HEADER OXIDOREDUCTASE 26-JUN-12 4FS3 TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS ENOYL-ACP REDUCTASE IN TITLE 2 COMPLEX WITH NADP AND AFN-1252 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADPH] FABI; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENR, NADPH-DEPENDENT ENOYL-ACP REDUCTASE; COMPND 5 EC: 1.3.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 282458; SOURCE 4 STRAIN: MRSA252; SOURCE 5 GENE: FABI, SAR0978; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSSMANN FOLD, SHORT CHAIN DEHYDROGENASE, NADPH BINDING, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.KAPLAN,J.YETHON,E.BARDOUNIOTIS,R.THALAKADA,M.ALBERT,D.E.AWREY, AUTHOR 2 V.ROMANOV,M.DORSEY,J.RAMNAUTH,T.E.CLARKE,M.B.SCHMID,J.BERMAN, AUTHOR 3 H.W.PAULS REVDAT 4 13-SEP-23 4FS3 1 REMARK SEQADV REVDAT 3 07-NOV-12 4FS3 1 JRNL REVDAT 2 26-SEP-12 4FS3 1 REMARK REVDAT 1 19-SEP-12 4FS3 0 JRNL AUTH N.KAPLAN,M.ALBERT,D.AWREY,E.BARDOUNIOTIS,J.BERMAN,T.CLARKE, JRNL AUTH 2 M.DORSEY,B.HAFKIN,J.RAMNAUTH,V.ROMANOV,M.B.SCHMID, JRNL AUTH 3 R.THALAKADA,J.YETHON,H.W.PAULS JRNL TITL MODE OF ACTION, IN VITRO ACTIVITY, AND IN VIVO EFFICACY OF JRNL TITL 2 AFN-1252, A SELECTIVE ANTISTAPHYLOCOCCAL FABI INHIBITOR. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 56 5865 2012 JRNL REFN ISSN 0066-4804 JRNL PMID 22948878 JRNL DOI 10.1128/AAC.01411-12 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1537 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2110 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1971 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.30000 REMARK 3 B22 (A**2) : -1.30000 REMARK 3 B33 (A**2) : 2.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.001 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4FS3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073285. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30598 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09600 REMARK 200 FOR THE DATA SET : 38.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.52900 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1MFP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% (W/V) PEG400, 0.1 M NAHEPES, 0.2 M REMARK 280 CALCIUM ACETATE, PH 7.4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 63.13450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 63.13450 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.45650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.13450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.22825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.13450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.68475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.13450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.68475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.13450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.22825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 63.13450 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 63.13450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.45650 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 63.13450 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 63.13450 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 40.45650 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 63.13450 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 60.68475 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 63.13450 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 20.22825 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.13450 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 20.22825 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 63.13450 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 60.68475 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 63.13450 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 63.13450 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 40.45650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 63.13450 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -63.13450 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 40.45650 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 252.53800 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 126.26900 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 189.40350 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 189.40350 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 40.45650 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 436 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 55 O HOH A 607 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 52 CA - CB - CG ANGL. DEV. = 17.7 DEGREES REMARK 500 ASP A 66 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 70 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 101 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 6 40.86 -107.87 REMARK 500 ARG A 103 -15.41 -151.15 REMARK 500 SER A 122 -59.05 -125.01 REMARK 500 ASN A 156 -21.12 72.63 REMARK 500 ASN A 158 -120.39 44.79 REMARK 500 ASP A 249 22.06 -156.