ;GGDDDDTGYLPPSQAIQDALKKLYPNATAIKWEQKGVYYVADCQADGREKEVWFDANANWLMTETELNSINNLPPAVLTA FMESSYNNWVVDDVVILEYPNEPSTEFVVTVEQGKKVDLYFSEGGGLLHEKDVTNGDDTHWPRV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-390098 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 ASP n 1 4 ASP n 1 5 ASP n 1 6 ASP n 1 7 THR n 1 8 GLY n 1 9 TYR n 1 10 LEU n 1 11 PRO n 1 12 PRO n 1 13 SER n 1 14 GLN n 1 15 ALA n 1 16 ILE n 1 17 GLN n 1 18 ASP n 1 19 ALA n 1 20 LEU n 1 21 MLY n 1 22 MLY n 1 23 LEU n 1 24 TYR n 1 25 PRO n 1 26 ASN n 1 27 ALA n 1 28 THR n 1 29 ALA n 1 30 ILE n 1 31 MLY n 1 32 TRP n 1 33 GLU n 1 34 GLN n 1 35 MLY n 1 36 GLY n 1 37 VAL n 1 38 TYR n 1 39 TYR n 1 40 VAL n 1 41 ALA n 1 42 ASP n 1 43 CYS n 1 44 GLN n 1 45 ALA n 1 46 ASP n 1 47 GLY n 1 48 ARG n 1 49 GLU n 1 50 MLY n 1 51 GLU n 1 52 VAL n 1 53 TRP n 1 54 PHE n 1 55 ASP n 1 56 ALA n 1 57 ASN n 1 58 ALA n 1 59 ASN n 1 60 TRP n 1 61 LEU n 1 62 MSE n 1 63 THR n 1 64 GLU n 1 65 THR n 1 66 GLU n 1 67 LEU n 1 68 ASN n 1 69 SER n 1 70 ILE n 1 71 ASN n 1 72 ASN n 1 73 LEU n 1 74 PRO n 1 75 PRO n 1 76 ALA n 1 77 VAL n 1 78 LEU n 1 79 THR n 1 80 ALA n 1 81 PHE n 1 82 MSE n 1 83 GLU n 1 84 SER n 1 85 SER n 1 86 TYR n 1 87 ASN n 1 88 ASN n 1 89 TRP n 1 90 VAL n 1 91 VAL n 1 92 ASP n 1 93 ASP n 1 94 VAL n 1 95 VAL n 1 96 ILE n 1 97 LEU n 1 98 GLU n 1 99 TYR n 1 100 PRO n 1 101 ASN n 1 102 GLU n 1 103 PRO n 1 104 SER n 1 105 THR n 1 106 GLU n 1 107 PHE n 1 108 VAL n 1 109 VAL n 1 110 THR n 1 111 VAL n 1 112 GLU n 1 113 GLN n 1 114 GLY n 1 115 MLY n 1 116 MLY n 1 117 VAL n 1 118 ASP n 1 119 LEU n 1 120 TYR n 1 121 PHE n 1 122 SER n 1 123 GLU n 1 124 GLY n 1 125 GLY n 1 126 GLY n 1 127 LEU n 1 128 LEU n 1 129 HIS n 1 130 GLU n 1 131 MLY n 1 132 ASP n 1 133 VAL n 1 134 THR n 1 135 ASN n 1 136 GLY n 1 137 ASP n 1 138 ASP n 1 139 THR n 1 140 HIS n 1 141 TRP n 1 142 PRO n 1 143 ARG n 1 144 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BF1215, BF9343_1154' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 25285 / NCTC 9343' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides fragilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272559 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5LG06_BACFN _struct_ref.pdbx_db_accession Q5LG06 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GDDDDTGYLPPSQAIQDALKKLYPNATAIKWEQKGVYYVADCQADGREKEVWFDANANWLMTETELNSINNLPPAVLTAF MESSYNNWVVDDVVILEYPNEPSTEFVVTVEQGKKVDLYFSEGGGLLHEKDVTNGDDTHWPRV ; _struct_ref.pdbx_align_begin 24 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4FR9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 144 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5LG06 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 166 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 24 _struct_ref_seq.pdbx_auth_seq_align_end 166 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4FR9 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q5LG06 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4FR9 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.83 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '2.00M ammonium sulfate, 0.1M TRIS pH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Vertical focusing mirror; double crystal Si(111) monochromator' _diffrn_detector.pdbx_collection_date 