HEADER SIGNALING PROTEIN 26-JUN-12 4FRY TITLE THE STRUCTURE OF A PUTATIVE SIGNAL-TRANSDUCTION PROTEIN WITH CBS TITLE 2 DOMAINS FROM BURKHOLDERIA AMBIFARIA MC40-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SIGNAL-TRANSDUCTION PROTEIN WITH CBS DOMAINS; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA AMBIFARIA; SOURCE 3 ORGANISM_TAXID: 398577; SOURCE 4 STRAIN: MC40-6; SOURCE 5 GENE: BAMMC406_4587; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CBS DOMAIN, SSGCID, STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF KEYWDS 2 ALLERGY AND INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER KEYWDS 3 FOR INFECTIOUS DISEASE, PUTATIVE SIGNAL-TRANSDUCTION PROTEIN, KEYWDS 4 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 4FRY 1 REMARK SEQADV REVDAT 2 30-OCT-13 4FRY 1 JRNL REVDAT 1 11-JUL-12 4FRY 0 JRNL AUTH L.BAUGH,L.A.GALLAGHER,R.PATRAPUVICH,M.C.CLIFTON, JRNL AUTH 2 A.S.GARDBERG,T.E.EDWARDS,B.ARMOUR,D.W.BEGLEY,S.H.DIETERICH, JRNL AUTH 3 D.M.DRANOW,J.ABENDROTH,J.W.FAIRMAN,D.FOX,B.L.STAKER,I.PHAN, JRNL AUTH 4 A.GILLESPIE,R.CHOI,S.NAKAZAWA-HEWITT,M.T.NGUYEN,A.NAPULI, JRNL AUTH 5 L.BARRETT,G.W.BUCHKO,R.STACY,P.J.MYLER,L.J.STEWART,C.MANOIL, JRNL AUTH 6 W.C.VAN VOORHIS JRNL TITL COMBINING FUNCTIONAL AND STRUCTURAL GENOMICS TO SAMPLE THE JRNL TITL 2 ESSENTIAL BURKHOLDERIA STRUCTOME. JRNL REF PLOS ONE V. 8 53851 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23382856 JRNL DOI 10.1371/JOURNAL.PONE.0053851 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 16262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 819 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 993 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1953 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 134 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.79000 REMARK 3 B22 (A**2) : 2.15000 REMARK 3 B33 (A**2) : -0.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.53000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.267 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.754 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2118 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1302 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2904 ; 1.563 ; 2.055 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3211 ; 0.887 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 5.589 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 57 ;30.809 ;23.509 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 323 ;14.577 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;10.256 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 373 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2277 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 406 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1954 33.1601 72.6106 REMARK 3 T TENSOR REMARK 