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0WD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0WE A 302 DBREF 4FS3 A 1 256 UNP Q6GI75 FABI_STAAR 1 256 SEQADV 4FS3 LYS A 212 UNP Q6GI75 GLU 212 CLONING ARTIFACT SEQRES 1 A 256 MET LEU ASN LEU GLU ASN LYS THR TYR VAL ILE MET GLY SEQRES 2 A 256 ILE ALA ASN LYS ARG SER ILE ALA PHE GLY VAL ALA LYS SEQRES 3 A 256 VAL LEU ASP GLN LEU GLY ALA LYS LEU VAL PHE THR TYR SEQRES 4 A 256 ARG LYS GLU ARG SER ARG LYS GLU LEU GLU LYS LEU LEU SEQRES 5 A 256 GLU GLN LEU ASN GLN PRO GLU ALA HIS LEU TYR GLN ILE SEQRES 6 A 256 ASP VAL GLN SER ASP GLU GLU VAL ILE ASN GLY PHE GLU SEQRES 7 A 256 GLN ILE GLY LYS ASP VAL GLY ASN ILE ASP GLY VAL TYR SEQRES 8 A 256 HIS SER ILE ALA PHE ALA ASN MET GLU ASP LEU ARG GLY SEQRES 9 A 256 ARG PHE SER GLU THR SER ARG GLU GLY PHE LEU LEU ALA SEQRES 10 A 256 GLN ASP ILE SER SER TYR SER LEU THR ILE VAL ALA HIS SEQRES 11 A 256 GLU ALA LYS LYS LEU MET PRO GLU GLY GLY SER ILE VAL SEQRES 12 A 256 ALA THR THR TYR LEU GLY GLY GLU PHE ALA VAL GLN ASN SEQRES 13 A 256 TYR ASN VAL MET GLY VAL ALA LYS ALA SER LEU GLU ALA SEQRES 14 A 256 ASN VAL LYS TYR LEU ALA LEU ASP LEU GLY PRO ASP ASN SEQRES 15 A 256 ILE ARG VAL ASN ALA ILE SER ALA GLY PRO ILE ARG THR SEQRES 16 A 256 LEU SER ALA LYS GLY VAL GLY GLY PHE ASN THR ILE LEU SEQRES 17 A 256 LYS GLU ILE LYS GLU ARG ALA PRO LEU LYS ARG ASN VAL SEQRES 18 A 256 ASP GLN VAL GLU VAL GLY LYS THR ALA ALA TYR LEU LEU SEQRES 19 A 256 SER ASP LEU SER SER GLY VAL THR GLY GLU ASN ILE HIS SEQRES 20 A 256 VAL ASP SER GLY PHE HIS ALA ILE LYS HET 0WD A 301 48 HET 0WE A 302 28 HETNAM 0WD [[(2R,3S,4R,5R)-5-(3-AMINOCARBONYL-4H-PYRIDIN-1-YL)-3, HETNAM 2 0WD 4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL- HETNAM 3 0WD PHOSPHORYL] [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-4- HETNAM 4 0WD OXIDANYL-3-PHOSPHONOOXY-OXOLAN-2-YL]METHYL HYDROGEN HETNAM 5 0WD PHOSPHATE HETNAM 0WE N-METHYL-N-[(3-METHYL-1-BENZOFURAN-2-YL)METHYL]-3-(7- HETNAM 2 0WE OXO-5,6,7,8-TETRAHYDRO-1,8-NAPHTHYRIDIN-3-YL) HETNAM 3 0WE PROPANAMIDE FORMUL 2 0WD C21 H30 N7 O17 P3 FORMUL 3 0WE C22 H23 N3 O3 FORMUL 4 HOH *256(H2 O) HELIX 1 1 SER A 19 LEU A 31 1 13 HELIX 2 2 LYS A 41 ARG A 43 5 3 HELIX 3 3 SER A 44 GLU A 53 1 10 HELIX 4 4 GLN A 54 ASN A 56 5 3 HELIX 5 5 SER A 69 GLY A 85 1 17 HELIX 6 6 ASN A 98 ARG A 103 5 6 HELIX 7 7 ARG A 105 THR A 109 5 5 HELIX 8 8 SER A 110 SER A 122 1 13 HELIX 9 9 SER A 122 LYS A 134 1 13 HELIX 10 10 TYR A 147 GLU A 151 5 5 HELIX 11 11 TYR A 157 GLY A 179 1 23 HELIX 12 12 THR A 195 LYS A 199 5 5 HELIX 13 13 GLY A 203 ALA A 215 1 13 HELIX 14 14 ASP A 222 SER A 235 1 14 HELIX 15 15 ASP A 236 SER A 239 5 4 HELIX 16 16 GLY A 251 ILE A 255 5 5 SHEET 1 A 7 HIS A 61 GLN A 64 0 SHEET 2 A 7 LYS A 34 TYR A 39 1 N PHE A 37 O HIS A 61 SHEET 3 A 7 THR A 8 MET A 12 1 N ILE A 11 O VAL A 36 SHEET 4 A 7 GLY A 89 HIS A 92 1 O TYR A 91 N MET A 12 SHEET 5 A 7 GLY A 140 THR A 146 1 O VAL A 143 N HIS A 92 SHEET 6 A 7 ILE A 183 ALA A 190 1 O ILE A 188 N THR A 146 SHEET 7 A 7 ASN A 245 VAL A 248 1 O ILE A 246 N ALA A 187 SITE 1 AC1 34 GLY A 13 ILE A 14 ALA A 15 SER A 19 SITE 2 AC1 34 ILE A 20 THR A 38 TYR A 39 ARG A 40 SITE 3 AC1 34 ILE A 65 ASP A 66 VAL A 67 SER A 93 SITE 4 AC1 34 ILE A 94 ALA A 95 ILE A 120 THR A 145 SITE 5 AC1 34 THR A 146 TYR A 147 LYS A 164 ALA A 190 SITE 6 AC1 34 GLY A 191 PRO A 192 ILE A 193 THR A 195 SITE 7 AC1 34 LEU A 196 SER A 197 0WE A 302 HOH A 408 SITE 8 AC1 34 HOH A 424 HOH A 472 HOH A 473 HOH A 567 SITE 9 AC1 34 HOH A 598 HOH A 634 SITE 1 AC2 10 PHE A 96 ALA A 97 LEU A 102 TYR A 147 SITE 2 AC2 10 GLN A 155 ASN A 156 TYR A 157 SER A 197 SITE 3 AC2 10 0WD A 301 HOH A 526 CRYST1 126.269 126.269 80.913 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007920 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012359 0.00000