2012-04-10 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97919 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL14-1 _diffrn_source.type 'SSRL BEAMLINE BL14-1' _diffrn_source.pdbx_wavelength 0.97919 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4FR9 _reflns.d_resolution_high 1.20 _reflns.d_resolution_low 115.061 _reflns.number_all 48774 _reflns.number_obs 48774 _reflns.pdbx_netI_over_sigmaI 13.000 _reflns.pdbx_Rsym_value 0.046 _reflns.pdbx_redundancy 5.100 _reflns.percent_possible_obs 99.800 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate 17.008 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.200 1.230 ? 13866 ? 0.725 1.400 0.725 ? 4.000 ? 3484 99.100 1 1 1.230 1.260 ? 16184 ? 0.526 1.4 0.526 ? 4.700 ? 3449 99.800 2 1 1.260 1.300 ? 15874 ? 0.383 1.9 0.383 ? 4.700 ? 3376 99.800 3 1 1.300 1.340 ? 15376 ? 0.302 2.4 0.302 ? 4.700 ? 3267 99.900 4 1 1.340 1.390 ? 15240 ? 0.240 2.7 0.240 ? 4.700 ? 3219 100.000 5 1 1.390 1.430 ? 14675 ? 0.194 3.8 0.194 ? 4.700 ? 3092 100.000 6 1 1.430 1.490 ? 14062 ? 0.144 5.0 0.144 ? 4.800 ? 2952 100.000 7 1 1.490 1.550 ? 13767 ? 0.108 6.5 0.108 ? 4.800 ? 2879 100.000 8 1 1.550 1.620 ? 13265 ? 0.078 8.8 0.078 ? 4.800 ? 2773 100.000 9 1 1.620 1.700 ? 12639 ? 0.067 10.3 0.067 ? 4.800 ? 2634 100.000 10 1 1.700 1.790 ? 12168 ? 0.058 11.1 0.058 ? 4.800 ? 2538 100.000 11 1 1.790 1.900 ? 11469 ? 0.053 11.5 0.053 ? 4.800 ? 2382 100.000 12 1 1.900 2.030 ? 10851 ? 0.050 11.7 0.050 ? 4.800 ? 2254 100.000 13 1 2.030 2.190 ? 10170 ? 0.040 14.1 0.040 ? 4.800 ? 2108 100.000 14 1 2.190 2.400 ? 10824 ? 0.041 13.8 0.041 ? 5.500 ? 1959 100.000 15 1 2.400 2.680 ? 13786 ? 0.049 12.3 0.049 ? 7.700 ? 1783 100.000 16 1 2.680 3.100 ? 13095 ? 0.047 12.9 0.047 ? 8.300 ? 1587 100.000 17 1 3.100 3.790 ? 9932 ? 0.044 14.2 0.044 ? 7.400 ? 1344 99.500 18 1 3.790 5.370 ? 6276 ? 0.034 16.8 0.034 ? 5.900 ? 1069 99.100 19 1 5.370 115.061 ? 3387 ? 0.033 18.9 0.033 ? 5.400 ? 625 95.500 20 1 # _refine.entry_id 4FR9 _refine.ls_d_res_high 1.2000 _refine.ls_d_res_low 115.061 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.6800 _refine.ls_number_reflns_obs 48663 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2.THE PROTEIN WAS SUBJECTED TO REDUCTIVE METHYLATION PRIOR TO CRYSTALLIZATION AND LYSINES HAVE BEEN MODELED AS N-DIMETHYL-LYSINE (MLY). 3. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1470 _refine.ls_R_factor_R_work 0.1458 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1717 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 2461 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 25.6264 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.5200 _refine.aniso_B[2][2] 0.3500 _refine.aniso_B[3][3] -0.8700 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9780 _refine.correlation_coeff_Fo_to_Fc_free 0.9700 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0360 _refine.pdbx_overall_ESU_R_Free 0.0360 _refine.overall_SU_ML 0.0240 _refine.overall_SU_B 1.2000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 64.120 _refine.B_iso_min 13.290 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.250 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1114 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 188 _refine_hist.number_atoms_total 