3 T11: 0.4079 T22: 0.4290 REMARK 3 T33: 0.1924 T12: 0.0610 REMARK 3 T13: 0.0541 T23: -0.0499 REMARK 3 L TENSOR REMARK 3 L11: 3.3677 L22: 8.3410 REMARK 3 L33: 1.1408 L12: -1.6557 REMARK 3 L13: -0.7296 L23: 1.2987 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: -0.8847 S13: 0.3376 REMARK 3 S21: 0.8614 S22: 0.1997 S23: 0.5626 REMARK 3 S31: 0.0559 S32: -0.1518 S33: -0.2410 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7024 16.5739 66.0523 REMARK 3 T TENSOR REMARK 3 T11: 0.2187 T22: 0.2015 REMARK 3 T33: 0.1164 T12: 0.0535 REMARK 3 T13: -0.0177 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 2.2351 L22: 5.5687 REMARK 3 L33: 2.7438 L12: 0.2927 REMARK 3 L13: -0.0770 L23: -0.4151 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: -0.3030 S13: -0.2649 REMARK 3 S21: 0.7597 S22: 0.2269 S23: -0.2102 REMARK 3 S31: 0.3767 S32: 0.1544 S33: -0.2211 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1786 21.3849 66.0584 REMARK 3 T TENSOR REMARK 3 T11: 0.0825 T22: 0.2352 REMARK 3 T33: 0.1427 T12: 0.0700 REMARK 3 T13: -0.0833 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.7405 L22: 7.5515 REMARK 3 L33: 2.5744 L12: 0.7610 REMARK 3 L13: -0.1730 L23: 0.2035 REMARK 3 S TENSOR REMARK 3 S11: -0.0360 S12: -0.3997 S13: -0.2692 REMARK 3 S21: 0.4130 S22: 0.2131 S23: -0.8408 REMARK 3 S31: 0.2484 S32: 0.3996 S33: -0.1772 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 138 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2953 36.2419 62.4382 REMARK 3 T TENSOR REMARK 3 T11: 0.1105 T22: 0.1789 REMARK 3 T33: 0.1221 T12: 0.0115 REMARK 3 T13: 0.0215 T23: -0.0554 REMARK 3 L TENSOR REMARK 3 L11: 4.0789 L22: 4.3320 REMARK 3 L33: 2.1348 L12: -0.4656 REMARK 3 L13: 1.1694 L23: -0.5470 REMARK 3 S TENSOR REMARK 3 S11: -0.1944 S12: -0.2990 S13: 0.4300 REMARK 3 S21: 0.4976 S22: 0.1648 S23: -0.2005 REMARK 3 S31: -0.2075 S32: -0.0734 S33: 0.0296 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 29 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1737 26.4691 42.2164 REMARK 3 T TENSOR REMARK 3 T11: 0.3541 T22: 0.2354 REMARK 3 T33: 0.0652 T12: -0.0953 REMARK 3 T13: -0.0603 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.7981 L22: 13.7458 REMARK 3 L33: 2.2079 L12: -0.8986 REMARK 3 L13: -1.0555 L23: -3.8906 REMARK 3 S TENSOR REMARK 3 S11: 0.0620 S12: 0.5646 S13: 0.0519 REMARK 3 S21: -0.9391 S22: 0.0574 S23: -0.2122 REMARK 3 S31: 0.3310 S32: -0.2079 S33: -0.1194 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 30 B 66 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6568 17.4723 48.7361 REMARK 3 T TENSOR REMARK 3 T11: 0.1940 T22: 0.2194 REMARK 3 T33: 0.1544 T12: -0.0961 REMARK 3 T13: -0.0555 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.1896 L22: 5.2546 REMARK 3 L33: 3.1325 L12: -0.9398 REMARK 3 L13: -0.8078 L23: -1.0318 REMARK 3 S TENSOR REMARK 3 