1302 _refine_hist.d_res_high 1.2000 _refine_hist.d_res_low 115.061 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1240 0.013 0.022 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 772 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1728 1.482 1.948 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 1921 0.950 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 169 6.183 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 67 38.686 26.567 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 191 11.167 15.105 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 2 19.080 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 192 0.099 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1444 0.009 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 233 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 751 2.700 3.000 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 296 2.250 3.000 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1235 3.986 5.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 489 4.609 8.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 478 6.633 11.000 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 2012 2.045 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 198 9.226 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 1965 5.987 3.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.2000 _refine_ls_shell.d_res_low 1.2310 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.6900 _refine_ls_shell.number_reflns_R_work 3292 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3280 _refine_ls_shell.R_factor_R_free 0.3530 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 180 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 3472 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a BLIP-like protein (BF1215) from Bacteroides fragilis NCTC 9343 at 1.20 A resolution' _struct.entry_id 4FR9 _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.text ;BLIP-like, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 4FR9 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 4 ? GLY A 8 ? ASP A 26 GLY A 30 5 ? 5 HELX_P HELX_P2 2 SER A 13 ? TYR A 24 ? SER A 35 TYR A 46 1 ? 12 HELX_P HELX_P3 3 SER A 69 ? LEU A 73 ? SER A 91 LEU A 95 5 ? 5 HELX_P HELX_P4 4 PRO A 74 ? SER A 84 ? PRO A 96 SER A 106 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 20 C ? ? ? 1_555 A MLY 21 N ? ? A LEU 42 A MLY 43 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale both ? A MLY 21 C ? ? ? 1_555 A MLY 22 N ? ? A MLY 43 A MLY 44 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale3 covale both ? A MLY 22 C ? ? ? 1_555 A LEU 23 N ? ? A MLY 44 A LEU 45 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? A ILE 30 C ? ? ? 1_555 A MLY 31 N ? ? A ILE 52 A MLY 53 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale5 covale both ? A MLY 31 C ? ? ? 1_555 A TRP 32 N ? ? A MLY 53 A TRP 54 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale6 covale both ? A GLN 34 C ? ? ? 1_555 A MLY 35 N ? ? A GLN 56 A MLY 57 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale7 covale both ? A MLY 35 C ? ? ? 1_555 A GLY 36 N ? ? A MLY 57 A GLY 58 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale8 covale both ? A GLU 49 C ? ? ? 