S11: 0.0136 S12: 0.3161 S13: -0.3057 REMARK 3 S21: -0.7973 S22: 0.2719 S23: 0.4600 REMARK 3 S31: 0.5175 S32: -0.3486 S33: -0.2855 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 67 B 91 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7837 19.9897 48.5561 REMARK 3 T TENSOR REMARK 3 T11: 0.1081 T22: 0.2380 REMARK 3 T33: 0.2229 T12: -0.1160 REMARK 3 T13: -0.0987 T23: 0.0630 REMARK 3 L TENSOR REMARK 3 L11: 2.4244 L22: 8.5494 REMARK 3 L33: 2.7293 L12: -0.6834 REMARK 3 L13: 0.1687 L23: -1.9986 REMARK 3 S TENSOR REMARK 3 S11: -0.0365 S12: 0.0894 S13: -0.3641 REMARK 3 S21: -0.2855 S22: 0.3991 S23: 0.9554 REMARK 3 S31: 0.2623 S32: -0.5765 S33: -0.3626 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 92 B 138 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9459 35.8888 50.2521 REMARK 3 T TENSOR REMARK 3 T11: 0.0941 T22: 0.1831 REMARK 3 T33: 0.1143 T12: -0.0096 REMARK 3 T13: 0.0210 T23: 0.0574 REMARK 3 L TENSOR REMARK 3 L11: 3.9145 L22: 4.4529 REMARK 3 L33: 1.5233 L12: 0.0333 REMARK 3 L13: 1.3502 L23: 0.2819 REMARK 3 S TENSOR REMARK 3 S11: -0.1206 S12: 0.2176 S13: 0.3890 REMARK 3 S21: -0.4526 S22: 0.1049 S23: 0.1954 REMARK 3 S31: -0.1389 S32: 0.0861 S33: 0.0158 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4FRY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000073280. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16262 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 31.485 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.38100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: 2RC3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40.6 MG/ML BUAMA.00062.B.A1.PS01259, REMARK 280 20% PEG 3350, 200MM POTASSIUM NITRATE, CRYO PROTECTION 20% PEG REMARK 280 300, PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.31500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 139 REMARK 465 LEU A 140 REMARK 465 GLU A 141 REMARK 465 HIS A 142 REMARK 465 TYR A 143 REMARK 465 ILE A 144 REMARK 465 HIS A 145 REMARK 465 GLY A 146 REMARK 465 THR A 147 REMARK 465 PRO A 148 REMARK 465 SER A 149 REMARK 465 VAL A 150 REMARK 465 THR A 151 REMARK 465 SER A 152 REMARK 465 VAL A 153 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 LEU B 140 REMARK 465 GLU B 141 REMARK 465 HIS B 142 REMARK 465 TYR B 143 REMARK 465 ILE B 144 REMARK 465 HIS B 145 REMARK 465 GLY B 146 REMARK 465 THR B 147 REMARK 465 PRO B 148 REMARK 465 SER B 149 REMARK 465 VAL B 150 REMARK 465 THR B 151 REMARK 465 SER B 152 REMARK 465 VAL B 153 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 14 CG OD1 OD2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 ASP A 47 CG OD1 OD2 REMARK 470 ASP A 49 CG OD1 OD2 REMARK 470 ASP A 50 CG OD1 OD2 REMARK 470 ILE A 51 CG1 CG2 CD1 REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 TYR A 86 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ASP