1_555 A MLY 50 N ? ? A GLU 71 A MLY 72 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale9 covale both ? A MLY 50 C ? ? ? 1_555 A GLU 51 N ? ? A MLY 72 A GLU 73 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale10 covale both ? A LEU 61 C ? ? ? 1_555 A MSE 62 N ? ? A LEU 83 A MSE 84 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale11 covale both ? A MSE 62 C ? ? ? 1_555 A THR 63 N ? ? A MSE 84 A THR 85 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale12 covale both ? A PHE 81 C ? ? ? 1_555 A MSE 82 N ? ? A PHE 103 A MSE 104 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale13 covale both ? A MSE 82 C ? ? ? 1_555 A GLU 83 N ? ? A MSE 104 A GLU 105 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale14 covale both ? A GLY 114 C ? ? ? 1_555 A MLY 115 N ? ? A GLY 136 A MLY 137 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale15 covale both ? A MLY 115 C ? ? ? 1_555 A MLY 116 N ? ? A MLY 137 A MLY 138 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale16 covale both ? A MLY 116 C ? ? ? 1_555 A VAL 117 N ? ? A MLY 138 A VAL 139 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale17 covale both ? A GLU 130 C ? ? ? 1_555 A MLY 131 N ? ? A GLU 152 A MLY 153 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale18 covale both ? A MLY 131 C ? ? ? 1_555 A ASP 132 N ? ? A MLY 153 A ASP 154 1_555 ? ? ? ? ? ? ? 1.333 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 102 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 124 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 103 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 125 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -6.69 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 28 ? MLY A 35 ? THR A 50 MLY A 57 A 2 TYR A 38 ? ALA A 45 ? TYR A 60 ALA A 67 A 3 ARG A 48 ? PHE A 54 ? ARG A 70 PHE A 76 A 4 TRP A 60 ? LEU A 67 ? TRP A 82 LEU A 89 A 5 VAL A 90 ? GLU A 98 ? VAL A 112 GLU A 120 A 6 THR A 105 ? GLU A 112 ? THR A 127 GLU A 134 A 7 MLY A 116 ? PHE A 121 ? MLY A 138 PHE A 143 A 8 LEU A 127 ? ASP A 132 ? LEU A 149 ASP A 154 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N MLY A 31 ? N MLY A 53 O ASP A 42 ? O ASP A 64 A 2 3 N CYS A 43 ? N CYS A 65 O MLY A 50 ? O MLY A 72 A 3 4 N TRP A 53 ? N TRP A 75 O MSE A 62 ? O MSE A 84 A 4 5 N THR A 65 ? N THR A 87 O ILE A 96 ? O ILE A 118 A 5 6 N LEU A 97 ? N LEU A 119 O GLU A 106 ? O GLU A 128 A 6 7 N PHE A 107 ? N PHE A 129 O PHE A 121 ? O PHE A 143 A 7 8 N TYR A 120 ? N TYR A 142 O LEU A 128 ? O LEU A 150 # _atom_sites.entry_id 4FR9 _atom_sites.fract_transf_matrix[1][1] 0.027872 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027044 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008691 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLY 2 24 ? ? ? A . n A 1 3 ASP 3 25 ? ? ? A . n A 1 4 ASP 4 26 26 ASP ASP A . n A 1 5 ASP 5 27 27 ASP ASP A . n A 1 6 ASP 6 28 28 ASP ASP A . n A 1 7 THR 7 29 29 THR THR A . n A 1 8 GLY 8 30 30 GLY GLY A . n A 1 9 TYR 9 31 31 TYR TYR A . n A 1 10 LEU 10 32 32 LEU LEU A . n A 1 11 PRO 11 33 33 PRO PRO A . n A 1 12 PRO 12 34 34 PRO PRO A . n A 1 13 SER 13 35 35 SER SER A . n A 1 14 GLN 14 36 36 GLN GLN A . n A 1 15 ALA 15 37 37 ALA ALA A . n A 1 16 ILE 16 38 38 ILE ILE A . n A 1 17 GLN 17 39 39 GLN GLN A . n A 1 18 ASP 18 40 40 ASP ASP A . n A 1 19 ALA 19 41 41 ALA ALA A . n A 1 20 LEU 20 42 42 LEU LEU A . n A 1 21 MLY 21 43 43 MLY MLY A . n A 1 22 MLY 22 44 44 MLY MLY A . n A 1 23 LEU 23 45 45 LEU LEU A . n A 1 24 TYR 24 46 46 TYR TYR A . n A 1 25 PRO 25 47 47 PRO PRO A . n A 1 26 ASN 26 48 48 ASN ASN A . n A 1 27 ALA 27 49 49 ALA ALA A . n A 1 28 THR 28 50 50 THR THR A . n A 1 29 ALA 29 51 51 ALA ALA A . n A 1 30 ILE 30 52 52 ILE ILE A . n A 1 31 MLY 31 53 53 MLY MLY A . n A 1 32 TRP 32 54 54 TRP TRP A . n A 1 33 GLU 33 55 55 GLU GLU A . n A 1 34 GLN 34 56 56 GLN GLN A . n A 1 35 MLY 35 57 57 MLY MLY A . n A 1 36 GLY 36 58 58 GLY GLY A . n A 1 37 VAL 37 59 59 VAL VAL A . n A 1 38 TYR 38 60 60 TYR TYR A . n A 1 39 TYR 39 61 61 TYR TYR A . n A 1 40 VAL 40 62 62 VAL VAL A . n A 1 41 ALA 41 63 63 ALA ALA A . n A 1 42 ASP 42 64 64 ASP ASP A . n A 1 43 CYS 43 65 65 CYS CYS A . n A 1 44 GLN 44 66 66 GLN GLN A . n A 1 45 ALA 45 67 67 ALA ALA A . n A 1 46 ASP 46 68 68 ASP ASP A . n A 1 47 GLY 47 69 69 GLY GLY A . n A 1 48 ARG 48 70 70 ARG ARG A . n A 1 49 GLU 49 71 71 GLU GLU A . n A 1 50 MLY 50 72 72 MLY MLY A . n A 1 51 GLU 51 73 73 GLU GLU A . n A 1 52 VAL 52 74 74 VAL VAL A . n A 1 53 TRP 53 75 75 TRP TRP A . n A 1 54 PHE 54 76 76 PHE PHE A . n A 1 55 ASP 55 77 77 ASP ASP A . n A 1 56 ALA 56 78 78 ALA ALA A . n A 1 57 ASN 57 79 79 ASN ASN A . n A 1 58 ALA 58 80 80 ALA ALA A . n A 1 59 ASN 59 81 81 ASN ASN A . n A 1 60 TRP 60 82 82 TRP TRP A . n A 1 61 LEU 61 83 83 LEU LEU A . n A 1 62 MSE 62 84 84 MSE MSE A . n A 1 63 THR 63 85 85 THR THR A . n A 1 64 GLU 64 86 86 GLU GLU A . n A 1 65 THR 65 87 87 THR THR A . n A 1 66 GLU 66 88 88 GLU GLU A . n A 1 67 LEU 67 89 89 LEU LEU A . n A 1 68 ASN 68 90 90 ASN ASN A . n A 1 69 SER 69 91 91 SER SER A . n A 1 70 ILE 70 92 92 ILE ILE A . n A 1 71 ASN 71 93 93 ASN ASN A . n A 1 72 ASN 72 94 94 ASN ASN A . n A 1 73 LEU 73 95 95 LEU LEU A . n A 1 74 PRO 74 96 96 PRO PRO A . n A 1 75 PRO 75 97 97 PRO PRO A . n A 1 76 ALA 76 98 98 ALA ALA A . n A 1 77 VAL 77 99 99 VAL VAL A . n A 1 78 LEU 78 100 100 LEU LEU A . n A 1 79 THR 79 101 101 THR THR A . n A 1 80 ALA 80 102 102 ALA ALA A . n A 1 81 PHE 81 103 103 PHE PHE A . n A 1 82 MSE 82 104 104 MSE MSE A . n A 1 83 GLU 83 105 105 GLU GLU A . n A 1 84 SER 84 106 106 SER SER A . n A 1 85 SER 85 107 107 SER SER A . n A 1 86 TYR 86 108 108 TYR TYR A . n A 1 87 ASN 87 109 109 ASN ASN A . n A 1 88 ASN 88 110 110 ASN ASN A . n A 1 89 TRP 89 111 111 TRP TRP A . n A 1 90 VAL 90 112 112 VAL VAL A . n A 1 91 VAL 91 113 113 VAL VAL A . n A 1 92 ASP 92 114 114 ASP ASP A . n A 1 93 ASP 93 115 115 ASP ASP A . n A 1 94 VAL 94 116 116 VAL VAL A . n A 1 95 VAL 95 117 117 VAL VAL A . n A 1 96 ILE 96 118 118 ILE ILE A . n A 1 97 LEU 97 119 119 LEU LEU A . n A 1 98 GLU 98 120 120 GLU GLU A . n A 1 99 TYR 99 121 121 TYR TYR A . n A 1 100 PRO 100 122 122 PRO PRO A . n A 1 101 ASN 101 123 123 ASN ASN A . n A 1 102 GLU 102 124 124 GLU GLU A . n A 1 103 PRO 103 125 125 PRO PRO A . n A 1 104 SER 104 126 126 SER SER A . n A 1 105 THR 105 127 127 THR THR A . n A 1 106 GLU 106 128 128 GLU GLU A . n A 1 107 PHE 107 129 129 PHE PHE A . n A 1 108 VAL 108 130 130 VAL VAL A . n A 1 109 VAL 109 131 131 VAL VAL A . n A 1 110 THR 