A 132 CG OD1 OD2 REMARK 470 GLN A 134 CG CD OE1 NE2 REMARK 470 SER A 138 OG REMARK 470 SER B 2 OG REMARK 470 ASP B 14 CG OD1 OD2 REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 24 CG CD CE NZ REMARK 470 ASN B 25 CG OD1 ND2 REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 LEU B 44 CG CD1 CD2 REMARK 470 ASP B 47 CG OD1 OD2 REMARK 470 ASP B 49 CG OD1 OD2 REMARK 470 ASP B 50 CG OD1 OD2 REMARK 470 ILE B 51 CG1 CG2 CD1 REMARK 470 GLU B 68 CG CD OE1 OE2 REMARK 470 ARG B 75 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 77 CG CD OE1 OE2 REMARK 470 GLU B 78 CG CD OE1 OE2 REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 ASP B 132 CG OD1 OD2 REMARK 470 GLN B 134 CG CD OE1 NE2 REMARK 470 SER B 138 OG REMARK 470 GLN B 139 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 47 74.25 -100.76 REMARK 500 ASP A 49 -4.69 103.08 REMARK 500 VAL A 64 -87.74 -110.01 REMARK 500 ASP B 47 75.89 -114.88 REMARK 500 ASP B 49 -21.83 104.50 REMARK 500 VAL B 64 -85.74 -114.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUAMA.00062.B RELATED DB: TARGETTRACK DBREF 4FRY A 1 153 UNP B1YXI0 B1YXI0_BURA4 1 153 DBREF 4FRY B 1 153 UNP B1YXI0 B1YXI0_BURA4 1 153 SEQADV 4FRY GLY A -3 UNP B1YXI0 EXPRESSION TAG SEQADV 4FRY PRO A -2 UNP B1YXI0 EXPRESSION TAG SEQADV 4FRY GLY A -1 UNP B1YXI0 EXPRESSION TAG SEQADV 4FRY SER A 0 UNP B1YXI0 EXPRESSION TAG SEQADV 4FRY GLY B -3 UNP B1YXI0 EXPRESSION TAG SEQADV 4FRY PRO B -2 UNP B1YXI0 EXPRESSION TAG SEQADV 4FRY GLY B -1 UNP B1YXI0 EXPRESSION TAG SEQADV 4FRY SER B 0 UNP B1YXI0 EXPRESSION TAG SEQRES 1 A 157 GLY PRO GLY SER MET SER THR THR VAL ALA GLN ILE LEU SEQRES 2 A 157 LYS ALA LYS PRO ASP SER GLY ARG THR ILE TYR THR VAL SEQRES 3 A 157 THR LYS ASN ASP PHE VAL TYR ASP ALA ILE LYS LEU MET SEQRES 4 A 157 ALA GLU LYS GLY ILE GLY ALA LEU LEU VAL VAL ASP GLY SEQRES 5 A 157 ASP ASP ILE ALA GLY ILE VAL THR GLU ARG ASP TYR ALA SEQRES 6 A 157 ARG LYS VAL VAL LEU GLN GLU ARG SER SER LYS ALA THR SEQRES 7 A 157 ARG VAL GLU GLU ILE MET THR ALA LYS VAL ARG TYR VAL SEQRES 8 A 157 GLU PRO SER GLN SER THR ASP GLU CYS MET ALA LEU MET SEQRES 9 A 157 THR GLU HIS ARG MET ARG HIS LEU PRO VAL LEU ASP GLY SEQRES 10 A 157 GLY LYS LEU ILE GLY LEU ILE SER ILE GLY ASP LEU VAL SEQRES 11 A 157 LYS SER VAL ILE ALA ASP GLN GLN PHE THR ILE SER GLN SEQRES 12 A 157 LEU GLU HIS TYR ILE HIS GLY THR PRO SER VAL THR SER SEQRES 13 A 157 VAL SEQRES 1 B 157 GLY PRO GLY SER MET SER THR THR VAL ALA GLN ILE LEU SEQRES 2 B 157 LYS ALA LYS PRO ASP SER GLY ARG THR ILE TYR THR VAL SEQRES 3 B 157 THR LYS ASN ASP PHE VAL TYR ASP ALA ILE LYS LEU MET SEQRES 4 B 157 ALA GLU LYS GLY ILE GLY ALA LEU LEU VAL VAL ASP GLY SEQRES 5 B 157 ASP ASP ILE ALA GLY ILE VAL THR GLU ARG ASP TYR ALA SEQRES 6 B 157 ARG LYS VAL VAL LEU GLN GLU ARG SER SER LYS ALA THR SEQRES 7 B 157 ARG VAL GLU