110 132 132 THR THR A . n A 1 111 VAL 111 133 133 VAL VAL A . n A 1 112 GLU 112 134 134 GLU GLU A . n A 1 113 GLN 113 135 135 GLN GLN A . n A 1 114 GLY 114 136 136 GLY GLY A . n A 1 115 MLY 115 137 137 MLY MLY A . n A 1 116 MLY 116 138 138 MLY MLY A . n A 1 117 VAL 117 139 139 VAL VAL A . n A 1 118 ASP 118 140 140 ASP ASP A . n A 1 119 LEU 119 141 141 LEU LEU A . n A 1 120 TYR 120 142 142 TYR TYR A . n A 1 121 PHE 121 143 143 PHE PHE A . n A 1 122 SER 122 144 144 SER SER A . n A 1 123 GLU 123 145 145 GLU GLU A . n A 1 124 GLY 124 146 146 GLY GLY A . n A 1 125 GLY 125 147 147 GLY GLY A . n A 1 126 GLY 126 148 148 GLY GLY A . n A 1 127 LEU 127 149 149 LEU LEU A . n A 1 128 LEU 128 150 150 LEU LEU A . n A 1 129 HIS 129 151 151 HIS HIS A . n A 1 130 GLU 130 152 152 GLU GLU A . n A 1 131 MLY 131 153 153 MLY MLY A . n A 1 132 ASP 132 154 154 ASP ASP A . n A 1 133 VAL 133 155 155 VAL VAL A . n A 1 134 THR 134 156 156 THR THR A . n A 1 135 ASN 135 157 157 ASN ASN A . n A 1 136 GLY 136 158 158 GLY GLY A . n A 1 137 ASP 137 159 159 ASP ASP A . n A 1 138 ASP 138 160 160 ASP ASP A . n A 1 139 THR 139 161 161 THR THR A . n A 1 140 HIS 140 162 162 HIS HIS A . n A 1 141 TRP 141 163 163 TRP TRP A . n A 1 142 PRO 142 164 164 PRO PRO A . n A 1 143 ARG 143 165 165 ARG ARG A . n A 1 144 VAL 144 166 166 VAL VAL A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 167 HOH HOH A . B 2 HOH 2 202 168 HOH HOH A . B 2 HOH 3 203 169 HOH HOH A . B 2 HOH 4 204 170 HOH HOH A . B 2 HOH 5 205 171 HOH HOH A . B 2 HOH 6 206 172 HOH HOH A . B 2 HOH 7 207 173 HOH HOH A . B 2 HOH 8 208 174 HOH HOH A . B 2 HOH 9 209 175 HOH HOH A . B 2 HOH 10 210 176 HOH HOH A . B 2 HOH 11 211 177 HOH HOH A . B 2 HOH 12 212 178 HOH HOH A . B 2 HOH 13 213 179 HOH HOH A . B 2 HOH 14 214 180 HOH HOH A . B 2 HOH 15 215 181 HOH HOH A . B 2 HOH 16 216 182 HOH HOH A . B 2 HOH 17 217 183 HOH HOH A . B 2 HOH 18 218 184 HOH HOH A . B 2 HOH 19 219 185 HOH HOH A . B 2 HOH 20 220 186 HOH HOH A . B 2 HOH 21 221 187 HOH HOH A . B 2 HOH 22 222 188 HOH HOH A . B 2 HOH 23 223 189 HOH HOH A . B 2 HOH 24 224 190 HOH HOH A . B 2 HOH 25 225 191 HOH HOH A . B 2 HOH 26 226 192 HOH HOH A . B 2 HOH 27 227 193 HOH HOH A . B 2 HOH 28 228 194 HOH HOH A . B 2 HOH 29 229 195 HOH HOH A . B 2 HOH 30 230 196 HOH HOH A . B 2 HOH 31 231 197 HOH HOH A . B 2 HOH 32 232 198 HOH HOH A . B 2 HOH 33 233 199 HOH HOH A . B 2 HOH 34 234 200 HOH HOH A . B 2 HOH 35 235 201 HOH HOH A . B 2 HOH 36 236 202 HOH HOH A . B 2 HOH 37 237 203 HOH HOH A . B 2 HOH 38 238 204 HOH HOH A . B 2 HOH 39 239 205 HOH HOH A . B 2 HOH 40 240 206 HOH HOH A . B 2 HOH 41 241 207 HOH HOH A . B 2 HOH 42 242 208 HOH HOH A . B 2 HOH 43 243 209 HOH HOH A . B 2 HOH 44 244 210 HOH HOH A . B 2 HOH 45 245 211 HOH HOH A . B 2 HOH 46 246 212 HOH HOH A . B 2 HOH 47 247 213 HOH HOH A . B 2 HOH 48 248 214 HOH HOH A . B 2 HOH 49 249 215 HOH HOH A . B 2 HOH 50 250 216 HOH HOH A . B 2 HOH 51 251 217 HOH HOH A . B 2 HOH 52 252 218 HOH HOH A . B 2 HOH 53 253 219 HOH HOH A . B 2 HOH 54 254 220 HOH HOH A . B 2 HOH 55 255 221 HOH HOH A . B 2 HOH 56 256 222 HOH HOH A . B 2 HOH 57 257 223 HOH HOH A . B 2 HOH 58 258 224 HOH HOH A . B 2 HOH 59 259 225 HOH HOH A . B 2 HOH 60 260 226 HOH HOH A . B 2 HOH 61 261 227 HOH HOH A . B 2 HOH 62 262 