GLU ILE MET THR ALA LYS VAL ARG TYR VAL SEQRES 8 B 157 GLU PRO SER GLN SER THR ASP GLU CYS MET ALA LEU MET SEQRES 9 B 157 THR GLU HIS ARG MET ARG HIS LEU PRO VAL LEU ASP GLY SEQRES 10 B 157 GLY LYS LEU ILE GLY LEU ILE SER ILE GLY ASP LEU VAL SEQRES 11 B 157 LYS SER VAL ILE ALA ASP GLN GLN PHE THR ILE SER GLN SEQRES 12 B 157 LEU GLU HIS TYR ILE HIS GLY THR PRO SER VAL THR SER SEQRES 13 B 157 VAL HET NAD A 201 44 HET AMP A 202 23 HET NAD B 201 44 HET AMP B 202 23 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 AMP 2(C10 H14 N5 O7 P) FORMUL 7 HOH *49(H2 O) HELIX 1 1 THR A 4 LYS A 12 1 9 HELIX 2 2 PHE A 27 GLY A 39 1 13 HELIX 3 3 GLU A 57 VAL A 64 1 8 HELIX 4 4 VAL A 65 GLU A 68 5 4 HELIX 5 5 ARG A 75 MET A 80 1 6 HELIX 6 6 SER A 92 ARG A 104 1 13 HELIX 7 7 ILE A 122 ALA A 131 1 10 HELIX 8 8 THR B 4 LYS B 12 1 9 HELIX 9 9 PRO B 13 GLY B 16 5 4 HELIX 10 10 PHE B 27 GLY B 39 1 13 HELIX 11 11 GLU B 57 VAL B 64 1 8 HELIX 12 12 VAL B 65 GLU B 68 5 4 HELIX 13 13 ARG B 75 ILE B 79 5 5 HELIX 14 14 SER B 92 ARG B 104 1 13 HELIX 15 15 ILE B 122 ALA B 131 1 10 SHEET 1 A 3 THR A 21 THR A 23 0 SHEET 2 A 3 ALA A 42 VAL A 46 1 O VAL A 46 N VAL A 22 SHEET 3 A 3 ILE A 51 THR A 56 -1 O VAL A 55 N LEU A 43 SHEET 1 B 2 HIS A 107 ASP A 112 0 SHEET 2 B 2 LYS A 115 SER A 121 -1 O LYS A 115 N ASP A 112 SHEET 1 C 3 THR B 21 VAL B 22 0 SHEET 2 C 3 ALA B 42 VAL B 46 1 O VAL B 46 N VAL B 22 SHEET 3 C 3 ILE B 51 THR B 56 -1 O GLY B 53 N VAL B 45 SHEET 1 D 2 HIS B 107 ASP B 112 0 SHEET 2 D 2 LYS B 115 SER B 121 -1 O ILE B 117 N VAL B 110 CISPEP 1 ASP B 14 SER B 15 0 -23.19 SITE 1 AC1 24 LYS A 12 THR A 18 ILE A 19 TYR A 20 SITE 2 AC1 24 ILE A 40 GLY A 41 ALA A 42 HIS A 107 SITE 3 AC1 24 LEU A 119 SER A 121 ILE A 122 GLY A 123 SITE 4 AC1 24 ASP A 124 LYS A 127 HOH A 302 HOH A 310 SITE 5 AC1 24 HOH A 319 ARG B 58 MET B 100 THR B 101 SITE 6 AC1 24 ARG B 104 MET B 105 ARG B 106 ILE B 122 SITE 1 AC2 15 ILE A 54 THR A 56 ARG A 58 ASP A 59 SITE 2 AC2 15 THR A 81 LYS A 83 VAL A 84 ARG A 85 SITE 3 AC2 15 MET A 105 ARG A 106 HIS A 107 PRO A 109 SITE 4 AC2 15 HOH A 308 HOH A 311 HOH A 315 SITE 1 AC3 24 ARG A 58 MET A 100 THR A 101 ARG A 104 SITE 2 AC3 24 MET A 105 ARG A 106 ILE A 122 HOH A 313 SITE 3 AC3 24 LYS B 12 THR B 18 ILE B 19 TYR B 20 SITE 4 AC3 24 GLY B 41 ALA B 42 LEU B 43 HIS B 107 SITE 5 AC3 24 LEU B 119 SER B 121 ILE B 122 GLY B 123 SITE 6 AC3 24 ASP B 124 LYS B 127 HOH B 301 HOH B 313 SITE 1 AC4 15 ILE B 54 THR B 56 ARG B 58 ASP B 59 SITE 2 AC4 15 THR B 81 LYS B 83 VAL B 84 ARG B 85 SITE 3 AC4 15 MET B 105 ARG B 106 HIS B 107 PRO B 109 SITE 4 AC4 15 HOH B 305 HOH B 307 HOH B 324 CRYST1 33.350 56.630 76.580 90.00 98.41 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029985 0.000000 0.004431 0.00000 SCALE2 0.000000 0.017658 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013200 0.00000