228 HOH HOH A . B 2 HOH 63 263 229 HOH HOH A . B 2 HOH 64 264 230 HOH HOH A . B 2 HOH 65 265 231 HOH HOH A . B 2 HOH 66 266 232 HOH HOH A . B 2 HOH 67 267 233 HOH HOH A . B 2 HOH 68 268 234 HOH HOH A . B 2 HOH 69 269 235 HOH HOH A . B 2 HOH 70 270 236 HOH HOH A . B 2 HOH 71 271 237 HOH HOH A . B 2 HOH 72 272 238 HOH HOH A . B 2 HOH 73 273 239 HOH HOH A . B 2 HOH 74 274 240 HOH HOH A . B 2 HOH 75 275 241 HOH HOH A . B 2 HOH 76 276 242 HOH HOH A . B 2 HOH 77 277 243 HOH HOH A . B 2 HOH 78 278 244 HOH HOH A . B 2 HOH 79 279 245 HOH HOH A . B 2 HOH 80 280 246 HOH HOH A . B 2 HOH 81 281 247 HOH HOH A . B 2 HOH 82 282 248 HOH HOH A . B 2 HOH 83 283 249 HOH HOH A . B 2 HOH 84 284 250 HOH HOH A . B 2 HOH 85 285 251 HOH HOH A . B 2 HOH 86 286 252 HOH HOH A . B 2 HOH 87 287 253 HOH HOH A . B 2 HOH 88 288 254 HOH HOH A . B 2 HOH 89 289 255 HOH HOH A . B 2 HOH 90 290 256 HOH HOH A . B 2 HOH 91 291 257 HOH HOH A . B 2 HOH 92 292 258 HOH HOH A . B 2 HOH 93 293 259 HOH HOH A . B 2 HOH 94 294 260 HOH HOH A . B 2 HOH 95 295 261 HOH HOH A . B 2 HOH 96 296 262 HOH HOH A . B 2 HOH 97 297 263 HOH HOH A . B 2 HOH 98 298 264 HOH HOH A . B 2 HOH 99 299 265 HOH HOH A . B 2 HOH 100 300 266 HOH HOH A . B 2 HOH 101 301 267 HOH HOH A . B 2 HOH 102 302 268 HOH HOH A . B 2 HOH 103 303 269 HOH HOH A . B 2 HOH 104 304 270 HOH HOH A . B 2 HOH 105 305 271 HOH HOH A . B 2 HOH 106 306 272 HOH HOH A . B 2 HOH 107 307 273 HOH HOH A . B 2 HOH 108 308 274 HOH HOH A . B 2 HOH 109 309 275 HOH HOH A . B 2 HOH 110 310 276 HOH HOH A . B 2 HOH 111 311 277 HOH HOH A . B 2 HOH 112 312 278 HOH HOH A . B 2 HOH 113 313 279 HOH HOH A . B 2 HOH 114 314 280 HOH HOH A . B 2 HOH 115 315 281 HOH HOH A . B 2 HOH 116 316 282 HOH HOH A . B 2 HOH 117 317 283 HOH HOH A . B 2 HOH 118 318 284 HOH HOH A . B 2 HOH 119 319 285 HOH HOH A . B 2 HOH 120 320 286 HOH HOH A . B 2 HOH 121 321 287 HOH HOH A . B 2 HOH 122 322 288 HOH HOH A . B 2 HOH 123 323 289 HOH HOH A . B 2 HOH 124 324 290 HOH HOH A . B 2 HOH 125 325 291 HOH HOH A . B 2 HOH 126 326 292 HOH HOH A . B 2 HOH 127 327 293 HOH HOH A . B 2 HOH 128 328 294 HOH HOH A . B 2 HOH 129 329 295 HOH HOH A . B 2 HOH 130 330 296 HOH HOH A . B 2 HOH 131 331 297 HOH HOH A . B 2 HOH 132 332 298 HOH HOH A . B 2 HOH 133 333 299 HOH HOH A . B 2 HOH 134 334 300 HOH HOH A . B 2 HOH 135 335 301 HOH HOH A . B 2 HOH 136 336 302 HOH HOH A . B 2 HOH 137 337 303 HOH HOH A . B 2 HOH 138 338 304 HOH HOH A . B 2 HOH 139 339 305 HOH HOH A . B 2 HOH 140 340 306 HOH HOH A . B 2 HOH 141 341 307 HOH HOH A . B 2 HOH 142 342 308 HOH HOH A . B 2 HOH 143 343 309 HOH HOH A . B 2 HOH 144 344 310 HOH HOH A . B 2 HOH 145 345 311 HOH HOH A . B 2 HOH 146 346 312 HOH HOH A . B 2 HOH 147 347 313 HOH HOH A . B 2 HOH 148 348 314 HOH HOH A . B 2 HOH 149 349 315 HOH HOH A . B 2 HOH 150 350 316 HOH HOH A . B 2 HOH 151 351 317 HOH HOH A . B 2 HOH 152 352 318 HOH HOH A . B 2 HOH 153 353 319 HOH HOH A . B 2 HOH 154 354 320 HOH HOH A . B 2 HOH 155 355 321 HOH HOH A . B 2 HOH 156 356 322 HOH HOH A . B 2 HOH 157 357 323 HOH HOH A . B 2 HOH 158 358 324 HOH HOH A . B 2 HOH 159 359 325 HOH HOH A . B 2 HOH 160 360 326 HOH HOH A . B 2 HOH 161 361 327 HOH HOH A . B 2 HOH 162 362 328 HOH HOH A . B 2 HOH 163 363 329 HOH HOH A . B 2 HOH 164 364 330 HOH HOH A . B 2 HOH 165 365 331 HOH HOH A . B 2 HOH 166 366 332 HOH HOH A . B 2 HOH 167 367 333 HOH HOH A . B 2 HOH 168 368 334 HOH HOH A . B 2 HOH 169 369 335 HOH HOH A . B 2 HOH 170 370 336 HOH HOH A . B 2 HOH 171 371 337 HOH HOH A . B 2 HOH 172 372 338 HOH HOH A . B 2 HOH 173 373 339 HOH HOH A . B 2 HOH 174 374 340 HOH HOH A . B 2 HOH 175 375 341 HOH HOH A . B 2 HOH 176 376 342 HOH HOH A . B 2 HOH 177 377 343 HOH HOH A . B 2 HOH 178 378 344 HOH HOH A . B 2 HOH 179 379 345 HOH HOH A . B 2 HOH 180 380 346 HOH HOH A . B 2 HOH 181 381 347 HOH HOH A . B 2 HOH 182 382 348 HOH HOH A . B 2 HOH 183 383 349 HOH HOH A . B 2 HOH 184 384 350 HOH HOH A . B 2 HOH 185 385 351 HOH HOH A . B 2 HOH 186 386 352 HOH HOH A . B 2 HOH 187 387 353 HOH HOH A . B 2 HOH 188 388 354 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MLY 21 A MLY 43 ? LYS N-DIMETHYL-LYSINE 2 A MLY 22 A MLY 44 ? LYS N-DIMETHYL-LYSINE 3 A MLY 31 A MLY 53 ? LYS N-DIMETHYL-LYSINE 4 A MLY 35 A MLY 57 ? LYS N-DIMETHYL-LYSINE 5 A MLY 50 A MLY 72 ? LYS N-DIMETHYL-LYSINE 6 A MSE 62 A MSE 84 ? MET SELENOMETHIONINE 7 A MSE 82 A MSE 104 ? MET SELENOMETHIONINE 8 A MLY 115 A MLY 137 ? LYS N-DIMETHYL-LYSINE 9 A MLY 116 A MLY 138 ? LYS N-DIMETHYL-LYSINE 10 A MLY 131 A MLY 153 ? LYS N-DIMETHYL-LYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-24 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_ref_seq_dif.details' # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 4 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 5 SCALA 3.3.20 ? package 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' ? ? ? 6 REFMAC 5.5.0110 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 4FR9 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;1. THE CONSTRUCT (RESIDUES 24-166) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. 2. THE PROTEIN WAS REDUCTIVELY METHYLATED PRIOR TO CRYSTALLIZATION. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MSE A 84 ? ? -170.34 147.99 2 1 GLN A 135 ? ? -158.62 73.22 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 26 ? CG ? A ASP 4 CG 2 1 Y 1 A ASP 26 ? OD1 ? A ASP 4 OD1 3 1 Y 1 A ASP 26 ? OD2 ? A ASP 4 OD2 4 1 Y 1 A ASP 27 ? CG ? A ASP 5 CG 5 1 Y 1 A ASP 27 ? OD1 ? A ASP 5 OD1 6 1 Y 1 A ASP 27 ? OD2 ? A ASP 5 OD2 7 1 Y 1 A MLY 43 ? CD ? A MLY 21 CD 8 1 Y 1 A MLY 43 ? CE ? A MLY 21 CE 9 1 Y 1 A MLY 43 ? NZ ? A MLY 21 NZ 10 1 Y 1 A MLY 43 ? CH1 ? A MLY 21 CH1 11 1 Y 1 A MLY 43 ? CH2 ? A MLY 21 CH2 12 1 Y 1 A MLY 44 ? CE ? A MLY 22 CE 13 1 Y 1 A MLY 44 ? NZ ? A MLY 22 NZ 14 1 Y 1 A MLY 44 ? CH1 ? A MLY 22 CH1 15 1 Y 1 A MLY 44 ? CH2 ? A MLY 22 CH2 16 1 Y 1 A MLY 53 ? CD ? A MLY 31 CD 17 1 Y 1 A MLY 53 ? CE ? A MLY 31 CE 18 1 Y 1 A MLY 53 ? NZ ? A MLY 31 NZ 19 1 Y 1 A MLY 53 ? CH1 ? A MLY 31 CH1 20 1 Y 1 A MLY 53 ? CH2 ? A MLY 31 CH2 21 1 Y 1 A GLN 66 ? CD ? A GLN 44 CD 22 1 Y 1 A GLN 66 ? OE1 ? A GLN 44 OE1 23 1 Y 1 A GLN 66 ? NE2 ? A GLN 44 NE2 24 1 Y 1 A MLY 137 ? CG ? A MLY 115 CG 25 1 Y 1 A MLY 137 ? CD ? A MLY 115 CD 26 1 Y 1 A MLY 137 ? CE ? A MLY 115 CE 27 1 Y 1 A MLY 137 ? NZ ? A MLY 115 NZ 28 1 Y 1 A MLY 137 ? CH1 ? A MLY 115 CH1 29 1 Y 1 A MLY 137 ? CH2 ? A MLY 115 CH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLY 24 ? A GLY 2 3 1 Y 1 A ASP 25 ? A ASP 3 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #